Felix Hoffstaedter
b91b8aaa47
=== Do not change lines below ===
{
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"exit": 0,
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],
"inputs": [
"sourcedata/raw/sub-0086",
"sourcedata/raw/dataset_description.json"
],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
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616 lines
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<li class="nav-item"><a class="nav-link" href="#Basic echo-wise reports">Basic echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended echo-wise reports">Extended echo-wise reports</a></li>
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<li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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About
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<li><a class="dropdown-item" href="#errors">Errors</a></li>
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</li>
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</div>
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</nav>
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<noscript>
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<h1 class="text-danger"> The navigation menu uses Javascript. Without it this report might not work as expected </h1>
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</noscript>
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<div id="Basic echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<div id="acquisition-mb8_datatype-figures_desc-stdev_run-01_session-03_subject-0086_suffix-bold_task-social" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-stdev_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-stdev_bold.svg" target="_blank">sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-stdev_bold.svg</a></small>
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</div>
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<div id="acquisition-mb8_datatype-figures_desc-background_run-01_session-03_subject-0086_suffix-bold_task-social" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-background_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-background_bold.svg" target="_blank">sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-background_bold.svg</a></small>
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</div>
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<div id="acquisition-mb8_datatype-figures_desc-zoomed_run-01_session-03_subject-0086_suffix-bold_task-social" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-zoomed_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-zoomed_bold.svg" target="_blank">sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-zoomed_bold.svg</a></small>
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</div>
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<div id="acquisition-mb8_datatype-figures_desc-carpet_run-01_session-03_subject-0086_suffix-bold_task-social" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-carpet_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-carpet_bold.svg" target="_blank">sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-carpet_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended echo-wise reports" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<div id="acquisition-mb8_datatype-figures_desc-mean_run-01_session-03_subject-0086_suffix-bold_task-social" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-mean_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-mean_bold.svg" target="_blank">sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-mean_bold.svg</a></small>
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</div>
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</div>
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<div id="Extended reports shared across echos" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<div id="acquisition-mb8_datatype-figures_desc-brainmask_run-01_session-03_subject-0086_suffix-bold_task-social" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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<img class="svg-reportlet" src="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-brainmask_bold.svg" style="width: 100%" />
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</div>
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<small>Get figure file: <a href="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-brainmask_bold.svg" target="_blank">sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-brainmask_bold.svg</a></small>
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</div>
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<div id="acquisition-mb8_datatype-figures_desc-norm_run-01_session-03_subject-0086_suffix-bold_task-social" class="ps-4 pe-4 mb-2">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<object class="svg-reportlet" type="image/svg+xml" data="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-norm_bold.svg" style="">
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Problem loading figure sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
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</div>
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<small>Get figure file: <a href="./sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-norm_bold.svg" target="_blank">sub-0086/figures/sub-0086_ses-03_task-social_acq-mb8_run-01_desc-norm_bold.svg</a></small>
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</div>
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</div>
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<div id="About" class="mt-5">
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<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<div id="errors" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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</div>
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<div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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reconstructing the provenance of the corresponding derivatives.
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</p> <div class="accordion accordion-flush" id="about-metadata">
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-0">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-0-collapse" aria-controls="about-metadata-0-collapse">
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Provenance Information
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</button>
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</h2>
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<div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-0" class="table table-sm table-striped">
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
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<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-0086/ses-03/func/sub-0086_ses-03_task-social_acq-mb8_run-01_bold.nii.gz</td></tr>
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<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
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<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
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<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
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<tr><td colspan=2>md5sum</td><td>dba2e455cbef5d8a2d59b6d7997ad53f</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-1">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
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Dataset Information
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</button>
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</h2>
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<div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-1" class="table table-sm table-striped">
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>82</td></tr>
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<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
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<tr><td colspan=2>AcquisitionTime</td><td>09:02:8.367500</td></tr>
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<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>24.888</td></tr>
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<tr><td colspan=2>BaseResolution</td><td>82</td></tr>
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<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
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<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11E_LATEST_20181129</td></tr>
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<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
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<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20201102</td></tr>
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<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.00049</td></tr>
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<tr><td colspan=2>DeviceSerialNumber</td><td>66112</td></tr>
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<tr><td colspan=2>DwellTime</td><td>2e-06</td></tr>
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<tr><td colspan=2>EchoTime</td><td>0.0272</td></tr>
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<tr><td colspan=2>EchoTrainLength</td><td>82</td></tr>
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<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.00049</td></tr>
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<tr><td colspan=2>FlipAngle</td><td>44</td></tr>
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<tr><td colspan=2>ImageComments</td><td>Unaliased MB8/PE3</td></tr>
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<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.999863, -0.0149052, -0.00716229, 0.0153579, 0.997568, 0.0679843]</td></tr>
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<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']</td></tr>
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<tr><td colspan=2>ImagingFrequency</td><td>123.252</td></tr>
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<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
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<tr><td colspan=2>InstitutionAddress</td><td>Maynard 3,Hanover,NH,US,03755</td></tr>
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<tr><td colspan=2>InstitutionName</td><td>Dartmouth College - PBS</td></tr>
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<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
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<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
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<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
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<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
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<tr><td colspan=2>ManufacturersModelName</td><td>Prisma</td></tr>
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<tr><td colspan=2>Modality</td><td>MR</td></tr>
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<tr><td colspan=2>MultibandAccelerationFactor</td><td>8</td></tr>
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<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
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<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
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<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
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<tr><td colspan=2>PercentSampling</td><td>100</td></tr>
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<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
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<tr><td colspan=2>PhaseEncodingSteps</td><td>82</td></tr>
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<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
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<tr><td colspan=2>PixelBandwidth</td><td>3050</td></tr>
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<tr><td colspan=2>ProcedureStepDescription</td><td>Wager_Wager^1076_spacetop</td></tr>
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<tr><td colspan=2>ProtocolName</td><td>func_run-01_task-social_acq-ap-mb8</td></tr>
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<tr><td colspan=2>PulseSequenceDetails</td><td>%CustomerSeq%\cmrr_mbep2d_bold</td></tr>
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<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HEA;HEP</td></tr>
|
|
<tr><td colspan=2>ReceiveCoilName</td><td>Head_32</td></tr>
|
|
<tr><td colspan=2>ReconMatrixPE</td><td>82</td></tr>
|
|
<tr><td colspan=2>RepetitionTime</td><td>0.46</td></tr>
|
|
<tr><td colspan=2>SAR</td><td>0.0952045</td></tr>
|
|
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
|
|
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
|
|
<tr><td colspan=2>SequenceName</td><td>epfid2d1_82</td></tr>
|
|
<tr><td colspan=2>SequenceVariant</td><td>SK\SS</td></tr>
|
|
<tr><td colspan=2>SeriesDescription</td><td>func_run-01_task-social_acq-ap-mb8</td></tr>
|
|
<tr><td colspan=2>SeriesNumber</td><td>8</td></tr>
|
|
<tr><td colspan=2>ShimSetting</td><td>[4147, -7754, -7279, 646, -41, -142, 94, 72]</td></tr>
|
|
<tr><td colspan=2>SliceThickness</td><td>2.7</td></tr>
|
|
<tr><td colspan=2>SliceTiming</td><td>[0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19]</td></tr>
|
|
<tr><td colspan=2>SoftwareVersions</td><td>syngo MR E11</td></tr>
|
|
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.7</td></tr>
|
|
<tr><td colspan=2>StationName</td><td>AWP66112</td></tr>
|
|
<tr><td colspan=2>TaskName</td><td>social</td></tr>
|
|
<tr><td colspan=2>TotalReadoutTime</td><td>0.03969</td></tr>
|
|
<tr><td colspan=2>TxRefAmp</td><td>236.686</td></tr>
|
|
<tr><td colspan=2>WipMemBlock</td><td>eeee476f-9a5c-4edf-98b0-d8bf6a4e8a3c||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja</td></tr>
|
|
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.6825599670410156, 0.04120420292019844, -0.016555195674300194, 111.66639709472656], [0.03998943790793419, 2.6764025688171387, 0.1838293969631195, -102.57610321044922], [-0.019215893000364304, -0.182396799325943, 2.6936838626861572, -65.18501281738281], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
|
|
<tr><td>dcmmeta</td><td>shape</td><td>[82, 82, 56, 872]</td></tr>
|
|
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
|
|
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
|
|
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337, 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376, 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415, 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493, 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519, 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558, 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597, 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636, 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675, 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753, 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779, 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805, 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818, 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831, 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844, 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857, 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870, 871, 872], 'AcquisitionTime': ['090208.367500', '090208.827500', '090209.287500', '090209.747500', '090210.207500', '090210.667500', '090211.127500', '090211.587500', '090212.047500', '090212.507500', '090212.967500', '090213.427500', '090213.887500', '090214.347500', '090214.807500', '090215.267500', '090215.727500', '090216.187500', '090216.647500', '090217.107500', '090217.567500', '090218.027500', '090218.487500', '090218.947500', '090219.407500', '090219.867500', '090220.327500', '090220.787500', '090221.247500', '090221.707500', '090222.167500', '090222.627500', '090223.087500', '090223.547500', '090224.007500', '090224.467500', '090224.927500', '090225.387500', 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'090345.887500', '090346.347500', '090346.807500', '090347.267500', '090347.727500', '090348.187500', '090348.647500', '090349.107500', '090349.567500', '090350.027500', '090350.487500', '090350.947500', '090351.407500', '090351.867500', '090352.327500', '090352.787500', '090353.247500', '090353.707500', '090354.167500', '090354.627500', '090355.087500', '090355.547500', '090356.007500', '090356.467500', '090356.927500', '090357.387500', '090357.847500', '090358.307500', '090358.767500', '090359.227500', '090359.687500', '090400.147500', '090400.607500', '090401.067500', '090401.527500', '090401.987500', '090402.447500', '090402.907500', '090403.367500', '090403.827500', '090404.287500', '090404.747500', '090405.207500', '090405.667500', '090406.127500', '090406.587500', '090407.047500', '090407.507500', '090407.967500', '090408.427500', '090408.887500', '090409.347500', '090409.807500', '090410.267500', '090410.727500', '090411.187500', '090411.647500', '090412.107500', 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'090439.247500', '090439.707500', '090440.167500', '090440.627500', '090441.087500', '090441.547500', '090442.007500', '090442.467500', '090442.927500', '090443.387500', '090443.847500', '090444.307500', '090444.767500', '090445.227500', '090445.687500', '090446.147500', '090446.607500', '090447.067500', '090447.527500', '090447.987500', '090448.447500', '090448.907500', '090449.367500', '090449.827500', '090450.287500', '090450.747500', '090451.207500', '090451.667500', '090452.127500', '090452.587500', '090453.047500', '090453.507500', '090453.967500', '090454.427500', '090454.887500', '090455.347500', '090455.807500', '090456.267500', '090456.727500', '090457.187500', '090457.647500', '090458.107500', '090458.567500', '090459.027500', '090459.487500', '090459.947500', '090500.407500', '090500.867500', '090501.327500', '090501.787500', '090502.247500', '090502.707500', '090503.167500', '090503.627500', '090504.087500', '090504.547500', '090505.007500', '090505.467500', '090505.927500', '090506.387500', '090506.847500', '090507.307500', '090507.767500', '090508.227500', '090508.687500', '090509.147500', '090509.607500', '090510.067500', '090510.527500', '090510.987500', '090511.447500', '090511.907500', '090512.367500', '090512.827500', '090513.287500', '090513.747500', '090514.207500', '090514.667500', '090515.127500', '090515.587500', '090516.047500', '090516.507500', '090516.967500', '090517.427500', '090517.887500', '090518.347500', '090518.807500', '090519.267500', '090519.727500', '090520.187500', '090520.647500', '090521.107500', '090521.567500', '090522.027500', '090522.487500', '090522.947500', '090523.407500', '090523.867500', '090524.327500', '090524.787500', '090525.247500', '090525.707500', '090526.167500', '090526.627500', '090527.087500', '090527.547500', '090528.007500', '090528.467500', '090528.927500', '090529.387500', '090529.847500', '090530.307500', '090530.767500', '090531.227500', '090531.687500', '090532.147500', 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10142.0, 10137.0, 10213.0, 10130.0, 10172.0, 10217.0, 10150.0, 10159.0, 10134.0, 10163.0, 10200.0, 10138.0, 10190.0, 10216.0, 10148.0, 10178.0, 10211.0, 10131.0, 10176.0, 10235.0, 10154.0, 10158.0, 10131.0, 10148.0, 10185.0, 10111.0, 10165.0, 10220.0, 10150.0, 10145.0, 10197.0, 10134.0, 10155.0, 10215.0, 10158.0, 10227.0, 10176.0, 10187.0, 10210.0, 10156.0, 10203.0, 10261.0, 10170.0, 10214.0, 10221.0, 10194.0, 10232.0, 10177.0, 10186.0, 10187.0, 10170.0, 10170.0, 10174.0, 10175.0, 10178.0, 10174.0, 10203.0, 10224.0, 10236.0, 10237.0, 10193.0, 10199.0, 10138.0, 10177.0, 10205.0, 10164.0, 10228.0, 10234.0, 10161.0, 10173.0, 10154.0, 10143.0, 10186.0, 10159.0, 10201.0, 10202.0, 10150.0, 10174.0, 10195.0, 10131.0, 10156.0, 10219.0, 10178.0, 10186.0, 10188.0, 10150.0, 10177.0, 10136.0, 10149.0, 10233.0, 10176.0, 10172.0, 10200.0, 10145.0, 10185.0, 10223.0, 10204.0, 10231.0, 10255.0, 10195.0, 10215.0, 10182.0, 10171.0, 10254.0, 10242.0, 10191.0, 10216.0, 10143.0, 10202.0, 10240.0, 10155.0, 10236.0, 10262.0, 10174.0, 10185.0, 10233.0, 10149.0, 10200.0, 10251.0, 10174.0, 10186.0, 10140.0, 10178.0, 10216.0, 10142.0, 10215.0, 10239.0, 10172.0, 10178.0, 10211.0, 10132.0, 10181.0, 10245.0, 10175.0, 10180.0, 10138.0, 10162.0, 10199.0, 10131.0, 10210.0, 10223.0, 10136.0, 10184.0, 10199.0, 10128.0, 10179.0, 10238.0, 10151.0, 10159.0, 10170.0, 10128.0, 10177.0, 10204.0, 10180.0, 10196.0, 10143.0, 10175.0, 10198.0, 10136.0, 10204.0, 10257.0, 10169.0, 10166.0, 10150.0, 10169.0, 10203.0, 10157.0, 10155.0, 10230.0, 10158.0, 10181.0, 10204.0, 10155.0, 10181.0, 10221.0, 10178.0, 10213.0, 10185.0, 10175.0, 10207.0, 10135.0, 10179.0, 10241.0, 10186.0, 10177.0, 10204.0, 10135.0, 10175.0, 10209.0, 10128.0, 10179.0, 10210.0, 10122.0, 10138.0, 10189.0, 10114.0, 10159.0, 10220.0, 10158.0, 10164.0, 10142.0, 10164.0, 10200.0, 10133.0, 10184.0, 10241.0, 10170.0, 10168.0, 10148.0, 10177.0, 10204.0, 10189.0, 10189.0, 10203.0, 10145.0, 10143.0, 10192.0, 10111.0, 10154.0, 10218.0, 10138.0, 10159.0, 10184.0, 10128.0, 10156.0, 10144.0, 10172.0, 10190.0, 10142.0, 10180.0, 10199.0, 10133.0, 10203.0, 10237.0, 10150.0, 10167.0, 10124.0, 10161.0, 10199.0, 10153.0, 10187.0, 10201.0, 10151.0, 10158.0, 10214.0, 10120.0, 10149.0, 10192.0, 10122.0, 10190.0, 10214.0, 10142.0, 10166.0, 10141.0, 10191.0, 10250.0]}, 'slices': {}}</td></tr>
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</table>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="about-metadata-2">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
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Extracted Image quality metrics (IQMs)
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</button>
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</h2>
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<div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
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<div class="accordion-body metadata-table">
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<table id="about-metadata-table-2" class="table table-sm table-striped">
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<tr><td colspan=3>aor</td><td>0.0015793908045977014</td></tr>
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<tr><td colspan=3>aqi</td><td>0.021971947586206894</td></tr>
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<tr><td colspan=3>dummy_trs</td><td>2</td></tr>
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<tr><td>dvars</td><td colspan=2>nstd</td><td>35.63795736554654</td></tr>
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<tr><td>dvars</td><td colspan=2>std</td><td>1.183101311990794</td></tr>
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<tr><td>dvars</td><td colspan=2>vstd</td><td>1.010019580402761</td></tr>
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<tr><td colspan=3>efc</td><td>0.5011</td></tr>
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<tr><td colspan=3>fber</td><td>5630.5967</td></tr>
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<tr><td>fd</td><td colspan=2>mean</td><td>0.08695334135734274</td></tr>
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<tr><td>fd</td><td colspan=2>num</td><td>15</td></tr>
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<tr><td>fd</td><td colspan=2>perc</td><td>1.7241379310344827</td></tr>
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<tr><td>fwhm</td><td colspan=2>avg</td><td>2.531689962573173</td></tr>
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<tr><td>fwhm</td><td colspan=2>x</td><td>2.457677850495303</td></tr>
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<tr><td>fwhm</td><td colspan=2>y</td><td>2.722329116912798</td></tr>
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<tr><td>fwhm</td><td colspan=2>z</td><td>2.415062920311417</td></tr>
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<tr><td colspan=3>gcor</td><td>0.012755</td></tr>
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<tr><td>gsr</td><td colspan=2>x</td><td>-0.01501754205673933</td></tr>
|
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<tr><td>gsr</td><td colspan=2>y</td><td>0.043506067246198654</td></tr>
|
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<tr><td>size</td><td colspan=2>t</td><td>870</td></tr>
|
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<tr><td>size</td><td colspan=2>x</td><td>82</td></tr>
|
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<tr><td>size</td><td colspan=2>y</td><td>82</td></tr>
|
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<tr><td>size</td><td colspan=2>z</td><td>56</td></tr>
|
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<tr><td colspan=3>snr</td><td>4.0623763531256465</td></tr>
|
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<tr><td>spacing</td><td colspan=2>tr</td><td>0.46000000834465027</td></tr>
|
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<tr><td>spacing</td><td colspan=2>x</td><td>2.682926893234253</td></tr>
|
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<tr><td>spacing</td><td colspan=2>y</td><td>2.682926893234253</td></tr>
|
|
<tr><td>spacing</td><td colspan=2>z</td><td>2.700000047683716</td></tr>
|
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<tr><td>summary</td><td>bg</td><td>k</td><td>19.2774</td></tr>
|
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<tr><td>summary</td><td>bg</td><td>mad</td><td>48.9421</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>mean</td><td>208.5137</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>median</td><td>53.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>n</td><td>291064.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>p05</td><td>16.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>p95</td><td>991.0</td></tr>
|
|
<tr><td>summary</td><td>bg</td><td>stdv</td><td>397.8377</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>k</td><td>2.8633</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>mad</td><td>608.0128</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>mean</td><td>3790.9694</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>median</td><td>3940.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>n</td><td>85480.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>p05</td><td>1507.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>p95</td><td>5009.0</td></tr>
|
|
<tr><td>summary</td><td>fg</td><td>stdv</td><td>969.87</td></tr>
|
|
<tr><td colspan=3>tsnr</td><td>38.37382253492251</td></tr>
|
|
</table>
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|
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</div>
|
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</div>
|
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</div>
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</div>
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</div>
|
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</div>
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|
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<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%; max-height: 85%; overflow-y: auto;">
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<div class="card-header m-0">
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Rating widget
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<button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
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</div>
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<div class="card-body">
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<div class="accordion">
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcslider-head">
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<button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
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</h2>
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<div class="accordion-body">
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<li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
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<li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
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<li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
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<li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
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</ul>
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</div>
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</div>
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</div>
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcartifacts-head">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
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Record specific artifacts
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</button>
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</h2>
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<div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
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<div class="accordion-body">
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<fieldset id="qcartifacts-group" class="form-group">
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
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<label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
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<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
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<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
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<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
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<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
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<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
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<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
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|
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
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</div>
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|
<div class="form-check form-switch small">
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|
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
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<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
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</div>
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<div class="form-check form-switch small">
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<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
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<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
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</div>
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|
<div class="form-check form-switch small">
|
|
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
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</div>
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<div class="form-check form-switch small">
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|
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
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|
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
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</div>
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<div class="form-check form-switch small">
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|
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
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<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
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</div>
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<div class="form-check form-switch small">
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|
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
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</div>
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</fieldset>
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</div> <!-- accordion-body -->
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</div> <!-- accordion-collapse -->
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</div> <!-- accordion-item -->
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<div class="accordion-item">
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<h2 class="accordion-header" id="qcextra-head">
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<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
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Extra details
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</button>
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</h2>
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<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
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<div class="accordion-body">
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<div class="input-group">
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<span class="input-group-text">Comments</span>
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<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
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</div>
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<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
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<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
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<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
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<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
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<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
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</ul>
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<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
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<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
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$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
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|
|
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
} else if ( $(this).val() < 2.5 ) {
|
|
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$('#qcextra-confidence').on('input', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
});
|
|
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
});
|
|
|
|
if ( $(this).val() < 2.0 ) {
|
|
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
} else {
|
|
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
|
|
$('#qcextra-comments').bind('input propertychange', function() {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
});
|
|
|
|
$( '#btn-post' ).click( function() {
|
|
var payload = read_form();
|
|
var md5sum = "unspecified";
|
|
var params = {
|
|
'rating': payload['rating'],
|
|
'md5sum': md5sum,
|
|
'name': "",
|
|
'comment': JSON.stringify(payload['artifacts'])
|
|
};
|
|
|
|
// disable development releases
|
|
var authorization = $(this).val();
|
|
var ratingReq = new XMLHttpRequest();
|
|
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
ratingReq.setRequestHeader("Authorization", authorization);
|
|
ratingReq.onload = function () {
|
|
status = ratingReq.status;
|
|
$('#btn-post').removeClass('btn-primary');
|
|
$('#btn-post').attr('disabled', true);
|
|
$('#btn-post').attr('aria-disabled', true);
|
|
$('#btn-post').prop('disabled');
|
|
$('#btn-post').addClass('disabled');
|
|
$('#btn-post').removeClass('active');
|
|
if (status === "201") {
|
|
$('#btn-post').addClass('btn-success');
|
|
$('#btn-post').html('Posted!');
|
|
} else {
|
|
$('#btn-post').addClass('btn-danger');
|
|
$('#btn-post').html('Failed');
|
|
};
|
|
};
|
|
ratingReq.send(JSON.stringify(params));
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
$('#btn-download').removeClass('disabled');
|
|
$('#btn-download').removeAttr('aria-disabled');
|
|
$('#btn-post').removeAttr('disabled');
|
|
};
|
|
|
|
var payload = read_form();
|
|
});
|
|
|
|
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
toggle_rating();
|
|
});
|
|
</script>
|
|
</div>
|
|
|
|
<script type="text/javascript">
|
|
function toggle(id) {
|
|
var element = document.getElementById(id);
|
|
if(element.style.display == 'block')
|
|
element.style.display = 'none';
|
|
else
|
|
element.style.display = 'block';
|
|
}
|
|
</script>
|
|
</body>
|
|
</html> |