[ENH]: Add helper function for getting correct interpolator for masks #416

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synchon merged 6 commits from fix/correct-interpolation-for-mask into main 2024-12-09 12:41:00 +00:00

Conversation 2 Commits 6 Files changed 3 +84 -21

synchon commented 2024-12-06 13:52:58 +00:00 (Migrated from github.com)

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• description of feature/fix
• tests added/passed
• add an entry for the latest changes

This PR adds a helper function for getting correct interpolation method for masks resampling via nilearn.

* [x] description of feature/fix * [x] tests added/passed * [x] add an entry for the latest changes This PR adds a helper function for getting correct interpolation method for masks resampling via nilearn.

github-actions[bot] commented 2024-12-06 14:50:35 +00:00 (Migrated from github.com)

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PR Preview Action v1.4.8
Preview removed because the pull request was closed.
2024-12-09 13:34 UTC

[PR Preview Action](https://github.com/rossjrw/pr-preview-action) v1.4.8 :---: Preview removed because the pull request was closed. 2024-12-09 13:34 UTC <!-- Sticky Pull Request Commentpr-preview -->

codecov[bot] commented 2024-12-09 11:21:38 +00:00 (Migrated from github.com)

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Codecov Report

Attention: Patch coverage is 0% with 17 lines in your changes missing coverage. Please review.

Project coverage is 0.01%. Comparing base (1102920) to head (ea9f435).
Report is 7 commits behind head on main.

Files with missing lines	Patch %	Lines
junifer/data/masks/_masks.py	0.00%	7 Missing ⚠️
junifer/data/masks/_ants_mask_warper.py	0.00%	5 Missing ⚠️
junifer/data/masks/_fsl_mask_warper.py	0.00%	5 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff            @@
##            main    #416      +/-   ##
========================================
- Coverage   0.01%   0.01%   -0.01%     
========================================
  Files        133     133              
  Lines       5736    5750      +14     
========================================
  Hits           1       1              
- Misses      5735    5749      +14     

Flag	Coverage Δ
junifer	0.00% <0.00%> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines	Coverage Δ
junifer/data/masks/_ants_mask_warper.py	0.00% <0.00%> (ø)
junifer/data/masks/_fsl_mask_warper.py	0.00% <0.00%> (ø)
junifer/data/masks/_masks.py	0.00% <0.00%> (ø)

## [Codecov](https://app.codecov.io/gh/juaml/junifer/pull/416?dropdown=coverage&src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) Report Attention: Patch coverage is `0%` with `17 lines` in your changes missing coverage. Please review. > Project coverage is 0.01%. Comparing base [(`1102920`)](https://app.codecov.io/gh/juaml/junifer/commit/11029201e1ded1029c5b75d4b54d7600b1799f70?dropdown=coverage&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) to head [(`ea9f435`)](https://app.codecov.io/gh/juaml/junifer/commit/ea9f435171ae1629eab82a24dea3699de5ddc3b7?dropdown=coverage&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml). > Report is 7 commits behind head on main. | [Files with missing lines](https://app.codecov.io/gh/juaml/junifer/pull/416?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Patch % | Lines | |---|---|---| | [junifer/data/masks/\_masks.py](https://app.codecov.io/gh/juaml/junifer/pull/416?src=pr&el=tree&filepath=junifer%2Fdata%2Fmasks%2F_masks.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9kYXRhL21hc2tzL19tYXNrcy5weQ==) | 0.00% | [7 Missing :warning: ](https://app.codecov.io/gh/juaml/junifer/pull/416?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | | [junifer/data/masks/\_ants\_mask\_warper.py](https://app.codecov.io/gh/juaml/junifer/pull/416?src=pr&el=tree&filepath=junifer%2Fdata%2Fmasks%2F_ants_mask_warper.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9kYXRhL21hc2tzL19hbnRzX21hc2tfd2FycGVyLnB5) | 0.00% | [5 Missing :warning: ](https://app.codecov.io/gh/juaml/junifer/pull/416?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | | [junifer/data/masks/\_fsl\_mask\_warper.py](https://app.codecov.io/gh/juaml/junifer/pull/416?src=pr&el=tree&filepath=junifer%2Fdata%2Fmasks%2F_fsl_mask_warper.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9kYXRhL21hc2tzL19mc2xfbWFza193YXJwZXIucHk=) | 0.00% | [5 Missing :warning: ](https://app.codecov.io/gh/juaml/junifer/pull/416?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | <details><summary>Additional details and impacted files</summary> [](https://app.codecov.io/gh/juaml/junifer/pull/416?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) ```diff @@ Coverage Diff @@ ## main #416 +/- ## ======================================== - Coverage 0.01% 0.01% -0.01% ======================================== Files 133 133 Lines 5736 5750 +14 ======================================== Hits 1 1 - Misses 5735 5749 +14 ``` | [Flag](https://app.codecov.io/gh/juaml/junifer/pull/416/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Coverage Δ | | |---|---|---| | [junifer](https://app.codecov.io/gh/juaml/junifer/pull/416/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | `0.00% <0.00%> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files with missing lines](https://app.codecov.io/gh/juaml/junifer/pull/416?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Coverage Δ | | |---|---|---| | [junifer/data/masks/\_ants\_mask\_warper.py](https://app.codecov.io/gh/juaml/junifer/pull/416?src=pr&el=tree&filepath=junifer%2Fdata%2Fmasks%2F_ants_mask_warper.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9kYXRhL21hc2tzL19hbnRzX21hc2tfd2FycGVyLnB5) | `0.00% <0.00%> (ø)` | | | [junifer/data/masks/\_fsl\_mask\_warper.py](https://app.codecov.io/gh/juaml/junifer/pull/416?src=pr&el=tree&filepath=junifer%2Fdata%2Fmasks%2F_fsl_mask_warper.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9kYXRhL21hc2tzL19mc2xfbWFza193YXJwZXIucHk=) | `0.00% <0.00%> (ø)` | | | [junifer/data/masks/\_masks.py](https://app.codecov.io/gh/juaml/junifer/pull/416?src=pr&el=tree&filepath=junifer%2Fdata%2Fmasks%2F_masks.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9kYXRhL21hc2tzL19tYXNrcy5weQ==) | `0.00% <0.00%> (ø)` | | </details>

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