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Code Issues 14 Pull requests 2 Packages Activity Actions

[BUG]: Extra dimension added to mask after warping via ANTs #340

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synchon merged 2 commits from fix/mask-warp-incorrect-ndim into main 2024-05-07 08:30:47 +00:00
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2 changed files with 2 additions and 1 deletions
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1
docs/changes/newsfragments/340.bugfix Normal file
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@ -0,0 +1 @@
Remove extra dimension from masks warped via ANTs by `Synchon Mandal`_

2
junifer/markers/parcel_aggregation.py
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@ -208,7 +208,7 @@ class ParcelAggregation(BaseMarker):
) )
# Get "logical and" version of parcellation and mask # Get "logical and" version of parcellation and mask
parcellation_bin = math_img( parcellation_bin = math_img(
"np.logical_and(img, mask)", "np.logical_and(img, np.squeeze(mask))",
img=parcellation_bin, img=parcellation_bin,
mask=mask_img, mask=mask_img,
) )