openneuro-mriqc24.0.2/ds003338
Watch
2
0
Fork
You've already forked ds003338
 0
Code Activity
No description
58 commits 42 branches 0 tags 1.2 GiB
  • HTML 99.8%
  • Shell 0.2%
Find a file
Exact
Repository files (latest commit first)
Filename Latest commit message Latest commit date
Felix Hoffstaedter c934cee666 [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "e14c48b5-014c-4c6d-94e3-f140ab8c00f0",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-06-03 03:35:37 +02:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-04-01 14:40:54 +02:00
code SLURM submission setup 2026-04-01 14:41:05 +02:00
duct-logs Merge results 2026-06-03 02:58:37 +02:00
sourcedata Register ds003338 BIDS dataset as input 2026-04-01 14:41:00 +02:00
sub-01 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-02 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-03 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-04 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-05 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-06 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-07 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-08 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-09 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-10 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-11 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-12 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-13 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-14 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-15 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-16 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-17 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-18 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-19 move data to dataset root 2026-06-03 02:58:55 +02:00
sub-20 move data to dataset root 2026-06-03 02:58:55 +02:00
.bidsignore move data to dataset root 2026-06-03 02:58:55 +02:00
.gitattributes keep non-binary files in git 2026-04-01 14:40:41 +02:00
.gitignore SLURM submission setup 2026-04-01 14:41:05 +02:00
.gitmodules Register ds003338 BIDS dataset as input 2026-04-01 14:41:00 +02:00
CHANGELOG.md Apply YODA dataset setup 2026-04-01 14:40:40 +02:00
dataset_description.json move data to dataset root 2026-06-03 02:58:55 +02:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-03 03:35:09 +02:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-03 03:35:09 +02:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-03 03:35:09 +02:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-03 03:35:09 +02:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-06-03 03:35:37 +02:00
README.md add README with Acknowledgements 2026-04-01 14:40:42 +02:00
sub-01_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-01_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-01_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-01_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-01_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-01_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-01_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-02_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-02_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-02_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-02_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-02_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-02_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-02_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-03_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-03_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-03_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-03_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-03_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-03_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-03_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-04_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-04_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-04_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-04_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-04_ses-01_task-view_run-00_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-04_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-04_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-04_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-05_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-05_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-05_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-05_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-05_ses-01_task-view_run-00_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-05_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-05_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-05_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-06_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-06_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-06_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-06_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-06_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-06_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-06_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-07_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-07_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-07_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-07_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-07_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-07_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-07_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-08_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-08_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-08_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-08_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-08_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-08_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-08_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-09_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-09_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-09_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-09_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-09_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-09_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-09_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-10_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-10_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-10_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-10_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-10_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-10_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-10_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-11_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-11_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-11_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-11_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-11_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-11_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-11_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-12_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-12_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-12_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-12_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-12_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-12_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-12_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-13_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-13_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-13_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-13_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-13_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-13_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-13_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-14_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-14_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-14_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-14_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-14_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-14_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-14_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-15_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-15_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-15_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-15_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-15_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-15_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-15_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-16_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-16_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-16_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-16_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-16_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-16_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-16_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-17_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-17_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-17_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-17_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-17_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-17_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-17_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-18_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-18_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-18_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-18_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-18_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-18_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-18_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-19_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-19_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-19_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-19_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-19_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-19_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-19_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-20_ses-01_T1w.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-20_ses-01_task-recall_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-20_ses-01_task-recall_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-20_ses-01_task-recall_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-20_ses-01_task-view_run-01_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-20_ses-01_task-view_run-02_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00
sub-20_ses-01_task-view_run-03_bold.html move data to dataset root 2026-06-03 02:58:55 +02:00

README.md

ds003338 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds003338.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).