juaml/junifer
Watch
3
0
Fork
You've already forked junifer
 0
Code Issues 14 Pull requests 2 Packages Activity Actions

[ENH]: Simplify space warping for parcellations and masks #414

Merged
synchon merged 7 commits from fix/non-native-data-warping into main 2024-12-09 10:18:03 +00:00
Conversation 3 Commits 7 Files changed 4 +45 -45
synchon commented 2024-12-06 12:49:39 +00:00 (Migrated from github.com)
Copy link
  • description of feature/fix
  • tests added/passed
  • add an entry for the latest changes

This PR simplifies space warping for parcellations and masks.

* [x] description of feature/fix * [x] tests added/passed * [x] add an entry for the latest changes This PR simplifies space warping for parcellations and masks.
fraimondo (Migrated from github.com) reviewed 2024-12-06 12:49:39 +00:00
codecov[bot] commented 2024-12-06 12:50:08 +00:00 (Migrated from github.com)
Copy link

Codecov Report

Attention: Patch coverage is 0% with 17 lines in your changes missing coverage. Please review.

Project coverage is 0.01%. Comparing base (12ecdb2) to head (c93d589).
Report is 8 commits behind head on main.

Files with missing lines Patch % Lines
junifer/data/masks/_masks.py 0.00% 9 Missing ⚠️
junifer/data/parcellations/_parcellations.py 0.00% 8 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@          Coverage Diff          @@
##            main    #414   +/-   ##
=====================================
  Coverage   0.01%   0.01%           
=====================================
  Files        133     133           
  Lines       5719    5718    -1     
=====================================
  Hits           1       1           
+ Misses      5718    5717    -1
Flag Coverage Δ
docs 100.00% <ø> (ø)
junifer 0.00% <0.00%> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
junifer/data/parcellations/_parcellations.py 0.00% <0.00%> (ø)
junifer/data/masks/_masks.py 0.00% <0.00%> (ø)
## [Codecov](https://app.codecov.io/gh/juaml/junifer/pull/414?dropdown=coverage&src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) Report Attention: Patch coverage is `0%` with `17 lines` in your changes missing coverage. Please review. > Project coverage is 0.01%. Comparing base [(`12ecdb2`)](https://app.codecov.io/gh/juaml/junifer/commit/12ecdb259df2b62d8811d1d0f7f08f6ac6eaa853?dropdown=coverage&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) to head [(`c93d589`)](https://app.codecov.io/gh/juaml/junifer/commit/c93d589db094d33cb855141224f60b9100bed604?dropdown=coverage&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml). > Report is 8 commits behind head on main. | [Files with missing lines](https://app.codecov.io/gh/juaml/junifer/pull/414?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Patch % | Lines | |---|---|---| | [junifer/data/masks/\_masks.py](https://app.codecov.io/gh/juaml/junifer/pull/414?src=pr&el=tree&filepath=junifer%2Fdata%2Fmasks%2F_masks.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9kYXRhL21hc2tzL19tYXNrcy5weQ==) | 0.00% | [9 Missing :warning: ](https://app.codecov.io/gh/juaml/junifer/pull/414?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | | [junifer/data/parcellations/\_parcellations.py](https://app.codecov.io/gh/juaml/junifer/pull/414?src=pr&el=tree&filepath=junifer%2Fdata%2Fparcellations%2F_parcellations.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9kYXRhL3BhcmNlbGxhdGlvbnMvX3BhcmNlbGxhdGlvbnMucHk=) | 0.00% | [8 Missing :warning: ](https://app.codecov.io/gh/juaml/junifer/pull/414?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | <details><summary>Additional details and impacted files</summary> [![Impacted file tree graph](https://app.codecov.io/gh/juaml/junifer/pull/414/graphs/tree.svg?width=650&height=150&src=pr&token=5H21JuZXMw&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml)](https://app.codecov.io/gh/juaml/junifer/pull/414?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) ```diff @@ Coverage Diff @@ ## main #414 +/- ## ===================================== Coverage 0.01% 0.01% ===================================== Files 133 133 Lines 5719 5718 -1 ===================================== Hits 1 1 + Misses 5718 5717 -1 ``` | [Flag](https://app.codecov.io/gh/juaml/junifer/pull/414/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Coverage Δ | | |---|---|---| | [docs](https://app.codecov.io/gh/juaml/junifer/pull/414/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | `100.00% <ø> (ø)` | | | [junifer](https://app.codecov.io/gh/juaml/junifer/pull/414/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | `0.00% <0.00%> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files with missing lines](https://app.codecov.io/gh/juaml/junifer/pull/414?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Coverage Δ | | |---|---|---| | [junifer/data/parcellations/\_parcellations.py](https://app.codecov.io/gh/juaml/junifer/pull/414?src=pr&el=tree&filepath=junifer%2Fdata%2Fparcellations%2F_parcellations.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9kYXRhL3BhcmNlbGxhdGlvbnMvX3BhcmNlbGxhdGlvbnMucHk=) | `0.00% <0.00%> (ø)` | | | [junifer/data/masks/\_masks.py](https://app.codecov.io/gh/juaml/junifer/pull/414?src=pr&el=tree&filepath=junifer%2Fdata%2Fmasks%2F_masks.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9kYXRhL21hc2tzL19tYXNrcy5weQ==) | `0.00% <0.00%> (ø)` | | </details>
github-actions[bot] commented 2024-12-06 13:46:38 +00:00 (Migrated from github.com)
Copy link
PR Preview Action v1.4.8
🚀 Deployed preview to https://juaml.github.io/junifer/pr-preview/pr-414/
on branch gh-pages at 2024-12-09 11:28 UTC
[PR Preview Action](https://github.com/rossjrw/pr-preview-action) v1.4.8 :---: :rocket: Deployed preview to https://juaml.github.io/junifer/pr-preview/pr-414/ on branch [`gh-pages`](https://github.com/juaml/junifer/tree/gh-pages) at 2024-12-09 11:28 UTC <!-- Sticky Pull Request Commentpr-preview -->
Sign in to join this conversation.
Reviewers
No reviewers
fraimondo
Labels
Clear labels   
CRITICAL
High Priority Issue

  
Stale

   
WIP
Work in progress

  
bug
Something isn't working

  
concept
Design/Implementation concepts

  
coordinate
Issues or pull requests related to coordinates (ROIs)

  
dataset
Issues or pull requests related to datagrabbers or datasets

  
dependencies
Pull requests that update a dependency file

  
documentation
Improvements or additions to documentation

  
duplicate
This issue or pull request already exists

  
enhancement
New feature or request

  
github_actions
Pull requests that update GitHub Actions code

  
good first issue
Good for newcomers

  
help wanted
Extra attention is needed

  
invalid
This doesn't seem right

  
maintenance
Issues or pull requests related to maintenance

  
maps
Issues or pull requests related to maps (probabilistic atlases)

  
marker
Issues or pull requests related to markers

  
mask
Issues or pull requests related to masks

  
on hold
Issue waiting on other issue(s)

  
parcellation
Issues or pull requests related to parcellations (deterministic atlases)

  
preprocess
Issues or pull requests related to preprocessors

  
question
Further information is requested

  
ready
Pull request is ready for review and merge

  
storage
Issues or pull requests related to marker storage or retrieval

  
template-space
Issues or pull requests related to template spaces

  
triage
New issues waiting to be reviewed

  
wontfix
This will not be worked on

No labels
CRITICAL
Stale
WIP
bug
concept
coordinate
dataset
dependencies
documentation
duplicate
enhancement
github_actions
good first issue
help wanted
invalid
maintenance
maps
marker
mask
on hold
parcellation
preprocess
question
ready
storage
template-space
triage
wontfix
Milestone
Clear milestone
No items
No milestone
0.0.6 (alpha 5)
Assignees
Clear assignees
No assignees
1 participant
Notifications
Due date
The due date is invalid or out of range. Please use the format "yyyy-mm-dd".

No due date set.

Dependencies

No dependencies set

Reference
juaml/junifer!414
No description provided.