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Felix Hoffstaedter 6e9dfdc7ce [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "6c0457b3-18ee-4787-8b43-fce13b71c58a",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-04-01 01:55:33 +02:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-03-31 22:40:35 +02:00
code SLURM submission setup 2026-03-31 22:40:48 +02:00
duct-logs Merge results 2026-04-01 01:42:49 +02:00
sourcedata Register ds003138 BIDS dataset as input 2026-03-31 22:40:43 +02:00
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sub-82KK02460 move data to dataset root 2026-04-01 01:43:53 +02:00
.bidsignore move data to dataset root 2026-04-01 01:43:53 +02:00
.gitattributes keep non-binary files in git 2026-03-31 22:40:21 +02:00
.gitignore SLURM submission setup 2026-03-31 22:40:48 +02:00
.gitmodules Register ds003138 BIDS dataset as input 2026-03-31 22:40:43 +02:00
CHANGELOG.md Apply YODA dataset setup 2026-03-31 22:40:20 +02:00
dataset_description.json move data to dataset root 2026-04-01 01:43:53 +02:00
group_dwi.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 01:55:14 +02:00
group_dwi.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 01:55:14 +02:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 01:55:14 +02:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 01:55:14 +02:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-04-01 01:55:33 +02:00
README.md add README with Acknowledgements 2026-03-31 22:40:22 +02:00
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sub-82KK02222_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02222_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02223_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02223_ses-2_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02223_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02224_ses-1_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02224_ses-1_acq-shell3_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02224_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02224_ses-2_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02224_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02325_ses-1_acq-shell3_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02325_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02325_ses-2_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02325_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02326_ses-1_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02326_ses-1_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02326_ses-1_acq-shell3_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02326_ses-1_T1w.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02326_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02326_ses-2_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02326_ses-2_acq-shell3_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02326_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02327_ses-1_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02327_ses-1_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02327_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02327_ses-2_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02327_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02329_ses-1_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02329_ses-1_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02329_ses-1_acq-shell3_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02329_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02329_ses-2_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02329_ses-2_acq-shell3_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02329_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02331_ses-1_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02331_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02331_ses-2_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02331_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02332_ses-1_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02332_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02332_ses-2_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02332_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02333_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02333_ses-2_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02333_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02333_ses-3_acq-shell3_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02334_ses-1_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02334_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
sub-82KK02334_ses-2_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02334_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02335_ses-1_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02341_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02342_ses-1_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02342_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02342_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02343_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02445_ses-2_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02445_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02447_ses-3_acq-shell1_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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sub-82KK02451_ses-2_acq-shell2_dir-AP_run-1_dwi.html move data to dataset root 2026-04-01 01:43:53 +02:00
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README.md

ds003138 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds003138.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).