[CI]: Improve CI #318

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synchon merged 15 commits from chore/fix-ci into main 2024-06-21 08:59:42 +00:00

Conversation 3 Commits 15 Files changed 10 +41 -24

synchon commented 2024-06-18 14:41:29 +00:00 (Migrated from github.com)

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The CI is acting up due to AFNI tests failing (ReHo and (f)ALFF) and FSL not being installed correctly. Although the latter is being avoided now, the former is not and thus coverage is not being reported. We need to come up with a flexible solution to handle situations like this.

The CI is acting up due to AFNI tests failing (ReHo and (f)ALFF) and FSL not being installed correctly. Although the latter is being avoided now, the former is not and thus coverage is not being reported. We need to come up with a flexible solution to handle situations like this.

github-actions[bot] commented 2024-06-18 15:02:09 +00:00 (Migrated from github.com)

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PR Preview Action v1.4.7
Preview removed because the pull request was closed.
2024-06-21 09:17 UTC

[PR Preview Action](https://github.com/rossjrw/pr-preview-action) v1.4.7 :---: Preview removed because the pull request was closed. 2024-06-21 09:17 UTC <!-- Sticky Pull Request Commentpr-preview -->

codecov[bot] commented 2024-06-18 16:18:38 +00:00 (Migrated from github.com)

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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 86.64%. Comparing base (b890e54) to head (8d0956c).

Additional details and impacted files

@@             Coverage Diff              @@
##              main     #318       +/-   ##
============================================
- Coverage   100.00%   86.64%   -13.36%     
============================================
  Files            1      114      +113     
  Lines            1     5137     +5136     
  Branches         0      999      +999     
============================================
+ Hits             1     4451     +4450     
- Misses           0      528      +528     
- Partials         0      158      +158     

Flag	Coverage Δ
docs	100.00% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Files	Coverage Δ
junifer/markers/brainprint.py	40.94% <100.00%> (ø)
junifer/markers/falff/_afni_falff.py	37.83% <ø> (ø)
junifer/markers/reho/_afni_reho.py	35.89% <ø> (ø)
junifer/pipeline/pipeline_step_mixin.py	97.72% <100.00%> (ø)
junifer/preprocess/smoothing/_afni_smoothing.py	39.13% <ø> (ø)
junifer/utils/logging.py	72.00% <100.00%> (ø)

... and 107 files with indirect coverage changes

## [Codecov](https://app.codecov.io/gh/juaml/junifer/pull/318?dropdown=coverage&src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) Report All modified and coverable lines are covered by tests :white_check_mark: > Project coverage is 86.64%. Comparing base [(`b890e54`)](https://app.codecov.io/gh/juaml/junifer/commit/b890e5451798451c4d6ee7afac01fb0206773a3a?dropdown=coverage&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) to head [(`8d0956c`)](https://app.codecov.io/gh/juaml/junifer/commit/8d0956c13fbb620ab73ac617f7e575c1ad9960a9?dropdown=coverage&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml). <details><summary>Additional details and impacted files</summary> [](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) ```diff @@ Coverage Diff @@ ## main #318 +/- ## ============================================ - Coverage 100.00% 86.64% -13.36% ============================================ Files 1 114 +113 Lines 1 5137 +5136 Branches 0 999 +999 ============================================ + Hits 1 4451 +4450 - Misses 0 528 +528 - Partials 0 158 +158 ``` | [Flag](https://app.codecov.io/gh/juaml/junifer/pull/318/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Coverage Δ | | |---|---|---| | [docs](https://app.codecov.io/gh/juaml/junifer/pull/318/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | `100.00% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files](https://app.codecov.io/gh/juaml/junifer/pull/318?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Coverage Δ | | |---|---|---| | [junifer/markers/brainprint.py](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&filepath=junifer%2Fmarkers%2Fbrainprint.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9tYXJrZXJzL2JyYWlucHJpbnQucHk=) | `40.94% <100.00%> (ø)` | | | [junifer/markers/falff/\_afni\_falff.py](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&filepath=junifer%2Fmarkers%2Ffalff%2F_afni_falff.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9tYXJrZXJzL2ZhbGZmL19hZm5pX2ZhbGZmLnB5) | `37.83% <ø> (ø)` | | | [junifer/markers/reho/\_afni\_reho.py](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&filepath=junifer%2Fmarkers%2Freho%2F_afni_reho.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9tYXJrZXJzL3JlaG8vX2FmbmlfcmVoby5weQ==) | `35.89% <ø> (ø)` | | | [junifer/pipeline/pipeline\_step\_mixin.py](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&filepath=junifer%2Fpipeline%2Fpipeline_step_mixin.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9waXBlbGluZS9waXBlbGluZV9zdGVwX21peGluLnB5) | `97.72% <100.00%> (ø)` | | | [junifer/preprocess/smoothing/\_afni\_smoothing.py](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&filepath=junifer%2Fpreprocess%2Fsmoothing%2F_afni_smoothing.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9wcmVwcm9jZXNzL3Ntb290aGluZy9fYWZuaV9zbW9vdGhpbmcucHk=) | `39.13% <ø> (ø)` | | | [junifer/utils/logging.py](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&filepath=junifer%2Futils%2Flogging.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci91dGlscy9sb2dnaW5nLnB5) | `72.00% <100.00%> (ø)` | | ... and [107 files with indirect coverage changes](https://app.codecov.io/gh/juaml/junifer/pull/318/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) </details>

fraimondo (Migrated from github.com) approved these changes 2024-06-20 15:12:43 +00:00

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