Felix Hoffstaedter
28ba30be16
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.9_r2665.simg sh -e -u -x -c '\n mkdir -p {outputs[0]} || true && cp {inputs[0]} {outputs[0]} && /singularity -b code/cat_standalone_segment_enigma_subdir_rp.m {outputs[0]}/*.nii.gz && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.* && rm -f {outputs[0]}/*.nii* && gzip {outputs[0]}/*/*.nii '",
"dsid": "3827f929-f218-4211-9e52-9e59f1dcc1a2",
"exit": 0,
"extra_inputs": [
"code/pipeline/cat12.9_r2665.simg"
],
"inputs": [
"inputs/ds005479/sub-21/anat/sub-21_T1w.nii.gz"
],
"outputs": [
"sub-21"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
2.7 KiB
(Stored with Git Annex)
2.7 KiB
(Stored with Git Annex)
| 1 | ROIid | ROIabbr | ROIname | Vgm | Vwm | Vcsf |
|---|---|---|---|---|---|---|
| 2 | 1 | lStriatum | Left Striatum | 1 | 0 | 0 |
| 3 | 2 | lGloPal | Left Globus Pallidus | 1 | 0 | 0 |
| 4 | 3 | lTha | Left Thalamus | 1 | 0 | 0 |
| 5 | 11 | lAntCerebLI_II | Left Anterior Cerebellar Lobule I-II | 1 | 1 | 0 |
| 6 | 12 | lAntCerebLIII | Left Anterior Cerebellar Lobule III | 1 | 1 | 0 |
| 7 | 13 | lAntCerebLIV | Left Anterior Cerebellar Lobule IV | 1 | 1 | 0 |
| 8 | 14 | lAntCerebLV | Left Anterior Cerebellar Lobule V | 1 | 1 | 0 |
| 9 | 15 | lSupPostCerebLVI | Left Superior Posterior Cerebellar Lobule VI | 1 | 1 | 0 |
| 10 | 16 | lSupPostCerebCI | Left Superior Posterior Cerebellar Lobule Crus I | 1 | 1 | 0 |
| 11 | 17 | lSupPostCerebCII | Left Superior Posterior Cerebellar Lobule Crus II | 1 | 1 | 0 |
| 12 | 18 | lSupPostCerebLVIIB | Left Superior Posterior Cerebellar Lobule VIIB | 1 | 1 | 0 |
| 13 | 19 | lInfPostCerebLVIIIA | Left Inferior Posterior Cerebellar Lobule VIIIA | 1 | 1 | 0 |
| 14 | 20 | lInfPostCerebLVIIIB | Left Inferior Posterior Cerebellar Lobule VIIIB | 1 | 1 | 0 |
| 15 | 21 | lInfPostCerebLIX | Left Inferior Posterior Cerebellar Lobule IX | 1 | 1 | 0 |
| 16 | 22 | lInfPostCerebLX | Left Inferior Posterior Cerebellar Lobule X | 1 | 1 | 0 |
| 17 | 23 | lAntCerebWM | Left Cerebellar White Matter | 0 | 1 | 0 |
| 18 | 26 | lAmy | Left Amygdala | 1 | 0 | 0 |
| 19 | 31 | lHCA1 | Left Hippocampus CA1 | 1 | 1 | 0 |
| 20 | 32 | lSub | Left Subiculum | 1 | 1 | 0 |
| 21 | 33 | lFor | Left Fornix | 0 | 1 | 0 |
| 22 | 34 | lCA4 | Left CA4/Dentate Gyrus | 1 | 1 | 0 |
| 23 | 35 | lCA2_3 | Left CA2/CA3 | 1 | 1 | 0 |
| 24 | 36 | lStratum | Left Stratum Radiatum/Lacunosum/Moleculare | 1 | 1 | 0 |
| 25 | 37 | lFimbra | Left Fimbria | 0 | 1 | 0 |
| 26 | 38 | lMamBody | Left Mammillary body | 0 | 1 | 0 |
| 27 | 39 | lAlveus | Left Alveus | 0 | 1 | 0 |
| 28 | 101 | rStriatum | Right Striatum | 1 | 0 | 0 |
| 29 | 102 | rGloPal | Right Globus Pallidus | 1 | 0 | 0 |
| 30 | 103 | rTha | Right Thalamus | 1 | 0 | 0 |
| 31 | 111 | rAntCerebLI_II | Right Anterior Cerebellar Lobule I-II | 1 | 1 | 0 |
| 32 | 112 | rAntCerebLIII | Right Anterior Cerebellar Lobule III | 1 | 1 | 0 |
| 33 | 113 | rAntCerebLIV | Right Anterior Cerebellar Lobule IV | 1 | 1 | 0 |
| 34 | 114 | rAntCerebLV | Right Anterior Cerebellar Lobule V | 1 | 1 | 0 |
| 35 | 115 | rSupPostCerebLVI | Right Superior Posterior Cerebellar Lobule VI | 1 | 1 | 0 |
| 36 | 116 | rSupPostCerebCI | Right Superior Posterior Cerebellar Lobule Crus I | 1 | 1 | 0 |
| 37 | 117 | rSupPostCerebCII | Right Superior Posterior Cerebellar Lobule Crus II | 1 | 1 | 0 |
| 38 | 118 | rSupPostCerebLVIIB | Right Superior Posterior Cerebellar Lobule VIIB | 1 | 1 | 0 |
| 39 | 119 | rInfPostCerebLVIIIA | Right Inferior Posterior Cerebellar Lobule VIIIA | 1 | 1 | 0 |
| 40 | 120 | rInfPostCerebLVIIIB | Right Inferior Posterior Cerebellar Lobule VIIIB | 1 | 1 | 0 |
| 41 | 121 | rInfPostCerebLIX | Right Inferior Posterior Cerebellar Lobule IX | 1 | 1 | 0 |
| 42 | 122 | rInfPostCerebLX | Right Inferior Posterior Cerebellar Lobule X | 1 | 1 | 0 |
| 43 | 123 | rAntCerebWM | Right Cerebellar White Matter | 0 | 1 | 0 |
| 44 | 126 | rAmy | Right Amygdala | 1 | 0 | 0 |
| 45 | 131 | rHCA1 | Right Hippocampus CA1 | 1 | 1 | 0 |
| 46 | 132 | rSub | Right Subiculum | 1 | 1 | 0 |
| 47 | 133 | rFor | Right Fornix | 0 | 1 | 0 |
| 48 | 134 | rCA4 | Right CA4/Dentate Gyrus | 1 | 1 | 0 |
| 49 | 135 | rCA2_3 | Right CA2/CA3 | 1 | 1 | 0 |
| 50 | 136 | rStratum | Right Stratum Radiatum/Lacunosum/Moleculare | 1 | 1 | 0 |
| 51 | 137 | rFimbra | Right Fimbria | 0 | 1 | 0 |
| 52 | 138 | rMamBody | Right Mammillary body | 0 | 1 | 0 |
| 53 | 139 | rAlveus | Right Alveus | 0 | 1 | 0 |