junifer

Synchon Mandal

update: improve DataGrabberPatterns

52691ebe2d

2026-03-31 11:37:04 +02:00

Synchon Mandal

chore: remove redundant import in fMRIPrepConfoundRemover

57de99eac1

2026-03-31 11:37:04 +02:00

Synchon Mandal

chore: lint

0a0f47e103

2026-03-31 11:37:04 +02:00

Synchon Mandal

chore: update uv.lock

5ff1a4625b

2026-03-31 11:37:04 +02:00

Synchon Mandal

chore: update docstring for DataladDataGrabber

c0af0bff56

2026-03-31 11:37:04 +02:00

Synchon Mandal

chore: clarify datagrabber parameters

2ea9928ec5

2026-03-31 11:37:04 +02:00

Synchon Mandal

fix: remove datadir from meta only for datalad-based datagrabbers

c76ac81dc1

2026-03-31 11:37:04 +02:00

Synchon Mandal

chore: fix log message formatting in DataladDataGrabber

c5ba236a4e

2026-03-31 11:37:04 +02:00

Synchon Mandal

update: improve test params for test_masks.py

0bfe505679

2026-03-31 11:37:04 +02:00

Synchon Mandal

docs: update nitpick ignore in conf.py

7657ddf677

2026-03-31 11:37:04 +02:00

Synchon Mandal

refactor: make masks param accept item or list of item

53a06844bc

2026-03-31 11:37:04 +02:00

Synchon Mandal

update: make datalad tempdir creation less prone to user defined dir conflict

66f1c2a77f

2026-03-31 11:37:04 +02:00

Synchon Mandal

docs: simplify example

0cad5bf71c

2026-03-31 11:37:03 +02:00

Synchon Mandal

docs: simplify datagrabber extension

dc7c4bc8dc

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: replace HttpUrl with AnyUrl across codebase

cec39fe8ae

2026-03-31 11:37:03 +02:00

Synchon Mandal

docs: simplify preprocessor extension

cbd7c43a86

2026-03-31 11:37:03 +02:00

Synchon Mandal

fix: correct import for ALFFParcels

24475b3bdb

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: remove redundant on declaration across markers

95374c45ce

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: improve DataType conversion in BasePreprocessor

2227c50b0a

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: improve DataType conversion in BaseMarker

c552e2e8fc

2026-03-31 11:37:03 +02:00

Synchon Mandal

refactor: make preprocess accept on and required_data_types as DataType or list of DataType

da820fd10d

2026-03-31 11:37:03 +02:00

Synchon Mandal

refactor: make markers accept on as DataType or list of DataType

767049b79b

2026-03-31 11:37:03 +02:00

Synchon Mandal

refactor: make datagrabber list params as item or list of them

f6d2af5ddd

2026-03-31 11:37:03 +02:00

Synchon Mandal

docs: clarify preprocessor extension parameters

663a3e497d

2026-03-31 11:37:03 +02:00

Synchon Mandal

refactor: make parcellation accept str or list of str across codebase

fb260764cf

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: improve logging for DataladDataGrabber

827f3ae40c

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: improve docstring for BrainPrint

8ede30a0ae

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: add missing decorator for DataladDataGrabber

423b9e59d5

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: remove unnecessary comments

ba7ec82b28

2026-03-31 11:37:03 +02:00

Synchon Mandal

refactor: allow direct usage of MultipleDataGrabber from yaml

85923ae9ad

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: improve cleanup for AFNIALFF and AFNIReHo

4dbdf29370

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: improve cleanup for WorkDirManager

e6e93cb511

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: reorganize MatrixKind

f8d1c3685d

2026-03-31 11:37:03 +02:00

Synchon Mandal

fix: conditional import for TypedDict

eca3c76204

2026-03-31 11:37:03 +02:00

Synchon Mandal

fix: conditional import for Required in queue_context_adapter.py

d08aebfe15

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: add changelog 364.enh

3862236fce

2026-03-31 11:37:03 +02:00

Synchon Mandal

docs: update extending and using docs

c1330793b2

2026-03-31 11:37:03 +02:00

Synchon Mandal

docs: update examples

bdc74c59f1

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: add guard for env.name in context adapters

f57cf89ab0

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: improve constraints for QueueContextEnv

6ece04b899

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: fix tests for api

3c4ac4a7fc

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: fix tests and data for cli

7b06245d52

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: fix tests for pipeline

fa7638ecec

2026-03-31 11:37:03 +02:00

Synchon Mandal

docs: update extending docs

9c9806939c

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: add typing_extensions to deps

c5de7c4d58

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: add missing imports

7b900adf85

2026-03-31 11:37:03 +02:00

Synchon Mandal

docs: update docs and add deps

b92c8197f3

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: add pydantic.validate_call to get_aggfunc_by_name

1e2da85979

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: improve docstrings

75519c0684

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: fix method in DataDispatcher

0d167437db

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: lean up tests in configs

461b5eb36b

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: add py.typed to typing

0b866b4584

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: make external import lazy

6326a5f11d

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: make configs import lazy

8c5dd94a12

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: update docstring for QueueContextAdapter

99a2d23a3a

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: make HTCondorAdapter pydantic model

daae9aa65a

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: make GnuParallelLocalAdapter pydantic model

914eb0bd44

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: add new enums for queue_context

564f13fcac

2026-03-31 11:37:03 +02:00

Synchon Mandal

fix: remove datadir from datagrabber meta when hashing for storage

3f2fe45329

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: use pydantic model dump for UpdateMetaMixin

f11cec00aa

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: update type for HDF5FeatureStorage.store_matrix

265ff9ec31

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: update types for juseless datagrabbers

8624398bab

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: move MatrixKind and fix tests for storage.utils

afd2e77d60

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: improve tests for SQLiteFeatureStorage

8c1d299605

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: update tests for testing datagrabbers

183b3439fd

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: adapt testing datagrabbers

bfa9c28740

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: adapt validate_component for DefaultDataReader test

228495b0fe

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: adapt validate_input for BaseFeatureStorage test

65667a6284

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: adapt juseless datagrabbers

cd5138a689

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: improve type annotation and docstring for PatternValidationMixin and test

aa9789ee1d

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: improve data type registration test

1d92214bee

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: improve tests for PatternValidationMixin

76cf3066d7

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: remove redundant tests in PatternValidationMixin

b5b43eab7f

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: adapt maps_datagrabber fixture

030dbbe739

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: lint

376a729059

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: reorder import for pipeline

26bb1820db

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: fix test for TemporalSNRBase

4ea7e90130

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: improve docstrings for PatternValidationMixin

0b69d8fcf7

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: allow DataType enum to be extended

52610e0054

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: fix tests for datagrabber

ae6ff5f8b4

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: improve type handling for BaseDataGrabber.get_types

94c9adf132

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: add aenum as dependency and use it for DataType

6b3b4418e2

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: update tests for PipelineStepMixin

6fd8801e33

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: fix tests for storage

8820ad2499

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: fix tests for onthefly

30c4749df7

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: fix tests for markers

6ed3620646

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: fix tests for preprocess

141ec5dad8

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: make onthefly lazy during import

9600edbd03

2026-03-31 11:37:03 +02:00

Synchon Mandal

fix: make on param for *Aggregation markers None by default

3965f33294

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: reorder marker params validation in BaseMarker

bf737628aa

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: improve docstrings

c5a5645948

2026-03-31 11:37:03 +02:00

Synchon Mandal

update: rename BaseFeatureStroage.validate to validate_input to make intent clear

3d7d1e6461

2026-03-31 11:37:03 +02:00

Synchon Mandal

chore: remove BaseFeatureStorage.get_valid_inputs

eb64225228

2026-03-31 11:37:03 +02:00

Synchon Mandal

refactor: rename PipelineStepMixin validate to validate_component to avoid pydantic conflict

4d03ecfbf3

2026-03-31 11:37:02 +02:00

Synchon Mandal

refactor: make datagrabber interface and impls pydantic models

2a3087e037

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce DMCCSession, DMCCTask, DMCCPhaseEncoding and DMCCRun

28e4d7c06e

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce HCP1200Task and HCP1200PhaseEncoding

39d4940be6

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce AOMICSpace and AOMICTask

5d4793b248

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: improve conditional deps declaration for markers

591ad626f6

2026-03-31 11:37:02 +02:00

Synchon Mandal

refactor: make pipeline.utils.check_ext_dependencies validate via pydantic

5fadfb48ee

2026-03-31 11:37:02 +02:00

Synchon Mandal

chore: improve types

a9320a97f5

2026-03-31 11:37:02 +02:00

Synchon Mandal

refactor: make datareader pydantic model

8467634246

2026-03-31 11:37:02 +02:00

Synchon Mandal

refactor: make marker interface and impls pydantic models

6044b870c7

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: adapt necessary enums in markers

b2038c768a

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: adapt ExtDep for remaining markers

478532264e

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce and adapt ALFFImpl

4ce2a1cabd

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce and adapt ReHoImpl

c7f52304ef

2026-03-31 11:37:02 +02:00

Synchon Mandal

chore: add package guard for fMRIPrepConfoundRemover

ff34df424a

2026-03-31 11:37:02 +02:00

Synchon Mandal

chore: improve docstring for BasePreprocessor

ef09e6df30

2026-03-31 11:37:02 +02:00

Synchon Mandal

refactor: make preprocess interface and impls pydantic models

0808abece1

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: adapt necessary enums in preprocess

b6ee2e755b

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce and adapt SpaceWarpingImpl enum

cde9b71bd6

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce and adapt SmoothingImpl enum

89acbd66cd

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce Confounds and Strategy types

ea1b85f150

2026-03-31 11:37:02 +02:00

Synchon Mandal

chore: improve docstrings in storage

3fcbdb2e85

2026-03-31 11:37:02 +02:00

Synchon Mandal

refactor: make storage interface and impls pydantic models

ab03d6be97

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: adapt necessary enums in storage

6213c062eb

2026-03-31 11:37:02 +02:00

Synchon Mandal

chore: reorder storage imports

36632cc0b5

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: adapt Upsert enum

df8d5b9162

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce Upsert enum

3491fa96fa

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: adapt MatrixKind

57d09999b6

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce MatrixKind enum

1a214e30c9

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce ConfoundsFormat enum

7ff45cff2b

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: adapt DataType and StorageType for remaining markers

42af955ad3

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: improve typing annotation for MarkerInOutMappings

d4081c842e

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: adapt ExtDep for markers

63e88ec02b

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: adapt ExtDep for preprocessors

8095c09261

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce ExtDep enum

1eaa1b803d

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: adapt DataType and StorageType for markers

f9ec93443c

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce StorageType enum

fd1e40589a

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: introduce DataType enum

2cafd6edaa

2026-03-31 11:37:02 +02:00

Synchon Mandal

update: add pydantic to deps

724967ed0d

2026-03-31 11:37:02 +02:00

[ENH]: Adopt Pydantic for schema validation #364

2026-05-26

2026-05-19

2026-03-31