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ds004173-catqc/logs/10071107.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1300175/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1300175/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300175/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:39:23 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:39:23 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300175/ds/sub-584264/sub-584264_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-584264/sub-584264_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 64s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 5s
Refine background 3s
Final correction 4s
Final scaling 5s
37s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
5s
Use initial fine affine registration. 64s
SPM preprocessing 1 (estimate 2): 50s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 38s
Update probability maps 8s
77s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 7s
95s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
85s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 16s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 56s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 2s
109s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 26s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 16s
ROI estimation of 'mori' atlas 26s
ROI estimation of 'anatomy3' atlas 44s
ROI estimation of 'julichbrain' atlas 59s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 96s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 145s
Write results 148s
557s
Quality check 14s
/var/lib/condor/execute/dir_1300175/ds/sub-584264/report/catreport_sub-584264_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 44 second(s).
Image Quality Rating (IQR): 87.83% (B+)
GM volume (GMV): 52.45% (666.01 / 1269.75 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300175/ds/sub-584264/mri
Reports are saved in /var/lib/condor/execute/dir_1300175/ds/sub-584264/report
Labels are saved in /var/lib/condor/execute/dir_1300175/ds/sub-584264/label
------------------------------------------------------------------------
22-Oct-2025 01:04:10 - Done 'CAT12: Segmentation'
22-Oct-2025 01:04:10 - Done
Bye for now...
get(ok): sourcedata/raw/sub-584264/anat/sub-584264_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1300175/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1300175/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-584264/label/catROI_sub-584264_acq-standard_T1w.mat (file)
add(ok): sub-584264/label/catROI_sub-584264_acq-standard_T1w.xml (file)
add(ok): sub-584264/mri/it_sub-584264_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-584264/mri/it_sub-584264_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-584264/mri/m0wp1sub-584264_acq-standard_T1w.nii.gz (file)
add(ok): sub-584264/mri/mwp1sub-584264_acq-standard_T1w.nii.gz (file)
add(ok): sub-584264/mri/p0sub-584264_acq-standard_T1w.nii.gz (file)
add(ok): sub-584264/mri/t_sub-584264_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-584264/mri/t_sub-584264_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-584264/mri/wp0sub-584264_acq-standard_T1w.nii.gz (file)
add(ok): sub-584264/report/cat_sub-584264_acq-standard_T1w.mat (file)
add(ok): sub-584264/report/cat_sub-584264_acq-standard_T1w.xml (file)
add(ok): sub-584264/report/catlog_sub-584264_acq-standard_T1w.txt (file)
add(ok): sub-584264/report/catreport_sub-584264_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:05:04 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:05:04 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300175/ds/sub-584264/sub-584264_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-584264/sub-584264_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 5s
Refine background 3s
Final correction 5s
Final scaling 5s
37s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
6s
Use initial fine affine registration. 60s
SPM preprocessing 1 (estimate 2): 62s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 38s
Update probability maps 8s
77s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 10s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 21s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
83s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 14s
Ventricle detection 11s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 64s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
111s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 26s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 20s
ROI estimation of 'anatomy3' atlas 29s
ROI estimation of 'julichbrain' atlas 37s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 47s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 98s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 144s
Write results 147s
513s
Quality check 14s
/var/lib/condor/execute/dir_1300175/ds/sub-584264/report/catreport_sub-584264_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 59 second(s).
Image Quality Rating (IQR): 86.58% (B)
GM volume (GMV): 49.83% (619.19 / 1242.68 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300175/ds/sub-584264/mri
Reports are saved in /var/lib/condor/execute/dir_1300175/ds/sub-584264/report
Labels are saved in /var/lib/condor/execute/dir_1300175/ds/sub-584264/label
------------------------------------------------------------------------
22-Oct-2025 01:29:06 - Done 'CAT12: Segmentation'
22-Oct-2025 01:29:06 - Done
Bye for now...
get(ok): sourcedata/raw/sub-584264/anat/sub-584264_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-584264/label/catROI_sub-584264_acq-standard_T1w.mat (file)
unlock(ok): sub-584264/mri/it_sub-584264_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-584264/mri/it_sub-584264_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-584264/mri/m0wp1sub-584264_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-584264/mri/mwp1sub-584264_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-584264/mri/p0sub-584264_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-584264/mri/t_sub-584264_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-584264/mri/t_sub-584264_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-584264/mri/wp0sub-584264_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-584264/report/cat_sub-584264_acq-standard_T1w.mat (file)
unlock(ok): sub-584264/report/catreport_sub-584264_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300175/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-584264/label/catROI_sub-584264_acq-headmotion2_T1w.mat (file)
add(ok): sub-584264/label/catROI_sub-584264_acq-headmotion2_T1w.xml (file)
add(ok): sub-584264/mri/it_sub-584264_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-584264/mri/it_sub-584264_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-584264/mri/m0wp1sub-584264_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-584264/mri/mwp1sub-584264_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-584264/mri/p0sub-584264_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-584264/mri/t_sub-584264_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-584264/mri/t_sub-584264_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-584264/mri/wp0sub-584264_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-584264/report/cat_sub-584264_acq-headmotion2_T1w.mat (file)
add(ok): sub-584264/report/cat_sub-584264_acq-headmotion2_T1w.xml (file)
add(ok): sub-584264/report/catlog_sub-584264_acq-headmotion2_T1w.txt (file)
add(ok): sub-584264/report/catreport_sub-584264_acq-headmotion2_T1w.pdf (file)
add(ok): sub-584264/label/catROI_sub-584264_acq-standard_T1w.mat (file)
add(ok): sub-584264/mri/it_sub-584264_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-584264/mri/it_sub-584264_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-584264/mri/m0wp1sub-584264_acq-standard_T1w.nii.gz (file)
add(ok): sub-584264/mri/mwp1sub-584264_acq-standard_T1w.nii.gz (file)
add(ok): sub-584264/mri/p0sub-584264_acq-standard_T1w.nii.gz (file)
add(ok): sub-584264/mri/t_sub-584264_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-584264/mri/t_sub-584264_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-584264/mri/wp0sub-584264_acq-standard_T1w.nii.gz (file)
add(ok): sub-584264/report/cat_sub-584264_acq-standard_T1w.mat (file)
add(ok): sub-584264/report/catreport_sub-584264_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:30:01 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:30:01 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1300175/ds/sub-584264/sub-584264_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-584264/sub-584264_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 60s
Affine preprocessing (APP)
Initialize 7s
Estimate background 6s
Initial correction 6s
Refine background 3s
Final correction 5s
Final scaling 5s
38s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
9s
Use initial fine affine registration. 63s
SPM preprocessing 1 (estimate 2): 54s
SPM preprocessing 2 (write)
Write Segmentation 18s
Update Segmentation 13s
Update Skull-Stripping 37s
Update probability maps 9s
77s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 9s
98s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 11s
Estimate local tissue thresholds (WM) 18s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
84s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 14s
Ventricle detection 12s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 54s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 3s
Final corrections 2s
101s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 27s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
10s
8s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 7s
ROI estimation of 'neuromorphometrics' atlas 27s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 23s
ROI estimation of 'julichbrain' atlas 32s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 52s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 105s
Write results 108s
363s
Quality check 14s
/var/lib/condor/execute/dir_1300175/ds/sub-584264/report/catreport_sub-584264_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 21 minute(s) and 12 second(s).
Image Quality Rating (IQR): 86.91% (B+)
GM volume (GMV): 51.28% (640.66 / 1249.36 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1300175/ds/sub-584264/mri
Reports are saved in /var/lib/condor/execute/dir_1300175/ds/sub-584264/report
Labels are saved in /var/lib/condor/execute/dir_1300175/ds/sub-584264/label
------------------------------------------------------------------------
22-Oct-2025 01:51:17 - Done 'CAT12: Segmentation'
22-Oct-2025 01:51:17 - Done
Bye for now...
get(ok): sourcedata/raw/sub-584264/anat/sub-584264_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-584264/label/catROI_sub-584264_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-584264/label/catROI_sub-584264_acq-standard_T1w.mat (file)
unlock(ok): sub-584264/mri/it_sub-584264_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-584264/mri/it_sub-584264_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-584264/mri/it_sub-584264_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-584264/mri/it_sub-584264_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-584264/mri/m0wp1sub-584264_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-584264/mri/m0wp1sub-584264_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-584264/mri/mwp1sub-584264_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-584264/mri/mwp1sub-584264_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-584264/mri/p0sub-584264_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-584264/mri/p0sub-584264_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-584264/mri/t_sub-584264_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-584264/mri/t_sub-584264_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-584264/mri/t_sub-584264_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-584264/mri/t_sub-584264_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-584264/mri/wp0sub-584264_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-584264/mri/wp0sub-584264_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-584264/report/cat_sub-584264_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-584264/report/cat_sub-584264_acq-standard_T1w.mat (file)
unlock(ok): sub-584264/report/catreport_sub-584264_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-584264/report/catreport_sub-584264_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1300175/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-584264/label/catROI_sub-584264_acq-headmotion1_T1w.mat (file)
add(ok): sub-584264/label/catROI_sub-584264_acq-headmotion1_T1w.xml (file)
add(ok): sub-584264/mri/it_sub-584264_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-584264/mri/it_sub-584264_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-584264/mri/m0wp1sub-584264_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-584264/mri/mwp1sub-584264_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-584264/mri/p0sub-584264_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-584264/mri/t_sub-584264_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-584264/mri/t_sub-584264_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-584264/mri/wp0sub-584264_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-584264/report/cat_sub-584264_acq-headmotion1_T1w.mat (file)
add(ok): sub-584264/report/cat_sub-584264_acq-headmotion1_T1w.xml (file)
add(ok): sub-584264/report/catlog_sub-584264_acq-headmotion1_T1w.txt (file)
add(ok): sub-584264/report/catreport_sub-584264_acq-headmotion1_T1w.pdf (file)
add(ok): sub-584264/label/catROI_sub-584264_acq-headmotion2_T1w.mat (file)
add(ok): sub-584264/label/catROI_sub-584264_acq-standard_T1w.mat (file)
add(ok): sub-584264/mri/it_sub-584264_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-584264/mri/it_sub-584264_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-584264/mri/it_sub-584264_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-584264/mri/it_sub-584264_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-584264/mri/m0wp1sub-584264_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-584264/mri/m0wp1sub-584264_acq-standard_T1w.nii.gz (file)
add(ok): sub-584264/mri/mwp1sub-584264_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-584264/mri/mwp1sub-584264_acq-standard_T1w.nii.gz (file)
add(ok): sub-584264/mri/p0sub-584264_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-584264/mri/p0sub-584264_acq-standard_T1w.nii.gz (file)
add(ok): sub-584264/mri/t_sub-584264_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-584264/mri/t_sub-584264_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-584264/mri/t_sub-584264_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-584264/mri/t_sub-584264_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-584264/mri/wp0sub-584264_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-584264/mri/wp0sub-584264_acq-standard_T1w.nii.gz (file)
add(ok): sub-584264/report/cat_sub-584264_acq-headmotion2_T1w.mat (file)
add(ok): sub-584264/report/cat_sub-584264_acq-standard_T1w.mat (file)
add(ok): sub-584264/report/catreport_sub-584264_acq-headmotion2_T1w.pdf (file)
add(ok): sub-584264/report/catreport_sub-584264_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-584264/label/catROI_sub-584264_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/label/catROI_sub-584264_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/label/catROI_sub-584264_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/it_sub-584264_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/it_sub-584264_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/it_sub-584264_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/it_sub-584264_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/it_sub-584264_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/it_sub-584264_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/m0wp1sub-584264_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/m0wp1sub-584264_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/m0wp1sub-584264_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/mwp1sub-584264_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/mwp1sub-584264_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/mwp1sub-584264_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/p0sub-584264_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/p0sub-584264_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/p0sub-584264_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/t_sub-584264_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/t_sub-584264_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/t_sub-584264_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/t_sub-584264_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/t_sub-584264_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/t_sub-584264_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/wp0sub-584264_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/wp0sub-584264_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-584264/mri/wp0sub-584264_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-584264/report/cat_sub-584264_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/report/cat_sub-584264_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/report/cat_sub-584264_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-584264/report/catreport_sub-584264_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-584264/report/catreport_sub-584264_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-584264/report/catreport_sub-584264_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001139 seconds
flock: executing git
SUCCESS
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