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<title>sub-CTS203_task-restfixationfixed_bold :: MRIQC's BOLD fMRI report</title>
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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_subject-CTS203_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-stdev_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-stdev_bold.svg" target="_blank">sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-stdev_bold.svg</a></small>
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<div id="datatype-figures_desc-background_subject-CTS203_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-background_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-background_bold.svg" target="_blank">sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-background_bold.svg</a></small>
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<div id="datatype-figures_desc-zoomed_subject-CTS203_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-zoomed_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-zoomed_bold.svg" target="_blank">sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-zoomed_bold.svg</a></small>
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<div id="datatype-figures_desc-carpet_subject-CTS203_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-carpet_bold.svg" style="width: 100%" />
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<small>Get figure file: <a href="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-carpet_bold.svg" target="_blank">sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-carpet_bold.svg</a></small>
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<div id="Extended echo-wise reports" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
<div id="datatype-figures_desc-mean_subject-CTS203_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-mean_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-mean_bold.svg" target="_blank">sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-mean_bold.svg</a></small>
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<div id="Extended reports shared across echos" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
<div id="datatype-figures_desc-brainmask_subject-CTS203_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-brainmask_bold.svg" style="width: 100%" />
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<small>Get figure file: <a href="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-brainmask_bold.svg" target="_blank">sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-brainmask_bold.svg</a></small>
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<div id="datatype-figures_desc-norm_subject-CTS203_suffix-bold_task-restfixationfixed" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-norm_bold.svg" target="_blank">sub-CTS203/figures/sub-CTS203_task-restfixationfixed_desc-norm_bold.svg</a></small>
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<div id="About" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
reconstructing the provenance of the corresponding derivatives.
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<table id="about-metadata-table-0" class="table table-sm table-striped">
<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-CTS203/func/sub-CTS203_task-restfixationfixed_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>8a773117ca94dcf24bf82f6abf79aad1</td></tr>
</table>
</div>
</div>
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Dataset Information
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</h2>
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<div class="accordion-body metadata-table">
<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td colspan=2>AcquisitionMatrixPE</td><td>64</td></tr>
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
<tr><td colspan=2>AcquisitionTime</td><td>13:36:56.722500</td></tr>
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>26.483</td></tr>
<tr><td colspan=2>BaseResolution</td><td>64</td></tr>
<tr><td colspan=2>BodyPartExamined</td><td>HEAD</td></tr>
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20171017 GCC6.3.0</td></tr>
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.000590001</td></tr>
<tr><td colspan=2>DeviceSerialNumber</td><td>35177</td></tr>
<tr><td colspan=2>DwellTime</td><td>4.1e-06</td></tr>
<tr><td colspan=2>EchoTime</td><td>0.027</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.996669, -0.0739124, -0.0344799, 0.0789644, 0.980276, 0.181174]</td></tr>
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']</td></tr>
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td colspan=2>InstitutionAddress</td><td>Scott_Ave._4525_St._Louis_MO_US_63110</td></tr>
<tr><td colspan=2>InstitutionName</td><td>Washington_University</td></tr>
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
<tr><td colspan=2>ManufacturersModelName</td><td>TrioTim</td></tr>
<tr><td colspan=2>Modality</td><td>MR</td></tr>
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td colspan=2>PhaseEncodingSteps</td><td>64</td></tr>
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
<tr><td colspan=2>PixelBandwidth</td><td>1905</td></tr>
<tr><td colspan=2>ProcedureStepDescription</td><td>head_GREENE</td></tr>
<tr><td colspan=2>ProtocolName</td><td>ep2d_bold_nonad_rest</td></tr>
<tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%_ep2d_bold</td></tr>
<tr><td colspan=2>ReceiveCoilName</td><td>HeadMatrix</td></tr>
<tr><td colspan=2>ReconMatrixPE</td><td>64</td></tr>
<tr><td colspan=2>RepetitionTime</td><td>2.5</td></tr>
<tr><td colspan=2>SAR</td><td>0.162988</td></tr>
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
<tr><td colspan=2>SequenceName</td><td>_epfid2d1_64</td></tr>
<tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
<tr><td colspan=2>SeriesDescription</td><td>ep2d_bold_nonad_rest</td></tr>
<tr><td colspan=2>SeriesNumber</td><td>7</td></tr>
<tr><td colspan=2>ShimSetting</td><td>[-224, -19688, 7998, 280, 88, -552, 173, -28]</td></tr>
<tr><td colspan=2>SliceThickness</td><td>4</td></tr>
<tr><td colspan=2>SliceTiming</td><td>[1.255, 0, 1.3325, 0.0775, 1.4125, 0.1575, 1.49, 0.235, 1.5675, 0.3125, 1.6475, 0.3925, 1.725, 0.47, 1.8025, 0.55, 1.8825, 0.6275, 1.96, 0.705, 2.04, 0.785, 2.1175, 0.8625, 2.195, 0.94, 2.275, 1.02, 2.3525, 1.0975, 2.43, 1.175]</td></tr>
<tr><td colspan=2>SoftwareVersions</td><td>syngo_MR_B17</td></tr>
<tr><td colspan=2>SpacingBetweenSlices</td><td>4</td></tr>
<tr><td colspan=2>StationName</td><td>MRC35177</td></tr>
<tr><td colspan=2>TaskName</td><td>restfixationfixed</td></tr>
<tr><td colspan=2>TotalReadoutTime</td><td>0.0371701</td></tr>
<tr><td colspan=2>TxRefAmp</td><td>341.225</td></tr>
<tr><td>dcmmeta</td><td>affine</td><td>[[-3.9866740703582764, 0.31585779786109924, -0.08163540065288544, 118.20162200927734], [0.29564952850341797, 3.9211032390594482, 0.7331713438034058, -140.41909790039062], [-0.13791970908641815, -0.724695086479187, 3.931385040283203, 5.164867401123047], [0.0, 0.0, 0.0, 1.0]]</td></tr>
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<tr><td>dcmmeta</td><td>shape</td><td>[64, 64, 32, 164]</td></tr>
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
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'133811.328000', '133813.828000', '133816.328000', '133818.828000', '133821.328000', '133823.828000', '133826.328000', '133828.828000', '133831.328000', '133833.828000', '133836.328000', '133838.828000', '133841.328000', '133843.828000', '133846.328000', '133848.828000', '133851.328000', '133853.828000', '133856.328000', '133858.828000', '133901.328000', '133903.828000', '133906.328000', '133908.828000', '133911.328000', '133913.828000', '133916.328000', '133918.828000', '133921.328000', '133923.828000', '133926.328000', '133928.828000', '133931.328000', '133933.828000', '133936.328000', '133938.828000', '133941.328000', '133943.828000', '133946.328000', '133948.828000', '133951.328000', '133953.828000', '133956.328000', '133958.828000', '134001.328000', '134003.828000', '134006.328000', '134008.828000', '134011.328000', '134013.828000', '134016.328000', '134018.828000', '134021.328000', '134023.828000', '134026.328000', '134028.828000', '134031.343000', '134033.828000', '134036.328000', '134038.828000', '134041.328000', '134043.828000', '134046.328000', '134048.828000', '134051.328000', '134053.828000', '134056.328000', '134058.828000', '134101.328000', '134103.828000', '134106.328000', '134108.828000', '134111.328000', '134113.828000', '134116.328000', '134118.828000', '134121.328000', '134123.828000', '134126.328000', '134128.828000', '134131.328000', '134133.828000', '134136.328000', '134138.828000', '134141.328000', '134143.828000', '134146.328000', '134148.828000', '134151.343000', '134153.828000', '134156.328000', '134158.828000', '134201.328000', '134203.828000', '134206.328000', '134208.828000', '134211.328000', '134213.828000', '134216.328000', '134218.828000', '134221.328000', '134223.828000', '134226.328000', '134228.828000', '134231.328000', '134233.828000', '134236.328000', '134238.828000', '134241.328000', '134243.828000', '134246.328000', '134248.828000', '134251.328000', '134253.828000', '134256.328000', '134258.828000', '134301.328000', '134303.828000', '134306.328000', '134308.828000', '134311.328000', '134313.828000', '134316.328000', '134318.828000', '134321.328000', '134323.828000', '134326.328000', '134328.828000', '134331.328000', '134333.828000', '134336.328000', '134338.828000', '134341.328000', '134343.828000', '134346.218000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'LargestImagePixelValue': [1078, 1001, 1020, 1125, 1005, 1015, 1068, 970, 960, 1054, 1117, 958, 953, 980, 1218, 1035, 1011, 1007, 1031, 947, 1092, 1009, 1031, 965, 1052, 1038, 994, 1139, 1118, 1013, 1071, 996, 1120, 1116, 1174, 1138, 1052, 1150, 1063, 1222, 1044, 1173, 1160, 1214, 1071, 1057, 1112, 1231, 1025, 1103, 1074, 1104, 1227, 1138, 1034, 942, 1029, 1181, 1190, 1196, 978, 1059, 1103, 1003, 1176, 1063, 1063, 1055, 1072, 1210, 1028, 1199, 1159, 1052, 1184, 1075, 1078, 1080, 1017, 1210, 1071, 975, 1144, 1021, 1036, 983, 1102, 1087, 1043, 1025, 1120, 1155, 1017, 1219, 972, 1076, 1088, 1103, 1033, 1014, 1076, 1123, 1152, 1040, 1060, 999, 1129, 1240, 1053, 1091, 1353, 1022, 1044, 1087, 1032, 993, 1047, 1039, 1158, 1308, 1061, 959, 959, 960, 940, 972, 960, 940, 1037, 1024, 957, 942, 1079, 1011, 1144, 1008, 974, 988, 969, 964, 1001, 1055, 1203, 1034, 969, 1096, 1255, 1197, 1271, 998, 1031, 1068, 1083, 1310, 1607, 1131, 1000, 1213, 1015, 985, 1137, 1145, 1195, 1038], 'WindowCenter': [518.0, 517.0, 517.0, 518.0, 516.0, 519.0, 519.0, 520.0, 517.0, 518.0, 517.0, 515.0, 514.0, 518.0, 519.0, 517.0, 516.0, 516.0, 520.0, 518.0, 518.0, 517.0, 518.0, 519.0, 518.0, 518.0, 517.0, 519.0, 518.0, 521.0, 519.0, 518.0, 519.0, 516.0, 520.0, 520.0, 519.0, 516.0, 515.0, 513.0, 516.0, 521.0, 519.0, 519.0, 518.0, 516.0, 517.0, 518.0, 517.0, 519.0, 517.0, 517.0, 516.0, 515.0, 517.0, 513.0, 514.0, 519.0, 516.0, 520.0, 516.0, 516.0, 519.0, 519.0, 518.0, 516.0, 518.0, 517.0, 517.0, 519.0, 517.0, 518.0, 517.0, 519.0, 517.0, 516.0, 518.0, 518.0, 519.0, 521.0, 514.0, 516.0, 517.0, 517.0, 518.0, 518.0, 517.0, 517.0, 517.0, 520.0, 519.0, 516.0, 515.0, 517.0, 516.0, 516.0, 518.0, 518.0, 513.0, 518.0, 516.0, 518.0, 516.0, 517.0, 516.0, 475.0, 523.0, 510.0, 515.0, 481.0, 491.0, 474.0, 510.0, 509.0, 489.0, 505.0, 494.0, 500.0, 494.0, 492.0, 504.0, 507.0, 503.0, 509.0, 494.0, 507.0, 511.0, 511.0, 512.0, 510.0, 509.0, 509.0, 511.0, 510.0, 512.0, 510.0, 508.0, 512.0, 510.0, 496.0, 515.0, 518.0, 523.0, 520.0, 511.0, 522.0, 516.0, 511.0, 515.0, 513.0, 511.0, 500.0, 502.0, 525.0, 517.0, 499.0, 506.0, 522.0, 517.0, 520.0, 521.0, 520.0, 521.0, 519.0], 'WindowWidth': [1088.0, 1087.0, 1087.0, 1088.0, 1085.0, 1092.0, 1091.0, 1094.0, 1087.0, 1090.0, 1086.0, 1083.0, 1082.0, 1088.0, 1090.0, 1087.0, 1085.0, 1085.0, 1093.0, 1089.0, 1089.0, 1087.0, 1088.0, 1091.0, 1089.0, 1089.0, 1088.0, 1090.0, 1088.0, 1096.0, 1090.0, 1090.0, 1091.0, 1083.0, 1092.0, 1093.0, 1092.0, 1084.0, 1083.0, 1078.0, 1084.0, 1095.0, 1090.0, 1091.0, 1089.0, 1084.0, 1086.0, 1089.0, 1087.0, 1091.0, 1086.0, 1088.0, 1084.0, 1082.0, 1087.0, 1079.0, 1080.0, 1090.0, 1084.0, 1092.0, 1085.0, 1084.0, 1091.0, 1091.0, 1088.0, 1085.0, 1088.0, 1086.0, 1086.0, 1089.0, 1086.0, 1088.0, 1086.0, 1090.0, 1085.0, 1083.0, 1088.0, 1089.0, 1091.0, 1095.0, 1081.0, 1085.0, 1087.0, 1087.0, 1088.0, 1088.0, 1086.0, 1087.0, 1087.0, 1092.0, 1090.0, 1085.0, 1084.0, 1086.0, 1084.0, 1084.0, 1088.0, 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</table>
</div>
</div>
</div>
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<h2 class="accordion-header" id="about-metadata-2">
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Extracted Image quality metrics (IQMs)
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</h2>
<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
<div class="accordion-body metadata-table">
<table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.1072523780487805</td></tr>
<tr><td colspan=3>aqi</td><td>0.18193434512195122</td></tr>
<tr><td colspan=3>dummy_trs</td><td>0</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>63.1591074482822</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.3296204644171774</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>1.6989812105521476</td></tr>
<tr><td colspan=3>efc</td><td>0.4205</td></tr>
<tr><td colspan=3>fber</td><td>41221.5469</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>1.5962935428077567</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>108</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>65.85365853658537</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>2.584369358858512</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>2.5265</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>2.808275</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>2.4183330765755358</td></tr>
<tr><td colspan=3>gcor</td><td>0.137925</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>-0.026712747290730476</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.0016870079562067986</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>164</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>64</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>64</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>32</td></tr>
<tr><td colspan=3>snr</td><td>5.2937036539662525</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>2.5</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>4.0</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>4.0</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>3.9999990463256836</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>44.5552</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>2.7663</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>19.8283</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>3.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>108560.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>1.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>107.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>54.6879</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>2.965</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>73.0001</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>540.4406</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>561.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>22512.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>313.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>666.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>105.9726</td></tr>
<tr><td colspan=3>tsnr</td><td>11.146397763630375</td></tr>
</table>
</div>
</div>
</div>
</div>
</div>
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Rating widget
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<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
</h2>
<div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
<div class="accordion-body">
<input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
</ul>
</div>
</div>
</div>
<div class="accordion-item">
<h2 class="accordion-header" id="qcartifacts-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
Record specific artifacts
</button>
</h2>
<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
<div class="accordion-body">
<fieldset id="qcartifacts-group" class="form-group">
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>