No description
  • HTML 99.8%
  • Shell 0.2%
Find a file
Repository files (latest commit first)
Filename Latest commit message Latest commit date
Felix Hoffstaedter c37a150ea4 [DATALAD RUNCMD] run MRIQC classifier
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "d7572d1b-e703-44d5-8ee1-e3880d0863de",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-04-01 00:05:43 +02:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-03-31 23:01:29 +02:00
code SLURM submission setup 2026-03-31 23:01:40 +02:00
duct-logs Merge results 2026-03-31 23:50:28 +02:00
sourcedata Register ds003095 BIDS dataset as input 2026-03-31 23:01:35 +02:00
sub-1004 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1005 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1006 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1007 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1008 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1009 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1011 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1012 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1014 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1015 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1016 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1017 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1018 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1019 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1020 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1021 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1022 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1023 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1024 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1026 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1027 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1028 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1029 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1030 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1031 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1032 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1033 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1034 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1035 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1036 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1037 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1038 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1039 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1040 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1041 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1042 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1043 move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1044 move data to dataset root 2026-03-31 23:50:57 +02:00
.bidsignore move data to dataset root 2026-03-31 23:50:57 +02:00
.gitattributes keep non-binary files in git 2026-03-31 23:01:15 +02:00
.gitignore SLURM submission setup 2026-03-31 23:01:40 +02:00
.gitmodules Register ds003095 BIDS dataset as input 2026-03-31 23:01:35 +02:00
CHANGELOG.md Apply YODA dataset setup 2026-03-31 23:01:14 +02:00
dataset_description.json move data to dataset root 2026-03-31 23:50:57 +02:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 00:05:23 +02:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 00:05:23 +02:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 00:05:23 +02:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-04-01 00:05:23 +02:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-04-01 00:05:43 +02:00
README.md add README with Acknowledgements 2026-03-31 23:01:15 +02:00
sub-1004_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1004_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1004_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1004_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1004_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1005_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1005_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1005_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1005_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1005_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1006_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1006_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1006_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1006_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1006_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1007_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1007_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1007_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1007_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1007_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1008_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1008_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1008_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1008_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1008_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1009_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1009_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1009_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1009_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1009_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1011_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1011_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1011_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1011_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1011_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1012_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1012_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1012_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1012_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1012_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1014_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1014_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1014_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1014_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1014_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1015_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1015_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1015_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1015_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1015_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1016_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1016_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1016_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1016_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1016_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1017_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1017_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1017_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1017_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1017_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1018_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1018_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1018_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1018_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1018_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1019_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1019_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1019_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1019_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1019_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1020_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1020_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1020_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1020_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1020_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1021_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1021_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1021_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1021_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1021_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1022_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1022_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1022_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1022_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1022_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1023_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1023_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1023_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1023_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1023_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1024_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1024_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1024_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1024_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1024_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1026_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1026_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1026_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1026_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1026_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1027_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1027_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1027_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1027_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1027_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1028_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1028_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1028_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1028_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1028_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1029_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1029_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1029_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1029_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1029_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1030_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1030_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1030_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1030_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1030_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1031_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1031_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1031_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1031_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1031_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1032_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1032_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1032_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1032_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1032_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1033_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1033_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1033_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1033_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1033_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1034_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1034_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1034_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1034_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1034_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1035_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1035_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1035_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1035_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1035_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1036_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1036_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1036_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1036_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1036_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1037_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1037_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1037_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1037_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1037_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1038_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1038_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1038_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1038_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1038_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1039_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1039_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1039_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1039_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1039_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1040_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1040_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1040_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1040_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1040_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1041_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1041_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1041_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1041_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1041_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1042_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1042_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1042_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1042_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1042_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1043_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1043_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1043_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1043_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1043_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1044_T1w.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1044_task-run1_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1044_task-run2_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1044_task-run3_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00
sub-1044_task-run4_bold.html move data to dataset root 2026-03-31 23:50:57 +02:00

ds003095 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds003095.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).