Felix Hoffstaedter
28ba30be16
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.9_r2665.simg sh -e -u -x -c '\n mkdir -p {outputs[0]} || true && cp {inputs[0]} {outputs[0]} && /singularity -b code/cat_standalone_segment_enigma_subdir_rp.m {outputs[0]}/*.nii.gz && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.* && rm -f {outputs[0]}/*.nii* && gzip {outputs[0]}/*/*.nii '",
"dsid": "3827f929-f218-4211-9e52-9e59f1dcc1a2",
"exit": 0,
"extra_inputs": [
"code/pipeline/cat12.9_r2665.simg"
],
"inputs": [
"inputs/ds005479/sub-21/anat/sub-21_T1w.nii.gz"
],
"outputs": [
"sub-21"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
11 KiB
(Stored with Git Annex)
11 KiB
(Stored with Git Annex)
| 1 | ROIid | ROIname | Vgm | Vwm | Vcsf | ROIcolor | CircNumber | CircRegion | CircLabel | Hemisphere |
|---|---|---|---|---|---|---|---|---|---|---|
| 2 | 4 | 3rd Ventricle | 0 | 0 | 1 | 0 204 0 | 135 | Ventricle | third | both |
| 3 | 11 | 4th Ventricle | 0 | 0 | 1 | 255 0 0 | 134 | Ventricle | fourth | both |
| 4 | 23 | Right Accumbens Area | 1 | 0 | 0 | 102 102 255 | 116 | Basal ganglia | Accumbens | right |
| 5 | 30 | Left Accumbens Area | 1 | 0 | 0 | 102 102 255 | 52 | Basal ganglia | Accumbens | left |
| 6 | 31 | Right Amygdala | 1 | 0 | 0 | 255 177 100 | 114 | Amygdala | Amygdala | right |
| 7 | 32 | Left Amygdala | 1 | 0 | 0 | 255 177 100 | 50 | Amygdala | Amygdala | left |
| 8 | 35 | Brain Stem | 0 | 1 | 0 | 0 255 255 | 132 | Brain stem | Brain stem | both |
| 9 | 36 | Right Caudate | 1 | 0 | 0 | 255 0 255 | 117 | Basal ganglia | Caudate | right |
| 10 | 37 | Left Caudate | 1 | 0 | 0 | 255 0 255 | 53 | Basal ganglia | Caudate | left |
| 11 | 38 | Right Cerebellum Exterior | 1 | 0 | 0 | 102 0 0 | 126 | Cerebellum | exterior | right |
| 12 | 39 | Left Cerebellum Exterior | 1 | 0 | 0 | 102 0 0 | 62 | Cerebellum | exterior | left |
| 13 | 40 | Right Cerebellum White Matter | 0 | 1 | 0 | 0 102 0 | 127 | Cerebellum | white | right |
| 14 | 41 | Left Cerebellum White Matter | 0 | 1 | 0 | 0 102 0 | 63 | Cerebellum | white | left |
| 15 | 44 | Right Cerebral White Matter | 0 | 1 | 0 | 255 215 0 | 128 | Cerebellum | white | right |
| 16 | 45 | Left Cerebral White Matter | 0 | 1 | 0 | 255 215 0 | 64 | Cerebellum | white | left |
| 17 | 46 | CSF | 0 | 0 | 1 | 0 204 0 | 136 | Ventricle | Ventricle | both |
| 18 | 47 | Right Hippocampus | 1 | 0 | 0 | 255 0 0 | 122 | Hippocampus | Hippocampus | right |
| 19 | 48 | Left Hippocampus | 1 | 0 | 0 | 255 0 0 | 58 | Hippocampus | Hippocampus | left |
| 20 | 49 | Right Inf Lat Vent | 0 | 0 | 1 | 102 102 255 | 123 | Ventricle | lateral | right |
| 21 | 50 | Left Inf Lat Vent | 0 | 0 | 1 | 102 102 255 | 59 | Ventricle | lateral | left |
| 22 | 51 | Right Lateral Ventricle | 0 | 0 | 1 | 255 177 100 | 124 | Ventricle | lateral | right |
| 23 | 52 | Left Lateral Ventricle | 0 | 0 | 1 | 255 177 100 | 60 | Ventricle | lateral | left |
| 24 | 55 | Right Pallidum | 1 | 0 | 0 | 0 255 255 | 118 | Basal ganglia | Pallidum | right |
| 25 | 56 | Left Pallidum | 1 | 0 | 0 | 0 255 255 | 54 | Basal ganglia | Pallidum | left |
| 26 | 57 | Right Putamen | 1 | 0 | 0 | 255 0 255 | 119 | Basal ganglia | Putamen | right |
| 27 | 58 | Left Putamen | 1 | 0 | 0 | 255 0 255 | 55 | Basal ganglia | Putamen | left |
| 28 | 59 | Right Thalamus Proper | 1 | 0 | 0 | 102 0 0 | 120 | Basal ganglia | Thalamus | right |
| 29 | 60 | Left Thalamus Proper | 1 | 0 | 0 | 102 0 0 | 56 | Basal ganglia | Thalamus | left |
| 30 | 61 | Right Ventral DC | 1 | 1 | 0 | 0 102 0 | 121 | Diencephalon | ventral | right |
| 31 | 62 | Left Ventral DC | 1 | 1 | 0 | 0 102 0 | 57 | Diencephalon | ventral | left |
| 32 | 63 | Right vessel | 0 | 0 | 0 | 255 215 0 | 125 | Vessel | Vessel | right |
| 33 | 64 | Left vessel | 0 | 0 | 0 | 255 215 0 | 61 | Vessel | Vessel | left |
| 34 | 69 | Optic Chiasm | 1 | 0 | 0 | 0 204 0 | 133 | Optic chaism | Optic chaism | both |
| 35 | 71 | Cerebellar Vermal Lobules I-V | 1 | 1 | 0 | 255 0 0 | 129 | Cerebellum | Cerebellum | both |
| 36 | 72 | Cerebellar Vermal Lobules VI-VII | 1 | 1 | 0 | 102 102 255 | 130 | Cerebellum | Cerebellum | both |
| 37 | 73 | Cerebellar Vermal Lobules VIII-X | 1 | 1 | 0 | 255 177 100 | 131 | Cerebellum | Cerebellum | both |
| 38 | 75 | Left Basal Forebrain | 1 | 0 | 0 | 255 177 100 | 115 | Basal Forebrain | Basal Forebrain | right |
| 39 | 76 | Right Basal Forebrain | 1 | 0 | 0 | 0 255 255 | 51 | Basal Forebrain | Basal Forebrain | left |
| 40 | 100 | Right ACgG anterior cingulate gyrus | 1 | 0 | 0 | 255 0 255 | 109 | Limbic cortex | cingulate | right |
| 41 | 101 | Left ACgG anterior cingulate gyrus | 1 | 0 | 0 | 255 0 255 | 45 | Limbic cortex | cingulate | left |
| 42 | 102 | Right AIns anterior insula | 1 | 0 | 0 | 102 0 0 | 69 | Frontal lobe | insular | right |
| 43 | 103 | Left AIns anterior insula | 1 | 0 | 0 | 102 0 0 | 5 | Frontal lobe | insular | left |
| 44 | 104 | Right AOrG anterior orbital gyrus | 1 | 0 | 0 | 0 102 0 | 65 | Frontal lobe | inferior | right |
| 45 | 105 | Left AOrG anterior orbital gyrus | 1 | 0 | 0 | 0 102 0 | 1 | Frontal lobe | inferior | left |
| 46 | 106 | Right AnG angular gyrus | 1 | 0 | 0 | 255 215 0 | 103 | Parietal lobe | lateral | right |
| 47 | 107 | Left AnG angular gyrus | 1 | 0 | 0 | 255 215 0 | 39 | Parietal lobe | lateral | left |
| 48 | 108 | Right Calc calcarine cortex | 1 | 0 | 0 | 0 204 0 | 100 | Occipital lobe | medial | right |
| 49 | 109 | Left Calc calcarine cortex | 1 | 0 | 0 | 0 204 0 | 36 | Occipital lobe | medial | left |
| 50 | 112 | Right CO central operculum | 1 | 0 | 0 | 255 0 0 | 84 | Frontal lobe | opercular | right |
| 51 | 113 | Left CO central operculum | 1 | 0 | 0 | 255 0 0 | 20 | Frontal lobe | opercular | left |
| 52 | 114 | Right Cun cuneus | 1 | 0 | 0 | 102 102 255 | 101 | Occipital lobe | medial | right |
| 53 | 115 | Left Cun cuneus | 1 | 0 | 0 | 102 102 255 | 37 | Occipital lobe | medial | left |
| 54 | 116 | Right Ent entorhinal area | 1 | 0 | 0 | 255 177 100 | 112 | Limbic cortex | medial-temporal | right |
| 55 | 117 | Left Ent entorhinal area | 1 | 0 | 0 | 255 177 100 | 48 | Limbic cortex | medial-temporal | left |
| 56 | 118 | Right FO frontal operculum | 1 | 0 | 0 | 0 255 255 | 85 | Frontal lobe | opercular | right |
| 57 | 119 | Left FO frontal operculum | 1 | 0 | 0 | 0 255 255 | 21 | Frontal lobe | opercular | left |
| 58 | 120 | Right FRP frontal pole | 1 | 0 | 0 | 255 0 255 | 71 | Frontal lobe | lateral | right |
| 59 | 121 | Left FRP frontal pole | 1 | 0 | 0 | 255 0 255 | 7 | Frontal lobe | lateral | left |
| 60 | 122 | Right FuG fusiform gyrus | 1 | 0 | 0 | 102 0 0 | 87 | Temporal lobe | inferior | right |
| 61 | 123 | Left FuG fusiform gyrus | 1 | 0 | 0 | 102 0 0 | 23 | Temporal lobe | inferior | left |
| 62 | 124 | Right GRe gyrus rectus | 1 | 0 | 0 | 0 102 0 | 78 | Frontal lobe | medial | right |
| 63 | 125 | Left GRe gyrus rectus | 1 | 0 | 0 | 0 102 0 | 14 | Frontal lobe | medial | left |
| 64 | 128 | Right IOG inferior occipital gyrus | 1 | 0 | 0 | 255 215 0 | 96 | Occipital lobe | lateral | right |
| 65 | 129 | Left IOG inferior occipital gyrus | 1 | 0 | 0 | 255 215 0 | 32 | Occipital lobe | lateral | left |
| 66 | 132 | Right ITG inferior temporal gyrus | 1 | 0 | 0 | 0 204 0 | 88 | Temporal lobe | lateral | right |
| 67 | 133 | Left ITG inferior temporal gyrus | 1 | 0 | 0 | 0 204 0 | 24 | Temporal lobe | lateral | left |
| 68 | 134 | Right LiG lingual gyrus | 1 | 0 | 0 | 255 0 0 | 102 | Occipital lobe | medial | right |
| 69 | 135 | Left LiG lingual gyrus | 1 | 0 | 0 | 255 0 0 | 38 | Occipital lobe | medial | left |
| 70 | 136 | Right LOrG lateral orbital gyrus | 1 | 0 | 0 | 102 102 255 | 66 | Frontal lobe | inferior | right |
| 71 | 137 | Left LOrG lateral orbital gyrus | 1 | 0 | 0 | 102 102 255 | 2 | Frontal lobe | inferior | left |
| 72 | 138 | Right MCgG middle cingulate gyrus | 1 | 0 | 0 | 255 177 100 | 110 | Limbic cortex | cingulate | right |
| 73 | 139 | Left MCgG middle cingulate gyrus | 1 | 0 | 0 | 255 177 100 | 46 | Limbic cortex | cingulate | left |
| 74 | 140 | Right MFC medial frontal cortex | 1 | 0 | 0 | 0 255 255 | 79 | Frontal lobe | medial | right |
| 75 | 141 | Left MFC medial frontal cortex | 1 | 0 | 0 | 0 255 255 | 15 | Frontal lobe | medial | left |
| 76 | 142 | Right MFG middle frontal gyrus | 1 | 0 | 0 | 255 0 255 | 72 | Frontal lobe | lateral | right |
| 77 | 143 | Left MFG middle frontal gyrus | 1 | 0 | 0 | 255 0 255 | 8 | Frontal lobe | lateral | left |
| 78 | 144 | Right MOG middle occipital gyrus | 1 | 0 | 0 | 102 0 0 | 97 | Occipital lobe | lateral | right |
| 79 | 145 | Left MOG middle occipital gyrus | 1 | 0 | 0 | 102 0 0 | 33 | Occipital lobe | lateral | left |
| 80 | 146 | Right MOrG medial orbital gyrus | 1 | 0 | 0 | 0 102 0 | 67 | Frontal lobe | inferior | right |
| 81 | 147 | Left MOrG medial orbital gyrus | 1 | 0 | 0 | 0 102 0 | 3 | Frontal lobe | inferior | left |
| 82 | 148 | Right MPoG postcentral gyrus medial segment | 1 | 0 | 0 | 255 215 0 | 107 | Parietal lobe | medial | right |
| 83 | 149 | Left MPoG postcentral gyrus medial segment | 1 | 0 | 0 | 255 215 0 | 43 | Parietal lobe | medial | left |
| 84 | 150 | Right MPrG precentral gyrus medial segment | 1 | 0 | 0 | 0 204 0 | 80 | Frontal lobe | medial | right |
| 85 | 151 | Left MPrG precentral gyrus medial segment | 1 | 0 | 0 | 0 204 0 | 16 | Frontal lobe | medial | left |
| 86 | 152 | Right MSFG superior frontal gyrus medial segment | 1 | 0 | 0 | 255 0 0 | 81 | Frontal lobe | medial | right |
| 87 | 153 | Left MSFG superior frontal gyrus medial segment | 1 | 0 | 0 | 255 0 0 | 17 | Frontal lobe | medial | left |
| 88 | 154 | Right MTG middle temporal gyrus | 1 | 0 | 0 | 102 102 255 | 89 | Temporal lobe | lateral | right |
| 89 | 155 | Left MTG middle temporal gyrus | 1 | 0 | 0 | 102 102 255 | 25 | Temporal lobe | lateral | left |
| 90 | 156 | Right OCP occipital pole | 1 | 0 | 0 | 255 177 100 | 98 | Occipital lobe | lateral | right |
| 91 | 157 | Left OCP occipital pole | 1 | 0 | 0 | 255 177 100 | 34 | Occipital lobe | lateral | left |
| 92 | 160 | Right OFuG occipital fusiform gyrus | 1 | 0 | 0 | 0 255 255 | 95 | Occipital lobe | inferior | right |
| 93 | 161 | Left OFuG occipital fusiform gyrus | 1 | 0 | 0 | 0 255 255 | 31 | Occipital lobe | inferior | left |
| 94 | 162 | Right OpIFG opercular part of the inferior frontal gyrus | 1 | 0 | 0 | 255 0 255 | 73 | Frontal lobe | lateral | right |
| 95 | 163 | Left OpIFG opercular part of the inferior frontal gyrus | 1 | 0 | 0 | 255 0 255 | 9 | Frontal lobe | lateral | left |
| 96 | 164 | Right OrIFG orbital part of the inferior frontal gyrus | 1 | 0 | 0 | 102 0 0 | 74 | Frontal lobe | lateral | right |
| 97 | 165 | Left OrIFG orbital part of the inferior frontal gyrus | 1 | 0 | 0 | 102 0 0 | 10 | Frontal lobe | lateral | left |
| 98 | 166 | Right PCgG posterior cingulate gyrus | 1 | 0 | 0 | 0 102 0 | 111 | Limbic cortex | cingulate | right |
| 99 | 167 | Left PCgG posterior cingulate gyrus | 1 | 0 | 0 | 0 102 0 | 47 | Limbic cortex | cingulate | left |
| 100 | 168 | Right PCu precuneus | 1 | 0 | 0 | 255 215 0 | 108 | Parietal lobe | medial | right |
| 101 | 169 | Left PCu precuneus | 1 | 0 | 0 | 255 215 0 | 44 | Parietal lobe | medial | left |
| 102 | 170 | Right PHG parahippocampal gyrus | 1 | 0 | 0 | 0 204 0 | 113 | Limbic cortex | medial-temporal | right |
| 103 | 171 | Left PHG parahippocampal gyrus | 1 | 0 | 0 | 0 204 0 | 49 | Limbic cortex | medial-temporal | left |
| 104 | 172 | Right PIns posterior insula | 1 | 0 | 0 | 255 0 0 | 70 | Frontal lobe | insular | right |
| 105 | 173 | Left PIns posterior insula | 1 | 0 | 0 | 255 0 0 | 6 | Frontal lobe | insular | left |
| 106 | 174 | Right PO parietal operculum | 1 | 0 | 0 | 102 102 255 | 86 | Frontal lobe | opercular | right |
| 107 | 175 | Left PO parietal operculum | 1 | 0 | 0 | 102 102 255 | 22 | Frontal lobe | opercular | left |
| 108 | 176 | Right PoG postcentral gyrus | 1 | 0 | 0 | 255 177 100 | 104 | Parietal lobe | lateral | right |
| 109 | 177 | Left PoG postcentral gyrus | 1 | 0 | 0 | 255 177 100 | 40 | Parietal lobe | lateral | left |
| 110 | 178 | Right POrG posterior orbital gyrus | 1 | 0 | 0 | 0 255 255 | 68 | Frontal lobe | inferior | right |
| 111 | 179 | Left POrG posterior orbital gyrus | 1 | 0 | 0 | 0 255 255 | 4 | Frontal lobe | inferior | left |
| 112 | 180 | Right PP planum polare | 1 | 0 | 0 | 255 0 255 | 92 | Temporal lobe | supra-temporal | right |
| 113 | 181 | Left PP planum polare | 1 | 0 | 0 | 255 0 255 | 28 | Temporal lobe | supra-temporal | left |
| 114 | 182 | Right PrG precentral gyrus | 1 | 0 | 0 | 102 0 0 | 75 | Frontal lobe | lateral | right |
| 115 | 183 | Left PrG precentral gyrus | 1 | 0 | 0 | 102 0 0 | 11 | Frontal lobe | lateral | left |
| 116 | 184 | Right PT planum temporale | 1 | 0 | 0 | 0 102 0 | 93 | Temporal lobe | supra-temporal | right |
| 117 | 185 | Left PT planum temporale | 1 | 0 | 0 | 0 102 0 | 29 | Temporal lobe | supra-temporal | left |
| 118 | 186 | Right SCA subcallosal area | 1 | 0 | 0 | 255 215 0 | 82 | Frontal lobe | medial | right |
| 119 | 187 | Left SCA subcallosal area | 1 | 0 | 0 | 255 215 0 | 18 | Frontal lobe | medial | left |
| 120 | 190 | Right SFG superior frontal gyrus | 1 | 0 | 0 | 0 204 0 | 76 | Frontal lobe | lateral | right |
| 121 | 191 | Left SFG superior frontal gyrus | 1 | 0 | 0 | 0 204 0 | 12 | Frontal lobe | lateral | left |
| 122 | 192 | Right SMC supplementary motor cortex | 1 | 0 | 0 | 255 0 0 | 83 | Frontal lobe | medial | right |
| 123 | 193 | Left SMC supplementary motor cortex | 1 | 0 | 0 | 255 0 0 | 19 | Frontal lobe | medial | left |
| 124 | 194 | Right SMG supramarginal gyrus | 1 | 0 | 0 | 102 102 255 | 105 | Parietal lobe | lateral | right |
| 125 | 195 | Left SMG supramarginal gyrus | 1 | 0 | 0 | 102 102 255 | 41 | Parietal lobe | lateral | left |
| 126 | 196 | Right SOG superior occipital gyrus | 1 | 0 | 0 | 255 177 100 | 99 | Occipital lobe | lateral | right |
| 127 | 197 | Left SOG superior occipital gyrus | 1 | 0 | 0 | 255 177 100 | 35 | Occipital lobe | lateral | left |
| 128 | 198 | Right SPL superior parietal lobule | 1 | 0 | 0 | 0 255 255 | 106 | Parietal lobe | lateral | right |
| 129 | 199 | Left SPL superior parietal lobule | 1 | 0 | 0 | 0 255 255 | 42 | Parietal lobe | lateral | left |
| 130 | 200 | Right STG superior temporal gyrus | 1 | 0 | 0 | 255 0 255 | 90 | Temporal lobe | lateral | right |
| 131 | 201 | Left STG superior temporal gyrus | 1 | 0 | 0 | 255 0 255 | 26 | Temporal lobe | lateral | left |
| 132 | 202 | Right TMP temporal pole | 1 | 0 | 0 | 102 0 0 | 91 | Temporal lobe | lateral | right |
| 133 | 203 | Left TMP temporal pole | 1 | 0 | 0 | 102 0 0 | 27 | Temporal lobe | lateral | left |
| 134 | 204 | Right TrIFG triangular part of the inferior frontal gyrus | 1 | 0 | 0 | 0 102 0 | 77 | Frontal lobe | lateral | right |
| 135 | 205 | Left TrIFG triangular part of the inferior frontal gyrus | 1 | 0 | 0 | 0 102 0 | 13 | Frontal lobe | lateral | left |
| 136 | 206 | Right TTG transverse temporal gyrus | 1 | 0 | 0 | 255 215 0 | 94 | Temporal lobe | supra-temporal | right |
| 137 | 207 | Left TTG transverse temporal gyrus | 1 | 0 | 0 | 255 215 0 | 30 | Temporal lobe | supra-temporal | left |