openneuro-mriqc24.0.2/ds003401
Watch
2
0
Fork
You've already forked ds003401
 0
Code Activity
No description
88 commits 72 branches 0 tags 952 MiB
  • HTML 99.9%
  • Shell 0.1%
Find a file
Exact
Repository files (latest commit first)
Filename Latest commit message Latest commit date
Felix Hoffstaedter 86a86d7021 [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "8456c839-032e-4bfa-a0ba-fe3a94758c42",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-06-03 11:34:32 +02:00
.datalad
code
duct-logs
sourcedata
sub-01 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-02 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-03 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-04 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-05 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-06 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-07 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-08 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-09 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-10 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-11 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-12 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-13 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-14 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-15 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-16 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-17 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-18 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-19 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-20 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-21 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-22 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-23 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-24 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-25 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-26 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-27 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-28 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-29 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-30 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-31 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-32 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-33 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-34 move data to dataset root 2026-06-03 11:24:20 +02:00
sub-35 move data to dataset root 2026-06-03 11:24:20 +02:00
.bidsignore move data to dataset root 2026-06-03 11:24:20 +02:00
.gitattributes
.gitignore
.gitmodules
CHANGELOG.md
dataset_description.json move data to dataset root 2026-06-03 11:24:20 +02:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-03 11:34:13 +02:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-03 11:34:13 +02:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-03 11:34:13 +02:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-03 11:34:13 +02:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-06-03 11:34:32 +02:00
README.md
sub-01_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-01_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-01_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-01_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-02_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-02_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-02_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-02_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-03_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-03_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-03_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-03_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-04_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-04_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-04_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-04_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-05_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-05_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-05_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-05_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-06_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-06_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-06_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-06_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-07_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-07_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-07_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-07_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-08_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-08_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-08_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-08_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-09_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-09_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-09_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-09_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-10_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-10_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-10_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-10_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-11_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-11_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-11_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-11_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-12_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-12_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-12_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-12_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-13_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-13_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-13_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-13_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-14_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-14_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-14_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-14_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-15_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-15_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-15_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-15_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-16_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-16_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-16_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-16_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-17_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-17_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-17_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-17_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-18_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-18_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-18_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-18_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-19_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-19_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-19_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-19_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-20_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-20_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-20_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-20_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-21_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-21_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-21_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-21_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-22_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-22_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-22_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-22_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-23_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-23_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-23_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-23_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-24_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-24_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-24_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-24_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-25_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-25_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-25_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-25_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-26_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-26_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-26_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-26_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-27_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-27_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-27_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-27_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-28_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-28_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-28_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-28_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-29_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-29_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-29_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-29_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-30_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-30_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-30_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-30_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-31_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-31_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-31_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-31_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-32_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-32_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-32_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-32_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-33_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-33_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-33_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-33_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-34_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-34_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-34_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-34_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-35_T1w.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-35_task-asrt_run-1_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-35_task-asrt_run-2_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00
sub-35_task-asrt_run-3_bold.html move data to dataset root 2026-06-03 11:24:20 +02:00

README.md

ds003401 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds003401.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).