[ENH]: Add support for on-the-fly template space transformation #299

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synchon merged 47 commits from feat/multi-mni-support into main 2024-04-03 16:02:20 +00:00

Conversation 11 Commits 47 Files changed 34 +2052 -1485

2024-04-02

Synchon Mandal

chore: update test_ALFFParcels_comparison in test_falff_parcels.py

78d63d677a

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: rename whole to brain for get_template() and compute_brain_mask()

5723247e94

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: rename whole to brain for get_template() and compute_brain_mask()

e07305fcbb

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2024-04-02 10:04:14 +02:00

Synchon Mandal

fix: correct file for queue test

bbd6e4a4c6

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2024-04-02 10:04:14 +02:00

Synchon Mandal

fix: update tests of api.tests.test_functions.py

a0782b5113

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2024-04-02 10:04:14 +02:00

Synchon Mandal

chore: improve docstring for register_coordinates()

7518411e23

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2024-04-02 10:04:14 +02:00

Synchon Mandal

chore: improve docstring for register_mask()

1692454870

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2024-04-02 10:04:14 +02:00

Synchon Mandal

chore: improve docstring for register_parcellation()

b667c80ea2

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2024-04-02 10:04:14 +02:00

Synchon Mandal

chore: add changelog 299.{enh,change}

cca884aeeb

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2024-04-02 10:04:14 +02:00

Synchon Mandal

chore: deprecate fetch_icbm152_brain_gm_mask()

65219c709b

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: rewrite compute_brain_mask() to allow variable template fetching via templateflow

55eb12db2f

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: add template_type parameter to get_template()

127b6a5206

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2024-04-02 10:04:14 +02:00

Synchon Mandal

chore: fix ReHo comparison test to a different Pearson's r tolerance

39e0eec9ba

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_functions.py

e9601f56bd

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_parcel_aggregation.py

7b1241d363

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_sphere_aggregation.py

efe53eae26

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_ets_rss.py

9d68b444bd

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_collection.py

27ce405488

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_temporal_snr_spheres.py

678b38901b

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_temporal_snr_parcels.py

031d202676

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_reho_parcels.py

b18b5daae6

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_functional_connectivity_spheres.py

02237def5b

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_functional_connectivity_parcels.py

959ab616d1

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_edge_functional_connectivity_spheres.py

b39eb0db30

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_edge_functional_connectivity_parcels.py

3960fb8fc6

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_crossparcellation_functional_connectivity.py

250b95a657

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_falff_spheres.py

771b406d01

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_falff_parcels.py

5130ef59da

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_parcellations.py

6f47e4b5c8

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_masks.py

bdbca3a68e

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: improve tests for test_functions.py

d95658323a

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2024-04-02 10:04:14 +02:00

Synchon Mandal

fix: update tests in test_cli.py

8b7a135873

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: add yaml for no space conversion example and test data

3ed2315b70

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2024-04-02 10:04:14 +02:00

Synchon Mandal

chore: add ANTs installation in docs-preview.yml

a1d5327c5d

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2024-04-02 10:04:14 +02:00

Synchon Mandal

Revert "update: run jobs in docs-preview.yml inside ANTs container" ...

This reverts commit e0b7e3aac76f25eba26cfcc120e83ca611383b12.

7e14371bd2

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: run jobs in docs-preview.yml inside ANTs container

55bf8a2a81

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2024-04-02 10:04:14 +02:00

Synchon Mandal

chore: add changelog 299.feature

9e2215624d

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2024-04-02 10:04:14 +02:00

Synchon Mandal

fix: correct cmd for warping in get_mask

f32669d2ad

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2024-04-02 10:04:14 +02:00

Synchon Mandal

fix: resample after warping in get_parcellation and correct cmd for warping

3fbdaaf450

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2024-04-02 10:04:14 +02:00

Synchon Mandal

chore: improve path handling when running external command for get_mask and get_parcellation

2c7f4fedf1

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: store resampled + warped individual masks in element scoped tempfile

b718e358db

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: store resampled + warped individual parcellations in element scoped tempfile

08ecafe2cb

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2024-04-02 10:04:14 +02:00

Synchon Mandal

feat: add support for mask space transformation in get_mask()

8631c72024

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2024-04-02 10:04:14 +02:00

Synchon Mandal

chore: improve commentary for get_parcellation()

b5aa0d0c28

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2024-04-02 10:04:14 +02:00

Synchon Mandal

fix: remove same space check before merging in get_parcellation()

c3dfb08fb8

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2024-04-02 10:04:14 +02:00

Synchon Mandal

feat: add support for parcellation space transformation in get_parcellation()

8e2b9339a6

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2024-04-02 10:04:14 +02:00

Synchon Mandal

update: add source space info to Warp data for datagrabbers

963e7927b0

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2024-04-02 10:04:14 +02:00