79 lines
No EOL
3 KiB
Markdown
79 lines
No EOL
3 KiB
Markdown
# Output
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JALE will create two new folders in your project folder:
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## Results folder
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This folder will contain all relevant resulting files from your ALE analyses
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```
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<base_path>/
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├── Results/
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│ ├── MainEffect/
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│ │ ├── Volumes/
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│ │ ├── Contribution/
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│ │ ├── NullDistributions/
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│ │ └── Figures/
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│ ├── Probabilistic/
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│ │ ├── Volumes/
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│ │ ├── NullDistributions/
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│ │ └── Figures/
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│ ├── Contrast/
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│ │ ├── Volumes/
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│ │ ├── NullDistributions/
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│ │ └── Figures/
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│ ├── BalancedContrast/
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│ │ ├── Volumes/
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│ │ ├── NullDistributions/
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│ │ └── Figures/
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│ └── MA_Clustering/
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├── logs/
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```
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---
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## **Folder Details**
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#### **`Results/MainEffect/`**
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- **`Volumes/`**:
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- Stores thresholded and unthresholded Nifti-Files for all relevant statistics (ALE, Z, TFCE).
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- **`Contribution/`**:
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- Holds contribution files for MainEffect results. These contribution files allow for detailed analysis of significant clusters of convergence. Please see the [Contribution](Contribution) wiki page for more information on the structure of this file.
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- **`NullDistributions/`**:
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- Stores null distributions computed by non-linear histogram integration and Monte Carlo simulation. These are not human-readable and are only used for quicker recomputation of an effect.
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- **`Figures/`**:
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- Contains visual representations of results, including statistical maps and plots.
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#### **`Results/Probabilistic/`**
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- **`Volumes/`**:
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- Stores the averaged ALE maps for each probabilistic ALE analysis.
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- **`NullDistributions/`**:
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- Contains null distributions for the probabilistic ALE. These are not human-readable and are only used for quicker recomputation of an effect.
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- **`Figures/`**:
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- Contains visual representations of results, such as probability maps and analysis summaries.
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#### **`Results/Contrast/`**
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- **`Volumes/`**:
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- Stores thresholded contrast results for ALE analyses.
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- **`NullDistributions/`**:
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- Stores null distributions for contrast analysis. These are not human-readable and are only used for quicker recomputation.
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- **`Figures/`**:
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- Contains visual representations of results, including contrast maps and plots.
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#### **`Results/BalancedContrast/`**
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- **`Volumes/`**:
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- Stores thresholded results for balanced contrast analysis.
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- **`NullDistributions/`**:
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- Stores null distributions for balanced contrast analysis. These are not human-readable and are only used for quicker recomputation.
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- **`Figures/`**:
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- Contains visual representations of results, including balanced contrast maps and plots.
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#### **`Results/MA_Clustering/`**
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- Stores results for MA Clustering analyses.
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---
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## Logs folder
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The `logs` folder contains text files with output generated by the ALE algorithm. These files are named using the date and time of the analysis run:
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`(Year)(Month)(Day)_(Hour)(Minute).log` |