[ENH]: Introduce _AntsApplyTransformsWarper #293

Merged

synchon merged 23 commits from update/add-ants-warping into main 2024-01-15 09:04:34 +00:00

Conversation 6 Commits 23 Files changed 15 +882 -157

2024-01-15

Synchon Mandal

chore: add changelogs 293.{enh,feature,misc}

150871a339

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2024-01-15 14:15:59 +05:30

Synchon Mandal

update: complete tests for BOLDWarper

239956cc59

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2024-01-15 14:15:59 +05:30

Synchon Mandal

update: complete tests for ApplyWarper

0dfa55bd53

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2024-01-15 14:15:59 +05:30

Synchon Mandal

chore: correct order of decorators in AntsApplyTransformsWarper tests

592423c402

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2024-01-15 14:15:59 +05:30

Synchon Mandal

update: complete tests for AntsApplyTransformsWarper

ea7a708bc3

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2024-01-15 14:15:59 +05:30

Synchon Mandal

fix: correct path for resampled reference in AntsApplyTransformsWarper

75fda63782

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2024-01-15 14:15:59 +05:30

Synchon Mandal

refactor: cleanup saving and loading for ANTs coords transform in get_coordinates

45a0b6e6df

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2024-01-15 14:15:59 +05:30

Synchon Mandal

fix: remove header after coords transformation for ANTs in get_coordinates

b0698704c8

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2024-01-15 14:15:59 +05:30

Synchon Mandal

refactor: different file saving and loading strategy for ANTs and FSL in get_coordinates

972538a380

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2024-01-15 14:15:59 +05:30

Synchon Mandal

update: add support for coords transformation via ANTs

1beffd74af

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2024-01-15 14:15:59 +05:30

Synchon Mandal

update: add support for mask warping via ANTs

e77c06701d

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2024-01-15 14:15:59 +05:30

Synchon Mandal

update: use GenericLabel[NearestNeighbor] for interpolation in parcellation warp via ANTs

a8cbeed511

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2024-01-15 14:15:59 +05:30

Synchon Mandal

update: add support for parcellation warping via ANTs

2e98ff0602

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2024-01-15 14:15:59 +05:30

Synchon Mandal

update: make incorrect warp file in BOLDWarper as RuntimeError

d3f6f3f5b8

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2024-01-15 14:15:59 +05:30

Synchon Mandal

fix: add missing input data path in _AntsApplyTransformsWarper

64a3c08024

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2024-01-15 14:15:59 +05:30

Synchon Mandal

fix: use suffix instead of suffix() in BOLDWarper

026886d1f2

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2024-01-15 14:15:59 +05:30

Synchon Mandal

chore: add flirt to required commands for _ApplyWarper

dc131e463c

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2024-01-15 14:15:59 +05:30

Synchon Mandal

chore: add commentary to BOLDWarper test

cf1f6fe00e

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2024-01-15 14:15:59 +05:30

Synchon Mandal

update: adapt BOLDWarper to support both FSL and ANTs

65e47aa926

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2024-01-15 14:15:59 +05:30

Synchon Mandal

update: add tests for _AntsApplyTransformsWarper

c2c88b8736

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2024-01-15 14:15:59 +05:30

Synchon Mandal

update: introduce _AntsApplyTransformsWarper for warping BOLD via ANTs

b7f8bebc1f

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2024-01-15 14:15:59 +05:30

Synchon Mandal

chore: add junifer.preprocess.ants sub-package

0c9252cd4a

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2024-01-15 14:15:59 +05:30

Synchon Mandal

update: add wrapper for ResampleImage

3b20653be5

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