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Felix Hoffstaedter 50b1f0f8ae [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "4b290c00-60a2-439d-9984-a494f9994de1",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-04-01 13:29:07 +02:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-04-01 12:46:27 +02:00
code SLURM submission setup 2026-04-01 12:46:39 +02:00
duct-logs Merge results 2026-04-01 13:20:35 +02:00
sourcedata Register ds004128 BIDS dataset as input 2026-04-01 12:46:34 +02:00
sub-3E6MS move data to dataset root 2026-04-01 13:20:58 +02:00
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.gitattributes keep non-binary files in git 2026-04-01 12:46:16 +02:00
.gitignore SLURM submission setup 2026-04-01 12:46:39 +02:00
.gitmodules Register ds004128 BIDS dataset as input 2026-04-01 12:46:34 +02:00
CHANGELOG.md Apply YODA dataset setup 2026-04-01 12:46:15 +02:00
dataset_description.json move data to dataset root 2026-04-01 13:20:58 +02:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 13:28:49 +02:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 13:28:49 +02:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 13:28:49 +02:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 13:28:49 +02:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-04-01 13:29:07 +02:00
README.md add README with Acknowledgements 2026-04-01 12:46:16 +02:00
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README.md

ds004128 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds004128.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).