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Code Issues 14 Pull requests 2 Packages Activity Actions

[CI]: Disable FSL installation for junifer-ci Docker image #467

Merged
synchon merged 2 commits from chore/disable-fsl-docker-ci into main 2025-09-19 15:26:11 +00:00
Conversation 1 Commits 2 Files changed 2 +9 -7
2 changed files with 9 additions and 7 deletions
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15
Dockerfile-ci
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@ -60,13 +60,14 @@ ENV PATH="/opt/afni/bin:$PATH"
# Patch gsl
RUN ln -s /usr/lib/x86_64-linux-gnu/libgsl.so.27 /usr/lib/x86_64-linux-gnu/libgsl.so.23
# Add FSL
RUN curl https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fslinstaller.py | \
python - -d /opt/fsl/ --skip_registration
# Set env vars for FSL
ENV FSLDIR=/opt/fsl \
FSLOUTPUTTYPE=NIFTI_GZ \
PATH="/opt/fsl/share/fsl/bin:$PATH"
# disabled as standard github runner fails to install due to insufficient space on device
# # Add FSL
# RUN curl https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fslinstaller.py | \
# python - -d /opt/fsl/ --skip_registration
# # Set env vars for FSL
# ENV FSLDIR=/opt/fsl \
# FSLOUTPUTTYPE=NIFTI_GZ \
# PATH="/opt/fsl/share/fsl/bin:$PATH"
# Clean apt cache
RUN apt-get autoremove --purge && apt-get clean

1
docs/changes/newsfragments/467.misc Normal file
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@ -0,0 +1 @@
Disable FSL installation for `junifer-ci` Docker image build with `junifer-data` v4 by `Synchon Mandal`_