[ENH]: Refactor DataGrabber patterns #341

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synchon merged 17 commits from refactor/dg-patterns into main 2024-05-14 14:47:13 +00:00

Conversation 5 Commits 17 Files changed 30 +787 -670

2024-05-14

Synchon Mandal

chore: unsafe fix for ruff

08a3025f7d

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2024-05-14 15:54:26 +02:00

Synchon Mandal

chore: remove trailing whitespace in api.functions

a0fc510890

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2024-05-14 15:52:47 +02:00

Synchon Mandal

chore: remove test check in test_masks.py

2ad3297ffe

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2024-05-14 15:52:47 +02:00

Synchon Mandal

chore: add changelog 341.enh

16725f113a

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2024-05-14 15:15:50 +02:00

Synchon Mandal

docs: update doc for refactor datagrabber patterns

10f55299d6

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2024-05-14 15:15:50 +02:00

Synchon Mandal

update: adapt fMRIPrepConfoundRemover tests to nested data type refactor

93854fee72

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2024-05-14 15:15:50 +02:00

Synchon Mandal

refactor: adapt fMRIPrepConfoundRemover to access confound file from nested data type

18c1d45011

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2024-05-14 15:15:50 +02:00

Synchon Mandal

chore: update BasePreprocessor docstring

8bca47b89c

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2024-05-14 15:15:50 +02:00

Synchon Mandal

update: adapt get_mask() tests to nested data type refactor

019ce5aba8

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2024-05-14 15:15:50 +02:00

Synchon Mandal

update: make existing datagrabbers adapt the nested data type refactor

d7d406c9ff

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2024-05-14 15:15:50 +02:00

Synchon Mandal

refactor: adapt get_mask() to access mask from nested type when inherit is used

535c66c82c

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2024-05-14 15:15:50 +02:00

Synchon Mandal

refactor: adapt DefaultDataReader to read files for nested data types

af0bbdacb2

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2024-05-14 15:15:50 +02:00

Synchon Mandal

update: adapt datagrabber.utils tests to nested data types

c9f861a371

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2024-05-14 15:15:50 +02:00

Synchon Mandal

chore: update docstring for PatternDataladDataGrabber

cf51fac8ab

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2024-05-14 15:15:50 +02:00

Synchon Mandal

refactor: adapt DataladDataGrabber to fetch files for nested data types

2bcb264031

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2024-05-14 15:15:50 +02:00

Synchon Mandal

refactor: adapt PatternDataGrabber to have faux data types as nested data types for the ...

original data type

8d48438e3a

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2024-05-14 15:15:50 +02:00

Synchon Mandal

refactor: adapt datagrabber patterns to not have faux data types like *_mask and BOLD_confounds

cbd4835e69

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2024-05-14 15:15:50 +02:00