606 lines
42 KiB
HTML
606 lines
42 KiB
HTML
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<meta name="generator" content="NiReports: https://www.nipreps.org/" />
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<title>sub-CTS207_task-restfixationfixed_bold :: MRIQC's BOLD fMRI report</title>
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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<h1 class="text-danger"> The navigation menu uses Javascript. Without it this report might not work as expected </h1>
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</noscript>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="datatype-figures_desc-stdev_subject-CTS207_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-stdev_bold.svg" target="_blank">sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-stdev_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-background_subject-CTS207_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-background_bold.svg" target="_blank">sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-background_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-zoomed_subject-CTS207_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-zoomed_bold.svg" target="_blank">sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-carpet_subject-CTS207_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-carpet_bold.svg" target="_blank">sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="datatype-figures_desc-mean_subject-CTS207_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-mean_bold.svg" target="_blank">sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="datatype-figures_desc-brainmask_subject-CTS207_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-brainmask_bold.svg" target="_blank">sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="datatype-figures_desc-norm_subject-CTS207_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-norm_bold.svg" style="">
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Problem loading figure sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-norm_bold.svg" target="_blank">sub-CTS207/figures/sub-CTS207_task-restfixationfixed_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-0">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-0-collapse" aria-controls="about-metadata-0-collapse">
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Provenance Information
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</button>
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-CTS207/func/sub-CTS207_task-restfixationfixed_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>974e6c4b871f1c4346332cfff8d5b94b</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>64</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>11:04:4.792500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>26.483</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>64</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>HEAD</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20171017 GCC6.3.0</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000590001</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>35177</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.027</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000590001</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>90</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.999687, 0.0191939, -0.0160729, -0.0173115, 0.993778, 0.110023]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Scott_Ave._4525_St._Louis_MO_US_63110</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>Washington_University</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>TrioTim</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>64</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>1905</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>head_GREENE</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>ep2d_bold_feedback_rest</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilName</td><td>HeadMatrix</td></tr>
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<tr><td colspan=2>ReconMatrixPE</td><td>64</td></tr>
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<tr><td colspan=2>RepetitionTime</td><td>2.5</td></tr>
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<tr><td colspan=2>SAR</td><td>0.148571</td></tr>
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<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
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<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
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<tr><td colspan=2>SequenceName</td><td>_epfid2d1_64</td></tr>
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<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
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<tr><td colspan=2>SeriesDescription</td><td>ep2d_bold_feedback_rest</td></tr>
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<tr><td colspan=2>SeriesNumber</td><td>6</td></tr>
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<tr><td colspan=2>ShimSetting</td><td>[-238, -19598, 7970, 192, 121, -575, 432, 55]</td></tr>
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<tr><td colspan=2>SliceThickness</td><td>4</td></tr>
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<tr><td colspan=2>SliceTiming</td><td>[1.255, 0, 1.335, 0.08, 1.4125, 0.1575, 1.49, 0.235, 1.57, 0.315, 1.6475, 0.3925, 1.725, 0.47, 1.805, 0.55, 1.8825, 0.6275, 1.96, 0.7075, 2.04, 0.785, 2.1175, 0.8625, 2.1975, 0.9425, 2.275, 1.02, 2.3525, 1.0975, 2.4325, 1.1775]</td></tr>
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<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_B17</td></tr>
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<tr><td colspan=2>SpacingBetweenSlices</td><td>4</td></tr>
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<tr><td colspan=2>StationName</td><td>MRC35177</td></tr>
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<tr><td colspan=2>TaskName</td><td>restfixationfixed</td></tr>
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<tr><td colspan=2>TotalReadoutTime</td><td>0.0371701</td></tr>
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<tr><td colspan=2>TxRefAmp</td><td>334.858</td></tr>
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<tr><td>dcmmeta</td><td>affine</td><td>[[-3.9987480640411377, -0.06924600154161453, -0.07233866304159164, 131.82217407226562], [-0.07677560299634933, 3.975111961364746, 0.4388412535190582, -137.26507568359375], [-0.06429159641265869, -0.440091997385025, 3.9751968383789062, -16.057140350341797], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>shape</td><td>[64, 64, 32, 164]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'AcquisitionTime': ['110404.792500', '110407.302500', '110409.812500', '110412.322500', '110414.832500', '110417.342500', '110419.852500', '110422.362500', '110424.872500', '110427.382500', '110429.892500', '110432.402500', '110434.912500', '110437.422500', '110439.932500', '110442.442500', '110444.952500', '110447.462500', '110449.972500', '110452.482500', '110454.992500', '110457.502500', '110500.012500', '110502.525000', '110505.035000', '110507.545000', '110510.055000', '110512.565000', '110515.075000', '110517.585000', '110520.095000', '110522.605000', '110525.115000', '110527.625000', '110530.135000', '110532.645000', '110535.155000', '110537.665000', '110540.175000', '110542.685000', '110545.195000', '110547.705000', '110550.215000', '110552.725000', '110555.235000', '110557.745000', '110600.255000', '110602.765000', '110605.275000', '110607.785000', '110610.295000', '110612.805000', '110615.315000', '110617.825000', '110620.335000', '110622.845000', '110625.355000', '110627.865000', '110630.375000', '110632.885000', '110635.395000', '110637.905000', '110640.415000', '110642.925000', '110645.435000', '110647.945000', '110650.455000', '110652.965000', '110655.475000', '110657.985000', '110700.495000', '110703.005000', '110705.515000', '110708.025000', '110710.535000', '110713.045000', '110715.555000', '110718.065000', '110720.575000', '110723.085000', '110725.595000', '110728.105000', '110730.615000', '110733.125000', '110735.635000', '110738.147500', '110740.657500', '110743.167500', '110745.677500', '110748.187500', '110750.697500', '110753.207500', '110755.717500', '110758.227500', '110800.737500', '110803.247500', '110805.757500', '110808.267500', '110810.777500', '110813.287500', '110815.797500', '110818.307500', '110820.817500', '110823.327500', '110825.837500', '110828.347500', '110830.857500', '110833.367500', '110835.877500', '110838.387500', '110840.897500', '110843.407500', '110845.917500', '110848.427500', '110850.937500', '110853.447500', '110855.957500', '110858.467500', '110900.977500', '110903.487500', '110905.997500', '110908.507500', '110911.017500', '110913.527500', '110916.037500', '110918.547500', '110921.057500', '110923.567500', '110926.077500', '110928.587500', '110931.097500', '110933.607500', '110936.117500', '110938.627500', '110941.137500', '110943.647500', '110946.157500', '110948.667500', '110951.177500', '110953.687500', '110956.197500', '110958.707500', '111001.217500', '111003.727500', '111006.237500', '111008.747500', '111011.257500', '111013.770000', '111016.280000', '111018.790000', '111021.300000', '111023.810000', '111026.320000', '111028.830000', '111031.340000', '111033.850000', '111036.360000', '111038.870000', '111041.380000', '111043.890000', '111046.400000', '111048.910000', '111051.420000', '111053.930000'], 'ContentTime': ['110407.234000', '110409.734000', '110412.234000', '110414.734000', '110417.234000', '110419.734000', '110422.234000', '110424.734000', '110427.234000', '110429.734000', '110432.234000', '110434.734000', '110437.234000', '110439.734000', '110442.234000', '110444.734000', '110447.234000', '110449.734000', '110452.234000', '110454.734000', '110457.234000', '110459.734000', '110502.234000', '110504.734000', '110507.234000', '110509.734000', '110512.234000', '110514.734000', '110517.234000', '110519.734000', '110522.234000', '110524.734000', '110527.234000', '110529.734000', '110532.234000', '110534.734000', '110537.234000', '110539.734000', '110542.234000', '110544.734000', '110547.234000', '110549.734000', '110552.234000', '110554.734000', '110557.234000', '110559.734000', '110602.234000', '110604.734000', '110607.234000', '110609.734000', '110612.234000', '110614.734000', '110617.234000', '110619.734000', '110622.234000', '110624.734000', '110627.234000', '110629.734000', '110632.234000', '110634.734000', '110637.234000', '110639.734000', '110642.234000', '110644.734000', '110647.234000', '110649.734000', '110652.234000', '110654.734000', '110657.234000', '110659.734000', '110702.234000', '110704.734000', '110707.234000', '110709.734000', '110712.234000', '110714.734000', '110717.234000', '110719.734000', '110722.234000', '110724.734000', '110727.234000', '110729.734000', '110732.234000', '110734.734000', '110737.234000', '110739.734000', '110742.234000', '110744.734000', '110747.234000', '110749.734000', '110752.234000', '110754.734000', '110757.234000', '110759.734000', '110802.234000', '110804.734000', '110807.234000', '110809.734000', '110812.234000', '110814.734000', '110817.234000', '110819.734000', '110822.234000', '110824.734000', '110827.234000', '110829.734000', '110832.234000', '110834.734000', '110837.234000', '110839.734000', '110842.234000', '110844.734000', '110847.234000', '110849.734000', '110852.234000', '110854.734000', '110857.234000', '110859.734000', '110902.234000', '110904.734000', '110907.234000', '110909.734000', '110912.234000', '110914.734000', '110917.234000', '110919.734000', '110922.234000', '110924.734000', '110927.234000', '110929.734000', '110932.234000', '110934.734000', '110937.234000', '110939.734000', '110942.234000', '110944.734000', '110947.234000', '110949.734000', '110952.234000', '110954.734000', '110957.234000', '110959.734000', '111002.234000', '111004.734000', '111007.234000', '111009.734000', '111012.234000', '111014.734000', '111017.234000', '111019.734000', '111022.234000', '111024.734000', '111027.234000', '111029.734000', '111032.234000', '111034.734000', '111037.234000', '111039.734000', '111042.234000', '111044.734000', '111047.234000', '111049.734000', '111052.234000', '111054.593000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'WindowCenter': [694.0, 691.0, 692.0, 693.0, 692.0, 691.0, 691.0, 692.0, 693.0, 693.0, 694.0, 694.0, 693.0, 691.0, 690.0, 693.0, 693.0, 691.0, 690.0, 693.0, 690.0, 692.0, 694.0, 695.0, 693.0, 694.0, 691.0, 692.0, 691.0, 694.0, 693.0, 692.0, 694.0, 693.0, 691.0, 693.0, 692.0, 693.0, 694.0, 693.0, 690.0, 692.0, 693.0, 693.0, 693.0, 691.0, 693.0, 693.0, 695.0, 693.0, 693.0, 690.0, 690.0, 690.0, 692.0, 692.0, 691.0, 692.0, 694.0, 693.0, 694.0, 694.0, 693.0, 692.0, 691.0, 692.0, 693.0, 693.0, 691.0, 692.0, 692.0, 692.0, 693.0, 691.0, 693.0, 691.0, 692.0, 692.0, 692.0, 693.0, 693.0, 692.0, 691.0, 693.0, 693.0, 693.0, 694.0, 692.0, 692.0, 690.0, 693.0, 690.0, 689.0, 694.0, 694.0, 691.0, 692.0, 692.0, 690.0, 692.0, 694.0, 693.0, 694.0, 692.0, 693.0, 692.0, 692.0, 693.0, 693.0, 693.0, 693.0, 694.0, 694.0, 693.0, 692.0, 694.0, 692.0, 694.0, 691.0, 693.0, 693.0, 693.0, 691.0, 693.0, 693.0, 695.0, 691.0, 690.0, 692.0, 692.0, 693.0, 691.0, 692.0, 693.0, 691.0, 693.0, 693.0, 692.0, 692.0, 692.0, 693.0, 692.0, 692.0, 692.0, 691.0, 692.0, 691.0, 691.0, 691.0, 693.0, 692.0, 692.0, 694.0, 695.0, 693.0, 692.0, 694.0, 694.0, 693.0, 692.0, 693.0, 694.0, 694.0, 693.0], 'WindowWidth': [1518.0, 1512.0, 1514.0, 1517.0, 1514.0, 1512.0, 1511.0, 1514.0, 1515.0, 1515.0, 1518.0, 1519.0, 1516.0, 1512.0, 1511.0, 1515.0, 1515.0, 1512.0, 1507.0, 1514.0, 1509.0, 1514.0, 1517.0, 1522.0, 1517.0, 1518.0, 1512.0, 1513.0, 1513.0, 1518.0, 1516.0, 1515.0, 1518.0, 1515.0, 1514.0, 1517.0, 1515.0, 1515.0, 1518.0, 1515.0, 1510.0, 1514.0, 1517.0, 1516.0, 1516.0, 1513.0, 1516.0, 1517.0, 1521.0, 1515.0, 1516.0, 1509.0, 1508.0, 1509.0, 1513.0, 1513.0, 1512.0, 1515.0, 1519.0, 1515.0, 1518.0, 1517.0, 1517.0, 1514.0, 1513.0, 1514.0, 1516.0, 1515.0, 1512.0, 1515.0, 1514.0, 1513.0, 1515.0, 1512.0, 1514.0, 1511.0, 1513.0, 1513.0, 1515.0, 1514.0, 1514.0, 1514.0, 1511.0, 1516.0, 1517.0, 1518.0, 1518.0, 1513.0, 1512.0, 1508.0, 1514.0, 1507.0, 1507.0, 1516.0, 1516.0, 1512.0, 1513.0, 1514.0, 1510.0, 1513.0, 1518.0, 1515.0, 1517.0, 1515.0, 1517.0, 1515.0, 1514.0, 1515.0, 1515.0, 1516.0, 1515.0, 1518.0, 1517.0, 1516.0, 1514.0, 1518.0, 1514.0, 1518.0, 1513.0, 1516.0, 1515.0, 1516.0, 1511.0, 1516.0, 1515.0, 1520.0, 1511.0, 1510.0, 1512.0, 1513.0, 1516.0, 1511.0, 1514.0, 1516.0, 1512.0, 1515.0, 1515.0, 1514.0, 1514.0, 1513.0, 1515.0, 1513.0, 1513.0, 1512.0, 1512.0, 1512.0, 1511.0, 1510.0, 1510.0, 1515.0, 1513.0, 1514.0, 1517.0, 1521.0, 1516.0, 1515.0, 1518.0, 1518.0, 1516.0, 1515.0, 1517.0, 1520.0, 1520.0, 1517.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
|
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</div>
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<div class="accordion-item">
|
|
<h2 class="accordion-header" id="about-metadata-2">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
|
|
Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
|
|
<div class="accordion-body metadata-table">
|
|
<table id="about-metadata-table-2" class="table table-sm table-striped">
|
|
<tr><td colspan=3>aor</td><td>0.004191585365853658</td></tr>
|
|
<tr><td colspan=3>aqi</td><td>0.013312481524390244</td></tr>
|
|
<tr><td colspan=3>dummy_trs</td><td>0</td></tr>
|
|
<tr><td>dvars</td><td colspan=2>nstd</td><td>21.651617307607356</td></tr>
|
|
<tr><td>dvars</td><td colspan=2>std</td><td>1.299294850613497</td></tr>
|
|
<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9824708833128833</td></tr>
|
|
<tr><td colspan=3>efc</td><td>0.4383</td></tr>
|
|
<tr><td colspan=3>fber</td><td>51365.0703</td></tr>
|
|
<tr><td>fd</td><td colspan=2>mean</td><td>0.23237576749401556</td></tr>
|
|
<tr><td>fd</td><td colspan=2>num</td><td>67</td></tr>
|
|
<tr><td>fd</td><td colspan=2>perc</td><td>40.853658536585364</td></tr>
|
|
<tr><td>fwhm</td><td colspan=2>avg</td><td>2.1356991666666665</td></tr>
|
|
<tr><td>fwhm</td><td colspan=2>x</td><td>2.08643</td></tr>
|
|
<tr><td>fwhm</td><td colspan=2>y</td><td>2.30314</td></tr>
|
|
<tr><td>fwhm</td><td colspan=2>z</td><td>2.0175275</td></tr>
|
|
<tr><td colspan=3>gcor</td><td>0.0168856</td></tr>
|
|
<tr><td>gsr</td><td colspan=2>x</td><td>-0.017383301630616188</td></tr>
|
|
<tr><td>gsr</td><td colspan=2>y</td><td>0.0006339452811516821</td></tr>
|
|
<tr><td>size</td><td colspan=2>t</td><td>164</td></tr>
|
|
<tr><td>size</td><td colspan=2>x</td><td>64</td></tr>
|
|
<tr><td>size</td><td colspan=2>y</td><td>64</td></tr>
|
|
<tr><td>size</td><td colspan=2>z</td><td>32</td></tr>
|
|
<tr><td colspan=3>snr</td><td>5.000642239824618</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>tr</td><td>2.5</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>x</td><td>4.0</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>y</td><td>4.0</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>z</td><td>4.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>k</td><td>46.2523</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>mad</td><td>3.5438</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>mean</td><td>30.2818</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>median</td><td>4.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>n</td><td>105111.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>p05</td><td>1.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>p95</td><td>138.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>stdv</td><td>95.0893</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>k</td><td>4.0969</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>mad</td><td>123.1645</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>mean</td><td>863.3951</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>median</td><td>887.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>n</td><td>25961.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>p05</td><td>498.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>p95</td><td>1079.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>stdv</td><td>177.3738</td></tr>
|
|
<tr><td colspan=3>tsnr</td><td>67.17651695944369</td></tr>
|
|
</table>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
|
|
<div class="card-header m-0">
|
|
Rating widget
|
|
<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
|
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</div>
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<div class="card-body">
|
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<div class="accordion">
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcslider-head">
|
|
<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
</h2>
|
|
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
<div class="accordion-body">
|
|
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
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<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
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|
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
</ul>
|
|
</div>
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</div>
|
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</div>
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|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcartifacts-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
Record specific artifacts
|
|
</button>
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</h2>
|
|
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
<div class="accordion-body">
|
|
<fieldset id="qcartifacts-group" class="form-group">
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
</div>
|
|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
</div>
|
|
</fieldset>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
<div class="accordion-item">
|
|
<h2 class="accordion-header" id="qcextra-head">
|
|
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
Extra details
|
|
</button>
|
|
</h2>
|
|
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
<div class="accordion-body">
|
|
<div class="input-group">
|
|
<span class="input-group-text">Comments</span>
|
|
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
</div>
|
|
|
|
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
</ul>
|
|
</div> <!-- accordion-body -->
|
|
</div> <!-- accordion-collapse -->
|
|
</div> <!-- accordion-item -->
|
|
</div>
|
|
<div style="margin-top: 10px">
|
|
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
|
|
</div>
|
|
<script type="text/javascript">
|
|
var MINIMUM_RATING_TIME = 10
|
|
$('#qcslider').on('input', function() {
|
|
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 1.5 ) {
|
|
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
} else if ( $(this).val() > 3.5 ) {
|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |