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Code Issues 14 Pull requests 2 Packages Activity Actions

fix: storage #103

Merged
synchon merged 83 commits from fix/storage into main 2022-10-17 16:54:37 +00:00
Conversation 17 Commits 83 Files changed 20 +717 -529

2022-10-17

Synchon Mandal
chore: add comments and docstrings to test_storage_base.py
d4e8990f09
2022-10-17 16:37:06 +02:00
Synchon Mandal
update: adapt SQLiteFeatureStorage to new changes of BaseFeatureStorage
36485a2d57
2022-10-17 16:36:32 +02:00
Synchon Mandal
update: move storage.validate() logic to BaseFeatureStorage
aa1d90b2c7
2022-10-17 16:35:49 +02:00
Synchon Mandal
update: add new argument storage_types for BaseFeatureStorage and adapt its tests
b73889c1bc
2022-10-17 16:34:30 +02:00
Synchon Mandal
update: add tests for storage.store()
9b91c3bc58
2022-10-17 15:39:17 +02:00
Synchon Mandal
update: add case for handling invalid argument values to storage.store()
d7e5e298c5
2022-10-17 15:37:25 +02:00
Synchon Mandal
fix: rename validate_input() to validate() in test_storage_base.py
76dccd7008
2022-10-17 11:34:59 +02:00
Synchon Mandal
fix: correct argument name for storage.validate()
2ff9094ecd
2022-10-17 11:15:25 +02:00
Synchon Mandal
update: revert renaming of validate() to validate_input() in test_storage_base.py
e3905c8418
2022-10-17 11:14:54 +02:00
Synchon Mandal
update: revert renaming of read_df() to read_features() in run_ets_rss_marker.py
4a81a3cdfd
2022-10-17 11:04:26 +02:00
Synchon Mandal
update: revert renaming of read_df() to read_features() in run_junifer_julearn.py
b9d6ebfaf2
2022-10-17 11:04:09 +02:00
Synchon Mandal
update: revert renaming of read_df() to read_features() in test_collection.py
13000c4376
2022-10-17 11:03:44 +02:00
Synchon Mandal
update: revert renaming of read_df() to read_features() in test_storage_base.py
3406ebff6c
2022-10-17 11:03:29 +02:00
Synchon Mandal
update: rename validate_input() to validate() for storage-like objects in collection.py
45fbeb567d
2022-10-17 10:53:47 +02:00
Synchon Mandal
update: make BaseFeaturestorage and SQLiteFeatureStorage validate() raise error
d0b8d902b5
2022-10-17 10:49:14 +02:00

2022-10-14

Synchon Mandal
update: revert renaming of read_df() to read_features() in storage
5942a624aa
2022-10-14 15:11:30 +02:00
Synchon Mandal
update: replace validate_input with validate for MarkerCollection() marker check
ecaa7ff07f
2022-10-14 14:55:54 +02:00
Synchon Mandal
chore: update latest.inc
9dcd8006fd
2022-10-14 12:45:38 +02:00
Synchon Mandal
chore: black formatting
199fe20856
2022-10-14 12:33:14 +02:00
Synchon Mandal
fix: replace read_df() with read_features() in MarkerCollection() tests
da07944148
2022-10-14 12:32:20 +02:00
Synchon Mandal
chore: complete type annotations in MarkerCollection() tests
128eefa6bb
2022-10-14 12:31:53 +02:00
Synchon Mandal
fix: replace validate() with validate_input() in MarkerCollection()
68798cba3c
2022-10-14 12:31:25 +02:00
Synchon Mandal
chore: complete type annotations and improve docstring in MarkerCollection()
5c03332489
2022-10-14 12:30:42 +02:00
Synchon Mandal
fix: make test_storage_base.py work
bccf98d35e
2022-10-14 12:13:13 +02:00
Synchon Mandal
fix: replace read_df() with read_features() and kind with matrix_kind in test_sqlite.py
47665be38e
2022-10-14 12:07:59 +02:00
Synchon Mandal
fix: rewrite tests for BaseMarker
f401f4e070
2022-10-14 11:51:42 +02:00
Synchon Mandal
update: expose FunctionalConnectivitySpheres in __init__.py
3ea41d5be3
2022-10-14 10:57:57 +02:00
Synchon Mandal
chore: improve docstring and code style for FunctionalConnectivitySpheres() tests
18568bcf99
2022-10-14 10:57:22 +02:00
Synchon Mandal
chore: black formatting
2b6787d91c
2022-10-14 10:57:05 +02:00
Synchon Mandal
update: correct storage interface for FunctionalConnectivitySpheres()
8d558a25f6
2022-10-14 10:52:18 +02:00
Synchon Mandal
update: replace kind with matrix_kind for FunctionalConnectivitySpheres() compute output
9a242ce31b
2022-10-14 10:52:13 +02:00
Synchon Mandal
chore: improve type annotations and docstring in FunctionalConnectivitySpheres()
af32dac592
2022-10-14 10:52:07 +02:00
Synchon Mandal
update: improve docstring and code quality in SphereAggregation()
2dfe172029
2022-10-14 10:47:41 +02:00
Synchon Mandal
chore: complete type annotations in FunctionalConnectivityAtlas()
e3173d415a
2022-10-14 10:43:18 +02:00
Synchon Mandal
update: expose FunctionalConnectivityAtlas in __init__.py
1dd35367e7
2022-10-14 10:28:45 +02:00
Synchon Mandal
chore: improve docstring in test_functional_connectivity_atlas.py
5175970254
2022-10-14 10:28:22 +02:00
Synchon Mandal
chore: improve docstring for RSSETSMarker()
cc71a0b72e
2022-10-14 10:28:02 +02:00
Synchon Mandal
chore: improve docstring for SQLiteFeatureStorage()
a168eed809
2022-10-14 10:27:42 +02:00
Synchon Mandal
update: change kind to matrix_kind for store_matrix() in SQLiteFeatureStorage()
43ef5e78e3
2022-10-14 10:27:16 +02:00
Synchon Mandal
update: use updated interface for FunctionalConnectivityAtlas() storage
4a2fc6d922
2022-10-14 10:26:20 +02:00
Synchon Mandal
update: change storage parameter name from kind to matrix_kind to avoid issues
87aea88abf
2022-10-14 10:25:48 +02:00
Synchon Mandal
update: complete type annotations and improve docstring in FunctionalConnectivityAtlas()
08ae7de37b
2022-10-14 10:25:19 +02:00
Synchon Mandal
fix: replace read_df() with read_features() in run_junifer_julearn.py
7316634dce
2022-10-14 09:33:45 +02:00
Synchon Mandal
update: complete storage test for SphereAggregation()
a69f2d29df
2022-10-14 09:33:19 +02:00
Synchon Mandal
update: correct interface for store() in SphereAggregation()
df2bf1e330
2022-10-14 09:33:01 +02:00
Synchon Mandal
update: complete type annotations and improve docstrings in SphereAggregation()
3dc70ec5cc
2022-10-14 09:32:32 +02:00
Synchon Mandal
chore: improve docstring for parcel.py
738805e40f
2022-10-14 08:33:49 +02:00
Synchon Mandal
chore: improve docstring for ets_rss.py
7a50f7d4ca
2022-10-14 08:33:24 +02:00
Synchon Mandal
fix: replace remaining read_df() usage to read_features() in SQLiteFeatureStorage()
9361f87416
2022-10-14 08:29:13 +02:00
Synchon Mandal
fix: docstring fix for proper documentation build
2a4c70258e
2022-10-14 08:28:21 +02:00
Synchon Mandal
update: improve RSSETSMarker example
a9cb9d43b0
2022-10-14 08:28:05 +02:00
Synchon Mandal
update: complete example for RSSETSMarker
7c30393bd9
2022-10-14 07:47:31 +02:00
Synchon Mandal
chore: isort test_ets_rss.py
8bb2f44501
2022-10-14 07:47:06 +02:00
Synchon Mandal
fix: set correct column label for RSSETSMarker compute output
ffe8d35327
2022-10-14 07:46:26 +02:00

2022-10-13

Synchon Mandal
update: improve and complete testing for RSSETSMarker
4aae546f0a
2022-10-13 19:35:11 +02:00
Synchon Mandal
update: improve docstring and type annotations for RSSETSMarker; fix: correct storage interface for RSSETSMarker
5f39da72d0
2022-10-13 19:33:50 +02:00
Synchon Mandal
chore: complete docstring for RSSETSMarker() constructor
13deb5292d
2022-10-13 19:32:33 +02:00
Synchon Mandal
update: complete type annotations and update docstrings for BaseMarker()
0c70e97b6e
2022-10-13 17:21:34 +02:00
Synchon Mandal
update: make BaseMarker() abstract base class
cec8f49efd
2022-10-13 17:21:28 +02:00
Synchon Mandal
chore: black formatting
8ba460a048
2022-10-13 16:59:03 +02:00
Synchon Mandal
chore: spellcheck BaseFeatureStorage()
28c9c5e4aa
2022-10-13 16:58:44 +02:00
Synchon Mandal
update: rename read_df() to read_features()
fba2e4b6dc
2022-10-13 16:58:25 +02:00
Synchon Mandal
feature: implement timeseries storage for SQLiteFeatureStorage()
146855967f
2022-10-13 16:57:29 +02:00
Synchon Mandal
update: replace store_*() methods with store() in ParcelAggregation()
fdea649439
2022-10-13 13:04:09 +02:00
Synchon Mandal
chore: complete type annotations and improve code style in ParcelAggregation()
844e8dc1d5
2022-10-13 13:03:25 +02:00
Synchon Mandal
chore: fix docstring for get_output_kind() in ParcelAggregation()
65e5545294
2022-10-13 13:01:15 +02:00
Synchon Mandal
chore: complete type annotations and docstring for ParcelAggregation() constructor
980504eccb
2022-10-13 13:01:15 +02:00
Synchon Mandal
update: adjust signatures and docstrings for store_*() methods in BaseFeatureStorage()
bf48c56d4b
2022-10-13 12:57:13 +02:00

2022-10-12

Synchon Mandal
update: complete type annotation and implement store_timeseries() in SQLiteFeatureStorage()
31d9cd334c
2022-10-12 20:36:26 +02:00
Synchon Mandal
fix: use _store_2d() in SQLiteFeatureStorage()
6d702a114c
2022-10-12 20:35:54 +02:00
Synchon Mandal
update: complete type annotation and rename _store_2d() in SQLiteFeatureStorage()
f6951b3a43
2022-10-12 20:35:20 +02:00
Synchon Mandal
chore: reorder store_df() in SQLiteFeatureStorage()
ceadd268b1
2022-10-12 20:34:45 +02:00
Synchon Mandal
update: complete type annotation for store_table() in SQLiteFeatureStorage()
fd5eae4dfa
2022-10-12 20:33:32 +02:00
Synchon Mandal
update: complete type annotation and rename store_matrix() in SQLiteFeatureStorage()
8055d63d86
2022-10-12 20:32:19 +02:00
Synchon Mandal
chore: improve docstring in SQLiteFeatureStorage()
b783d8e294
2022-10-12 20:30:57 +02:00
Synchon Mandal
update: rename validate() to validate_input() in SQLiteFeatureStorage()
fdaf93d8e3
2022-10-12 20:28:11 +02:00
Synchon Mandal
update: add store() in BaseFeatureStorage()
f291b9eae2
2022-10-12 20:27:15 +02:00
Synchon Mandal
update: remove @abstractmethod and reorder store_df() in BaseFeatureStorage()
b0d1ec7c77
2022-10-12 20:26:35 +02:00
Synchon Mandal
update: complete type annotation and remove @abstractmethod in store_timeseries() in BaseFeatureStorage()
83470adf32
2022-10-12 20:25:38 +02:00
Synchon Mandal
update: complete type annotation and remove @abstractmethod for store_table() in BaseFeatureStorage()
7bf94397a0
2022-10-12 20:24:58 +02:00
Synchon Mandal
update: rename, complete type annotation and remove @abstractmethod for store_matrix() in BaseFeatureStorage()
d2cbe8a096
2022-10-12 20:23:40 +02:00
Synchon Mandal
chore: improve docstring for store_metadata() in BaseFeatureStorage()
8ce79eac3b
2022-10-12 20:22:36 +02:00
Synchon Mandal
update: change validate() to validate_input() in BaseFeatureStorage() and improve docstring
4eb808602b
2022-10-12 20:21:43 +02:00