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<title>sub-CTS204_task-restfixationfixed_bold :: MRIQC's BOLD fMRI report</title>
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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_subject-CTS204_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-stdev_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-stdev_bold.svg" target="_blank">sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-stdev_bold.svg</a></small>
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<div id="datatype-figures_desc-background_subject-CTS204_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-background_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-background_bold.svg" target="_blank">sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-background_bold.svg</a></small>
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<div id="datatype-figures_desc-zoomed_subject-CTS204_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-zoomed_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-zoomed_bold.svg" target="_blank">sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-zoomed_bold.svg</a></small>
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<div id="datatype-figures_desc-carpet_subject-CTS204_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-carpet_bold.svg" style="width: 100%" />
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<small>Get figure file: <a href="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-carpet_bold.svg" target="_blank">sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-carpet_bold.svg</a></small>
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<div id="Extended echo-wise reports" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
<div id="datatype-figures_desc-mean_subject-CTS204_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-mean_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-mean_bold.svg" target="_blank">sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-mean_bold.svg</a></small>
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<div id="Extended reports shared across echos" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
<div id="datatype-figures_desc-brainmask_subject-CTS204_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-brainmask_bold.svg" style="width: 100%" />
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<small>Get figure file: <a href="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-brainmask_bold.svg" target="_blank">sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-brainmask_bold.svg</a></small>
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<div id="datatype-figures_desc-norm_subject-CTS204_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-norm_bold.svg" target="_blank">sub-CTS204/figures/sub-CTS204_task-restfixationfixed_desc-norm_bold.svg</a></small>
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<div id="About" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
reconstructing the provenance of the corresponding derivatives.
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<table id="about-metadata-table-0" class="table table-sm table-striped">
<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-CTS204/func/sub-CTS204_task-restfixationfixed_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>c4e13c5194c4a6aaa25b11ac1c5fd2d1</td></tr>
</table>
</div>
</div>
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Dataset Information
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</h2>
<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td colspan=2>AcquisitionMatrixPE</td><td>64</td></tr>
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
<tr><td colspan=2>AcquisitionTime</td><td>16:41:38.767500</td></tr>
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>26.483</td></tr>
<tr><td colspan=2>BaseResolution</td><td>64</td></tr>
<tr><td colspan=2>BodyPartExamined</td><td>HEAD</td></tr>
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20171017 GCC6.3.0</td></tr>
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000590001</td></tr>
<tr><td colspan=2>DeviceSerialNumber</td><td>35177</td></tr>
<tr><td colspan=2>DwellTime</td><td>4.1e-06</td></tr>
<tr><td colspan=2>EchoTime</td><td>0.027</td></tr>
<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.000590001</td></tr>
<tr><td colspan=2>FlipAngle</td><td>90</td></tr>
<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.996562, 0.0425437, 0.071097, -0.0506399, 0.991927, 0.116258]</td></tr>
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']</td></tr>
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td colspan=2>InstitutionAddress</td><td>Scott_Ave._4525_St._Louis_MO_US_63110</td></tr>
<tr><td colspan=2>InstitutionName</td><td>Washington_University</td></tr>
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
<tr><td colspan=2>ManufacturersModelName</td><td>TrioTim</td></tr>
<tr><td colspan=2>Modality</td><td>MR</td></tr>
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td colspan=2>PhaseEncodingSteps</td><td>64</td></tr>
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
<tr><td colspan=2>PixelBandwidth</td><td>1905</td></tr>
<tr><td colspan=2>ProcedureStepDescription</td><td>head_GREENE</td></tr>
<tr><td colspan=2>ProtocolName</td><td>ep2d_bold_nonad_rest</td></tr>
<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
<tr><td colspan=2>ReceiveCoilName</td><td>HeadMatrix</td></tr>
<tr><td colspan=2>ReconMatrixPE</td><td>64</td></tr>
<tr><td colspan=2>RepetitionTime</td><td>2.5</td></tr>
<tr><td colspan=2>SAR</td><td>0.121041</td></tr>
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
<tr><td colspan=2>SequenceName</td><td>_epfid2d1_64</td></tr>
<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
<tr><td colspan=2>SeriesDescription</td><td>ep2d_bold_nonad_rest</td></tr>
<tr><td colspan=2>SeriesNumber</td><td>10</td></tr>
<tr><td colspan=2>ShimSetting</td><td>[-214, -19555, 7923, -35, -125, -869, 348, -104]</td></tr>
<tr><td colspan=2>SliceThickness</td><td>4</td></tr>
<tr><td colspan=2>SliceTiming</td><td>[1.255, 0, 1.335, 0.08, 1.4125, 0.1575, 1.49, 0.2375, 1.57, 0.315, 1.6475, 0.3925, 1.7275, 0.4725, 1.805, 0.55, 1.8825, 0.6275, 1.9625, 0.7075, 2.04, 0.785, 2.1175, 0.865, 2.1975, 0.9425, 2.275, 1.02, 2.355, 1.1, 2.4325, 1.1775]</td></tr>
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_B17</td></tr>
<tr><td colspan=2>SpacingBetweenSlices</td><td>4</td></tr>
<tr><td colspan=2>StationName</td><td>MRC35177</td></tr>
<tr><td colspan=2>TaskName</td><td>restfixationfixed</td></tr>
<tr><td colspan=2>TotalReadoutTime</td><td>0.0371701</td></tr>
<tr><td colspan=2>TxRefAmp</td><td>343.087</td></tr>
<tr><td>dcmmeta</td><td>affine</td><td>[[-3.9862468242645264, -0.20255963504314423, 0.2623080313205719, 142.04489135742188], [-0.17017464339733124, 3.9677090644836426, 0.4778331518173218, -114.61013793945312], [0.2843880355358124, -0.46503084897994995, 3.9626834392547607, -34.47274398803711], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>shape</td><td>[64, 64, 32, 164]</td></tr>
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
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'164742.859000', '164745.359000', '164747.859000', '164750.359000', '164752.859000', '164755.359000', '164757.859000', '164800.359000', '164802.859000', '164805.359000', '164807.859000', '164810.359000', '164812.859000', '164815.359000', '164817.859000', '164820.359000', '164822.859000', '164825.359000', '164827.390000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'LargestImagePixelValue': [1727, 1633, 1412, 1573, 1419, 1459, 1792, 1429, 1409, 1409, 1433, 1693, 1482, 1491, 1582, 1658, 1663, 1643, 1589, 1540, 1524, 1437, 1462, 1541, 1509, 1508, 1567, 1664, 1676, 1687, 1579, 1650, 1399, 1404, 1427, 1521, 1474, 1516, 1436, 1411, 1472, 1579, 1394, 1690, 1671, 1724, 1575, 1656, 1588, 1683, 1826, 1579, 1551, 1397, 1405, 1461, 1709, 1905, 1503, 1414, 1518, 1531, 1516, 1584, 1611, 1416, 1499, 1460, 1437, 1410, 1413, 1433, 1482, 1580, 1617, 1547, 1555, 1560, 1594, 1416, 1401, 1442, 1479, 1573, 1606, 1753, 1558, 1421, 1499, 1425, 1464, 1408, 1413, 1448, 1431, 1406, 1401, 1395, 1586, 1705, 1575, 1552, 1568, 1649, 1737, 1553, 1443, 1445, 1511, 1598, 1534, 1502, 1591, 1653, 1400, 1395, 1402, 1407, 1532, 1413, 1422, 1410, 1715, 1416, 1650, 1421, 1487, 1641, 1619, 1601, 1421, 1425, 1430, 1413, 1430, 1611, 1823, 1407, 1419, 1828, 1491, 1432, 1397, 1412, 1414, 1871, 1428, 1482, 1419, 1507, 1607, 1421, 1752, 1422, 1401, 1424, 1596, 1590, 1412, 1406, 1452, 1615, 1431, 1419], 'WindowCenter': [627.0, 625.0, 625.0, 626.0, 625.0, 624.0, 626.0, 624.0, 624.0, 626.0, 624.0, 625.0, 624.0, 625.0, 625.0, 627.0, 625.0, 624.0, 624.0, 624.0, 624.0, 625.0, 625.0, 625.0, 625.0, 626.0, 626.0, 626.0, 626.0, 625.0, 624.0, 625.0, 625.0, 625.0, 624.0, 627.0, 625.0, 625.0, 623.0, 624.0, 623.0, 626.0, 626.0, 625.0, 625.0, 625.0, 625.0, 625.0, 625.0, 627.0, 626.0, 625.0, 623.0, 624.0, 624.0, 625.0, 626.0, 625.0, 624.0, 624.0, 627.0, 624.0, 623.0, 625.0, 627.0, 625.0, 625.0, 626.0, 624.0, 624.0, 622.0, 625.0, 625.0, 624.0, 625.0, 625.0, 624.0, 626.0, 624.0, 625.0, 623.0, 624.0, 625.0, 624.0, 625.0, 625.0, 624.0, 625.0, 625.0, 624.0, 625.0, 624.0, 624.0, 624.0, 624.0, 624.0, 624.0, 625.0, 626.0, 625.0, 624.0, 625.0, 625.0, 625.0, 626.0, 624.0, 623.0, 625.0, 625.0, 624.0, 625.0, 624.0, 626.0, 625.0, 623.0, 625.0, 624.0, 623.0, 625.0, 624.0, 623.0, 624.0, 625.0, 623.0, 625.0, 624.0, 626.0, 625.0, 625.0, 625.0, 625.0, 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</table>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="about-metadata-2">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
Extracted Image quality metrics (IQMs)
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</h2>
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.0012618902439024391</td></tr>
<tr><td colspan=3>aqi</td><td>0.004922080487804878</td></tr>
<tr><td colspan=3>dummy_trs</td><td>0</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>15.256334445337426</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.2238744812883433</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9758108054601224</td></tr>
<tr><td colspan=3>efc</td><td>0.3768</td></tr>
<tr><td colspan=3>fber</td><td>61249.8984</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.0866480157084896</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>2</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>1.2195121951219512</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>2.117231037883621</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>2.004205</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>2.2884175</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>2.0590706136508627</td></tr>
<tr><td colspan=3>gcor</td><td>0.0261116</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>-0.025539228692650795</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.0090382294729352</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>164</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>64</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>64</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>32</td></tr>
<tr><td colspan=3>snr</td><td>4.3697176002857105</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>2.5</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>4.0</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>4.0</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>3.9999988079071045</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>39.1209</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>2.0341</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>21.2531</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>3.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>111979.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>1.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>115.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>56.011</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>3.0432</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>111.602</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>784.861</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>824.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>19093.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>346.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>996.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>188.5656</td></tr>
<tr><td colspan=3>tsnr</td><td>118.72981341183186</td></tr>
</table>
</div>
</div>
</div>
</div>
</div>
</div>
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Rating widget
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<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
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<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
</ul>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="qcartifacts-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
Record specific artifacts
</button>
</h2>
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
<div class="accordion-body">
<fieldset id="qcartifacts-group" class="form-group">
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>