openneuro-mriqc24.0.2/ds004102
Watch
2
0
Fork
You've already forked ds004102
 0
Code Activity
No description
78 commits 34 branches 0 tags 1.5 GiB
  • HTML 99.8%
  • Shell 0.2%
Find a file
Exact
Repository files (latest commit first)
Filename Latest commit message Latest commit date
Felix Hoffstaedter 7d355dfaae [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "de3633c0-7fc9-4644-a523-f5164dbb30af",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-04-01 14:25:01 +02:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-04-01 12:49:56 +02:00
code SLURM submission setup 2026-04-01 12:50:09 +02:00
duct-logs Merge results 2026-04-01 14:02:14 +02:00
sourcedata Register ds004102 BIDS dataset as input 2026-04-01 12:50:04 +02:00
sub-1 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-3 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-4 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-6 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-7 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-8 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-9 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-11 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-12 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-13 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-14 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-15 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-17 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-18 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-19 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-20 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-21 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-22 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-23 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-24 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-25 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-26 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-27 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-28 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-29 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-30 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-31 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-32 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-33 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-34 move data to dataset root 2026-04-01 14:02:34 +02:00
sub-35 move data to dataset root 2026-04-01 14:02:34 +02:00
.bidsignore move data to dataset root 2026-04-01 14:02:34 +02:00
.gitattributes keep non-binary files in git 2026-04-01 12:49:44 +02:00
.gitignore SLURM submission setup 2026-04-01 12:50:09 +02:00
.gitmodules Register ds004102 BIDS dataset as input 2026-04-01 12:50:04 +02:00
CHANGELOG.md Apply YODA dataset setup 2026-04-01 12:49:43 +02:00
dataset_description.json move data to dataset root 2026-04-01 14:02:34 +02:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 14:24:38 +02:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 14:24:38 +02:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 14:24:38 +02:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 14:24:38 +02:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-04-01 14:25:01 +02:00
README.md add README with Acknowledgements 2026-04-01 12:49:44 +02:00
sub-1_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-1_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-3_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-3_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-4_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-4_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-4_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-4_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-6_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-6_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-6_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-6_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-7_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-7_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-7_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-7_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-8_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-8_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-8_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-8_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-9_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-9_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-9_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-9_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-11_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-11_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-11_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-11_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-12_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-12_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-12_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-12_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-13_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-13_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-13_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-13_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-14_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-14_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-14_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-14_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-15_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-15_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-15_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-15_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-17_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-17_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-17_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-17_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-18_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-18_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-18_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-18_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-19_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-19_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-19_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-19_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-20_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-20_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-20_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-20_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-21_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-21_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-21_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-21_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-22_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-22_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-22_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-22_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-23_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-23_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-23_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-23_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-24_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-24_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-24_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-24_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-25_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-25_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-25_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-25_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-26_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-26_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-26_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-26_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-27_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-27_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-27_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-27_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-28_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-28_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-28_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-28_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-29_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-29_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-29_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-29_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-30_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-30_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-30_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-30_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-31_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-31_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-31_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-31_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-32_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-32_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-32_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-32_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-33_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-33_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-33_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-33_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-34_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-34_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-34_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-34_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-35_ses-active_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-35_ses-active_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-35_ses-sham_T1w.html move data to dataset root 2026-04-01 14:02:34 +02:00
sub-35_ses-sham_task-cueexposure_bold.html move data to dataset root 2026-04-01 14:02:34 +02:00

README.md

ds004102 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds004102.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).