junifer

Fede

fix this one

6f7e8e46e7

2022-11-04 23:44:55 +02:00

Fede Raimondo

Merge branch 'main' into docs_extending

7e421bcf0f

2022-11-04 22:22:16 +01:00

Synchon Mandal

docs: reorganize and run black on conf.py

69419e8199

2022-11-04 14:28:34 +02:00

Synchon Mandal

docs: disable sqlalchemy mapping

9fd7bfcd80

2022-11-04 14:28:34 +02:00

Fede

@synchon: comments addressed

e7bd2ab2a9

2022-11-04 14:28:34 +02:00

Fede

more lint

321c7cc2a8

2022-11-04 14:28:34 +02:00

Fede

lint

109b2142f0

2022-11-04 14:28:34 +02:00

Fede

Test nilearn vs fmriprep

62fb4998d4

2022-11-04 14:28:34 +02:00

Fede

Update doc

e1e9099b62

2022-11-04 14:28:34 +02:00

Fede

Fix linting

a977ab690f

2022-11-04 14:28:34 +02:00

Fede

more docs

f5725e9a53

2022-11-04 14:28:34 +02:00

Fede

more comments

67556a0031

2022-11-04 14:28:34 +02:00

Fede

done with review

c32935374a

2022-11-04 14:28:34 +02:00

Fede

Addressing review + decorator

3fc9287d0c

2022-11-04 14:28:34 +02:00

Fede

Fix bug

e8b8abc1f8

2022-11-04 14:28:34 +02:00

Fede

Test for derivative only

db026a3f62

2022-11-04 14:28:34 +02:00

Fede

test modify only what is expected

c7a3cc3ed4

2022-11-04 14:28:34 +02:00

Fede

One more

796778123e

2022-11-04 14:28:34 +02:00

Fede

One more test

42f25c2c3f

2022-11-04 14:28:34 +02:00

Fede

damn test

00172fee4f

2022-11-04 14:28:34 +02:00

Fede

Code ready, needs DOC

4a833e27de

2022-11-04 14:28:34 +02:00

Fede

codespell

a15f8fc9ce

2022-11-04 14:28:34 +02:00

Fede

Still WIP, but with more tests

da95bdaab6

2022-11-04 14:28:34 +02:00

Fede

Confound removal WIP

ea6976eee5

2022-11-04 14:28:34 +02:00

Synchon Mandal

fix: current unix timestamp in milliseconds for ci-docs.yml

825365f319

2022-11-04 14:28:34 +02:00

Synchon Mandal

chore: standardize sphinx section header ordering for docs/installation

9f2836f4da

2022-11-04 14:28:34 +02:00

Synchon Mandal

chore: standardize sphinx section header ordering for docs/maintaining

dadc4c910e

2022-11-04 14:28:34 +02:00

Synchon Mandal

chore: standardize sphinx section header ordering for docs/faq

22ccde1f82

2022-11-04 14:28:34 +02:00

Synchon Mandal

chore: remove extra line in docs/contribution

01ec5cb274

2022-11-04 14:28:34 +02:00

Synchon Mandal

chore: standardize sphinx section header ordering for docs/builtin

a0d542b138

2022-11-04 14:28:34 +02:00

Synchon Mandal

chore: standardize sphinx section header ordering for docs/understanding

7a2922f4dd

2022-11-04 14:28:34 +02:00

Synchon Mandal

chore: standardize sphinx section header ordering in docs/api

654b80a0e2

2022-11-04 14:28:34 +02:00

Fede

Fix latest.inc

553be9bea2

2022-11-04 14:28:34 +02:00

Fede

Changes requested

7822cbbef4

2022-11-04 14:28:34 +02:00

Fede

cleanup + fix tables + fix search index

c56a39ffd6

2022-11-04 14:28:34 +02:00

Fede

Remove rtd theme extension

ee2ee43d7e

2022-11-04 14:28:34 +02:00

Fede

another typo

671a4f6d12

2022-11-04 14:28:34 +02:00

Fede

typo

a87cbbf837

2022-11-04 14:28:34 +02:00

Fede

Revert back this change

8b23a2120a

2022-11-04 14:28:33 +02:00

Fede

Fix comments + furo template

61577d30c2

2022-11-04 14:28:33 +02:00

Fede

Remove :external:

0c5f96eebe

2022-11-04 14:28:33 +02:00

Fede

Update doc dependencies

609489f785

2022-11-04 14:28:33 +02:00

Fede

more fixes

f23a717247

2022-11-04 14:28:30 +02:00

Fede

Fix stats docs

90b607024b

2022-11-04 14:28:08 +02:00

Fede

Fix CI

a18a1cc243

2022-11-04 14:28:08 +02:00

Fede

Flake

e41b0dbf0c

2022-11-04 14:28:08 +02:00

Fede

fix for many things in the documentation, but mostly references

f407d8ca14

2022-11-04 14:28:08 +02:00

Fede

fix sphinx refs

4c63c15b7a

2022-11-04 14:28:08 +02:00

Synchon Mandal

chore: rename test_parcel.py to test_parcel_aggregation.py

a8918abcdf

2022-11-04 14:28:08 +02:00

Synchon Mandal

docs: update numpy and pandas version constraints in installation.rst

970db8308e

2022-11-04 14:28:08 +02:00

LeSasse

change to list comprehension

eb87039e5a

2022-11-04 14:28:08 +02:00

LeSasse

adding entry to latest

4eb98e10fd

2022-11-04 14:28:08 +02:00

LeSasse

fixing get_elements for aomic piop2 by imposing user-specified constraints; adding some tests

858bcf8343

2022-11-04 14:28:08 +02:00

Fede

BUMP pandas and numpy versions

4b6560e451

2022-11-04 14:28:08 +02:00

Synchon Mandal

fix: add missing quotes in docs.yml and docs-preview.yml

7a2e360442

2022-11-04 14:28:08 +02:00

Synchon Mandal

chore: use actions/setup-python@v4 for pypi.yml

ed53828e20

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: use Python 3.10 for pypi.yml

35d846c189

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: use Python 3.11 for lint.yml

613a00f636

2022-11-04 14:28:08 +02:00

Synchon Mandal

chore: use actions/setup-python@v4 for docs.yml

01ae2364b7

2022-11-04 14:28:08 +02:00

Synchon Mandal

chore: use actions/checkout@v3 for docs.yml

de93572642

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: use Python 3.10 for docs.yml

e04fc7a6f3

2022-11-04 14:28:08 +02:00

Synchon Mandal

chore: use actions/setup-python@v4 for docs-preview.yml

1122c3f8d2

2022-11-04 14:28:08 +02:00

Synchon Mandal

chore: use actions/checkout@v3 for docs-preview.yml

3e9752f668

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: use Python 3.10 for docs-preview.yml

87783caa58

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: support Python 3.11 for ci.yml

57d24f78de

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: support Python 3.11 for ci-docs.yml

4301d3897b

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: support Python 3.11 in tox.ini

e8fb156f69

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: implement skip_file_check property for DataladHCP1200

11da30cb04

2022-11-04 14:28:08 +02:00

Synchon Mandal

fix: correct test for PatternDataGrabber

64ad95f346

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: replace check_file_existence argument with skip_file_check property for PatternDataGrabber

c0a92b5f54

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: remove check_file_existence argument from DataladHCP1200

4255bc5adc

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: add test for DataladHCP1200 incorrect access for phase encodings

aaaf954dd1

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: add test for DataladHCP1200 incorrect access of tasks

3eb427ca91

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: add test for DataladHCP1200 multiple access with single phase encoding

a5d106596b

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: add test for DataladHCP1200 multi access with single task

c48a937908

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: add test for DataladHCP1200 multiple access

f593fbcb46

2022-11-04 14:28:08 +02:00

Synchon Mandal

chore: rename test for DataladHCP1200 single access

f3ec4eedbd

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: add correct iterator test for DataladHCP1200 tests

ef138bdef5

2022-11-04 14:28:08 +02:00

Synchon Mandal

fix: add check_file_existence argument for test_PatternDataGrabber_errors

0e93cc5b58

2022-11-04 14:28:08 +02:00

Synchon Mandal

chore: update latest.inc

d5f3879be7

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: add check_file_existence argument in DataladHCP1200

a5ec5f32d1

2022-11-04 14:28:08 +02:00

Synchon Mandal

chore: docstring fix in PatternDataGrabber

885fa3562c

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: add support for checking file existence in PatternDataGrabber

c4a0bdc50d

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: parametrize test for DataladHCP1200 datagrabber

33abb48b1a

2022-11-04 14:28:08 +02:00

Synchon Mandal

chore: update latest.inc

6a614d01b1

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: add test for DataladHCP1200() datagrabber

aca638cbb4

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: add script for HCP1200 test data generation in Gin

e81d7615d7

2022-11-04 14:28:08 +02:00

Synchon Mandal

chore: update latest.inc

abcf2f5af0

2022-11-04 14:28:08 +02:00

Synchon Mandal

chore: add Felix to contributors.inc

97c6eb3936

2022-11-04 14:28:08 +02:00

Synchon Mandal

fix: correct pattern for JuselessDataladAOMICID1000VBM test

d0a4b1c61d

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: update URI and pattern for JuselessDataladAOMICID1000VBM

e6355457fe

2022-11-04 14:28:08 +02:00

Synchon Mandal

fix: correct imports for aomic_id1000_vbm.py

58360e01a1

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: add juseless test for JuselessDataladAOMICID1000VBM

0857d780c0

2022-11-04 14:28:08 +02:00

Synchon Mandal

refactor: move JuselessDataladAOMICID1000VBM to separate module

fac9437883

2022-11-04 14:28:08 +02:00

Felix Hoffstaedter

fix missing space and uri too long is problematic: copied symlink with short name

0a167245f8

2022-11-04 14:28:08 +02:00

Felix Hoffstaedter

add grabber for local VBM AOMIC 1000 dataset

764fadd2fd

2022-11-04 14:28:08 +02:00

Felix Hoffstaedter

fix missing space and uri too long is problematic: copied symlink with short name

d0c3be4545

2022-11-04 14:28:08 +02:00

Felix Hoffstaedter

add grabber for local VBM AOMIC 1000 dataset

464de2264e

2022-11-04 14:28:08 +02:00

Fede

Increase coverage

64b459715b

2022-11-04 14:28:08 +02:00

Fede

Refactor markers

82c427e947

2022-11-04 14:28:08 +02:00

Fede

trigger codecov

6e55faa87d

2022-11-04 14:28:08 +02:00

Fede

Fix this again

4f379ce930

2022-11-04 14:28:08 +02:00

Fede

fix latest.inc syntax

2eec2a36f9

2022-11-04 14:28:08 +02:00

Fede

Checking another coverage config

949f16a2d1

2022-11-04 14:28:08 +02:00

Fede

Maybe create a file

62d62146c9

2022-11-04 14:28:08 +02:00

Fede

Better mock file

c1133c3ac3

2022-11-04 14:28:08 +02:00

Fede

tabs

019d7adf2f

2022-11-04 14:28:08 +02:00

Fede

Update mock coverage.xml

e73006ea0e

2022-11-04 14:28:08 +02:00

Fede

Missing one parameter

969422d82d

2022-11-04 14:28:08 +02:00

Fede

Another attempt at codecov checks

d03e4caa8f

2022-11-04 14:28:08 +02:00

Synchon Mandal

update: complete type annotations for DefaultDataReader

47221240fb

2022-11-04 14:28:08 +02:00

Synchon Mandal

docs: cleanup conf.py

1749e19858

2022-11-04 14:28:08 +02:00

Synchon Mandal

docs: add content in preprocess.rst

0f3a95648b

2022-11-04 14:28:08 +02:00

Synchon Mandal

docs: add content in storage.rst

8007b737d8

2022-11-04 14:28:08 +02:00

Synchon Mandal

docs: add preprocess link

b23c4411da

2022-11-04 14:28:08 +02:00

Synchon Mandal

docs: add content in marker.rst

9d281c35df

2022-11-04 14:28:05 +02:00

Synchon Mandal

docs: add missing comma in datagrabber.rst

a142e2947f

2022-11-04 14:27:00 +02:00

Synchon Mandal

docs: add content in datareader.rst

0cfb2868dc

2022-11-04 14:27:00 +02:00

Synchon Mandal

docs: improve datagrabber.rst

9e7044bea8

2022-11-04 14:26:58 +02:00

Synchon Mandal

docs: improve understanding/data.rst

a5c11a8ebe

2022-11-04 14:26:26 +02:00

Synchon Mandal

docs: correct article in understanding/index.rst

a03aa67cca

2022-11-04 14:26:26 +02:00

Synchon Mandal

docs: improve installation.rst

a6e05b2e6e

2022-11-04 14:26:26 +02:00

Synchon Mandal

docs: update title of datagrabber.rst and datareader.rst

4dc57f262a

2022-11-04 14:26:26 +02:00

Synchon Mandal

docs: add preprocess.rst

19d4a9aba4

2022-11-04 14:26:26 +02:00

Synchon Mandal

docs: improve data.rst

78dd22b798

2022-11-04 14:26:23 +02:00

Synchon Mandal

docs: add FunctionalConnectivitySpheres to available markers

4d0beef5f2

2022-11-04 14:25:42 +02:00

Synchon Mandal

docs: fix class paths and config for available datagrabbers

92c62d5a4f

2022-11-04 14:25:42 +02:00

Synchon Mandal

docs: correct typo in builtin.rst

4a0a874d31

2022-11-04 14:25:42 +02:00

Synchon Mandal

update: add junifer logo in README and docs index

7ddb4c0ace

2022-11-04 14:25:42 +02:00

Fede

Success if no upload

9a151c1aa0

2022-11-04 14:25:42 +02:00

Fede

Need to pass in all 3 python versions

e12fc9097e

2022-11-04 14:25:42 +02:00

Fede

Run tests only when needed

5af3d290bc

2022-11-04 14:25:42 +02:00

Synchon Mandal

update: add tests for junifer selftest

1d249a5782

2022-11-04 14:25:42 +02:00

Synchon Mandal

update: make junifer selftest take argument for specific sub-package tests

ce2414ece2

2022-11-04 14:25:42 +02:00

Synchon Mandal

feature: add selftest command for junifer

607c0b49f5

2022-11-04 14:25:42 +02:00

Fede

fix the source dir for the preview

a57979a352

2022-11-04 14:25:42 +02:00

Fede

Avoid running tests if only docs changed

3c12717658

2022-11-04 14:25:42 +02:00

Fede

update action title

081d57a16b

2022-11-04 14:25:42 +02:00

[DOC] Section on extending junifer #104

2022-11-04

2022-10-23

2022-10-22