[ENH]: Homotopic Version of Schaefer Parcellation #225

Merged

synchon merged 4 commits from feat/homotopic-schaefer-parcellation into main

2023-07-07 13:22:05 +00:00

synchon commented

2023-07-07 12:20:24 +00:00

(Migrated from github.com)

Are you requiring a new dataset or marker?

I understand this is not a marker or dataset request

Which feature do you want to include?

There is now a homotopic version of the Schaefer Atlas (https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Yan2023_homotopic) which is going to be useful for many research questions especially targeted at lateralisation in the brain. The linked repo's readme also links to the corresponding publication.

How do you imagine this integrated in junifer?

As another in-built parcellation.

Do you have a sample code that implements this outside of junifer?

No response

Anything else to say?

No response

### Are you requiring a new dataset or marker? - [X] I understand this is not a marker or dataset request ### Which feature do you want to include? There is now a homotopic version of the Schaefer Atlas (https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Yan2023_homotopic) which is going to be useful for many research questions especially targeted at lateralisation in the brain. The linked repo's readme also links to the corresponding publication. ### How do you imagine this integrated in junifer? As another in-built parcellation. ### Do you have a sample code that implements this outside of junifer? _No response_ ### Anything else to say? _No response_

LeSasse (Migrated from github.com) reviewed

2023-07-07 12:20:24 +00:00

codecov[bot] commented

2023-07-07 12:20:59 +00:00

(Migrated from github.com)

Codecov Report

Merging #225 (21890b1) into main (c469049) will decrease coverage by 0.08%.
The diff coverage is 88.88%.

@@            Coverage Diff             @@
##             main     #225      +/-   ##
==========================================
- Coverage   93.27%   93.20%   -0.08%     
==========================================
  Files          84       84              
  Lines        3629     3692      +63     
  Branches      695      709      +14     
==========================================
+ Hits         3385     3441      +56     
- Misses        155      159       +4     
- Partials       89       92       +3

Flag	Coverage Δ
docs	`100.00% <ø> (ø)`
junifer	`93.19% <88.88%> (-0.08%)`	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
junifer/data/parcellations.py	`92.44% <88.88%> (-0.68%)`	⬇️

## [Codecov](https://app.codecov.io/gh/juaml/junifer/pull/225?src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) Report > Merging [#225](https://app.codecov.io/gh/juaml/junifer/pull/225?src=pr&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) (21890b1) into [main](https://app.codecov.io/gh/juaml/junifer/commit/c469049349e9273fa5704da801ab0dd075a4799c?el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) (c469049) will **decrease** coverage by `0.08%`. > The diff coverage is `88.88%`. [![Impacted file tree graph](https://app.codecov.io/gh/juaml/junifer/pull/225/graphs/tree.svg?width=650&height=150&src=pr&token=5H21JuZXMw&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml)](https://app.codecov.io/gh/juaml/junifer/pull/225?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) ```diff @@ Coverage Diff @@ ## main #225 +/- ## ========================================== - Coverage 93.27% 93.20% -0.08% ========================================== Files 84 84 Lines 3629 3692 +63 Branches 695 709 +14 ========================================== + Hits 3385 3441 +56 - Misses 155 159 +4 - Partials 89 92 +3 ``` | Flag | Coverage Δ | | |---|---|---| | docs | `100.00% <ø> (ø)` | | | junifer | `93.19% <88.88%> (-0.08%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://app.codecov.io/gh/juaml/junifer/pull/225?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Coverage Δ | | |---|---|---| | [junifer/data/parcellations.py](https://app.codecov.io/gh/juaml/junifer/pull/225?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9kYXRhL3BhcmNlbGxhdGlvbnMucHk=) | `92.44% <88.88%> (-0.68%)` | :arrow_down: |

fraimondo (Migrated from github.com) approved these changes

2023-07-07 12:51:43 +00:00