WIP: Test: add artifacts #21
2 changed files with 27 additions and 16 deletions
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@ -152,3 +152,7 @@ test_script:
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touch $HOME/build.lock;
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while [ -e $HOME/build.lock ]; do sleep 5; done;
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fi;
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# artifacts:
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# - path: /data/archive/study_1/catalog
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# name: TestCatalog
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@ -154,25 +154,32 @@ def test_pipeline(tmp_path: Path,
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with open(metadata_path) as f:
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json.load(f)
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# 2. Test dataset generation
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# - Try to clone the datasets and fetch the dicom tarfile
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for study in test_study_names:
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for visit in existing_visits:
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dataset = clone_visit(
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tmp_path / f'ds_{study}_{visit}',
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data_webserver,
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study,
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visit,
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dataaccess_credential,
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credman,
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)
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# Try to get the tar file and the DICOMs
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dataset.get(f'icf/{visit}_dicom.tar')
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dataset.get(f'{study}_{visit}')
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# # 2. Test dataset generation
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# # - Try to clone the datasets and fetch the dicom tarfile
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# for study in test_study_names:
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# for visit in existing_visits:
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# dataset = clone_visit(
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# tmp_path / f'ds_{study}_{visit}',
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# data_webserver,
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# study,
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# visit,
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# dataaccess_credential,
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# credman,
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# )
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# # Try to get the tar file and the DICOMs
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# dataset.get(f'icf/{visit}_dicom.tar')
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# dataset.get(f'{study}_{visit}')
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# 3. Test catalog generation
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# - assert that study catalogs have been created using webcatalog method
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for study in test_study_names:
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for i, study in enumerate(test_study_names):
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catalog_path = Path(test_studies_dir) / study / 'catalog'
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ctlg = WebCatalog(location=str(catalog_path))
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assert ctlg.is_created()
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if i==0:
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runner = WitlessRunner(cwd=test_studies_dir, env=dict(os.environ))
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runner.run(
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(['sudo', '-E', '--preserve-env=PATH'] if on_appveyor else []) + [
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f'appveyor PushArtifact {catalog_path.resolve()}'
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]
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)
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