f.hoffstaedter/ds004173-catqc
1
0
Fork 0
Code Pull requests Packages Activity
ds004173-catqc/logs/10071101.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

597 lines
37 KiB (Stored with Git Annex)
Text
Raw Permalink Blame History

This file contains invisible Unicode characters

This file contains invisible Unicode characters that are indistinguishable to humans but may be processed differently by a computer. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

install(ok): /var/lib/condor/execute/dir_3197881/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197881/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197881/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197881/ds/sub-669067/sub-669067_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-669067/sub-669067_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 65s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
48s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
90s
SPM preprocessing 1 (estimate 2): 63s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 48s
Update probability maps 10s
98s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 8s
115s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.02) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
102s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 73s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
135s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
13s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 38s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 37s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 22s
ROI estimation of 'mori' atlas 41s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 136s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 203s
Write results 207s
789s
Quality check 18s
/var/lib/condor/execute/dir_3197881/ds/sub-669067/report/catreport_sub-669067_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 36 second(s).
Image Quality Rating (IQR): 86.90% (B+)
GM volume (GMV): 44.67% (605.14 / 1354.81 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197881/ds/sub-669067/mri
Reports are saved in /var/lib/condor/execute/dir_3197881/ds/sub-669067/report
Labels are saved in /var/lib/condor/execute/dir_3197881/ds/sub-669067/label
------------------------------------------------------------------------
22-Oct-2025 01:12:46 - Done 'CAT12: Segmentation'
22-Oct-2025 01:12:46 - Done
Bye for now...
get(ok): sourcedata/raw/sub-669067/anat/sub-669067_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197881/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197881/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-669067/label/catROI_sub-669067_acq-headmotion1_T1w.mat (file)
add(ok): sub-669067/label/catROI_sub-669067_acq-headmotion1_T1w.xml (file)
add(ok): sub-669067/mri/it_sub-669067_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-669067/mri/it_sub-669067_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-669067/mri/m0wp1sub-669067_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-669067/mri/mwp1sub-669067_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-669067/mri/p0sub-669067_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-669067/mri/t_sub-669067_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-669067/mri/t_sub-669067_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-669067/mri/wp0sub-669067_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-669067/report/cat_sub-669067_acq-headmotion1_T1w.mat (file)
add(ok): sub-669067/report/cat_sub-669067_acq-headmotion1_T1w.xml (file)
add(ok): sub-669067/report/catlog_sub-669067_acq-headmotion1_T1w.txt (file)
add(ok): sub-669067/report/catreport_sub-669067_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:13:45 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:13:45 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197881/ds/sub-669067/sub-669067_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-669067/sub-669067_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
47s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
82s
SPM preprocessing 1 (estimate 2): 73s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
96s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 7s
115s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.08) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
103s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.09) 61s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
119s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
13s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 38s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 29s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 18s
ROI estimation of 'mori' atlas 27s
ROI estimation of 'anatomy3' atlas 47s
ROI estimation of 'julichbrain' atlas 65s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 59s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 133s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 199s
Write results 204s
698s
Quality check 19s
/var/lib/condor/execute/dir_3197881/ds/sub-669067/report/catreport_sub-669067_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 29 minute(s) and 58 second(s).
Image Quality Rating (IQR): 86.13% (B)
GM volume (GMV): 43.76% (593.32 / 1355.85 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197881/ds/sub-669067/mri
Reports are saved in /var/lib/condor/execute/dir_3197881/ds/sub-669067/report
Labels are saved in /var/lib/condor/execute/dir_3197881/ds/sub-669067/label
------------------------------------------------------------------------
22-Oct-2025 01:43:46 - Done 'CAT12: Segmentation'
22-Oct-2025 01:43:46 - Done
Bye for now...
get(ok): sourcedata/raw/sub-669067/anat/sub-669067_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-669067/label/catROI_sub-669067_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-669067/mri/it_sub-669067_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-669067/mri/it_sub-669067_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-669067/mri/m0wp1sub-669067_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-669067/mri/mwp1sub-669067_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-669067/mri/p0sub-669067_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-669067/mri/t_sub-669067_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-669067/mri/t_sub-669067_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-669067/mri/wp0sub-669067_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-669067/report/cat_sub-669067_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-669067/report/catreport_sub-669067_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197881/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-669067/label/catROI_sub-669067_acq-headmotion2_T1w.mat (file)
add(ok): sub-669067/label/catROI_sub-669067_acq-headmotion2_T1w.xml (file)
add(ok): sub-669067/mri/it_sub-669067_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-669067/mri/it_sub-669067_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-669067/mri/m0wp1sub-669067_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-669067/mri/mwp1sub-669067_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-669067/mri/p0sub-669067_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-669067/mri/t_sub-669067_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-669067/mri/t_sub-669067_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-669067/mri/wp0sub-669067_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-669067/report/cat_sub-669067_acq-headmotion2_T1w.mat (file)
add(ok): sub-669067/report/cat_sub-669067_acq-headmotion2_T1w.xml (file)
add(ok): sub-669067/report/catlog_sub-669067_acq-headmotion2_T1w.txt (file)
add(ok): sub-669067/report/catreport_sub-669067_acq-headmotion2_T1w.pdf (file)
add(ok): sub-669067/label/catROI_sub-669067_acq-headmotion1_T1w.mat (file)
add(ok): sub-669067/mri/it_sub-669067_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-669067/mri/it_sub-669067_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-669067/mri/m0wp1sub-669067_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-669067/mri/mwp1sub-669067_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-669067/mri/p0sub-669067_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-669067/mri/t_sub-669067_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-669067/mri/t_sub-669067_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-669067/mri/wp0sub-669067_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-669067/report/cat_sub-669067_acq-headmotion1_T1w.mat (file)
add(ok): sub-669067/report/catreport_sub-669067_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:45:05 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:45:05 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197881/ds/sub-669067/sub-669067_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-669067/sub-669067_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
46s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 16s
Update Skull-Stripping 46s
Update probability maps 9s
94s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 3s
107s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.04) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
103s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 19s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 65s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
129s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 22s
ROI estimation of 'anatomy3' atlas 31s
ROI estimation of 'julichbrain' atlas 42s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 103s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 170s
Write results 174s
556s
Quality check 17s
/var/lib/condor/execute/dir_3197881/ds/sub-669067/report/catreport_sub-669067_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 8 second(s).
Image Quality Rating (IQR): 87.98% (B+)
GM volume (GMV): 45.65% (626.72 / 1372.89 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197881/ds/sub-669067/mri
Reports are saved in /var/lib/condor/execute/dir_3197881/ds/sub-669067/report
Labels are saved in /var/lib/condor/execute/dir_3197881/ds/sub-669067/label
------------------------------------------------------------------------
22-Oct-2025 02:12:17 - Done 'CAT12: Segmentation'
22-Oct-2025 02:12:17 - Done
Bye for now...
get(ok): sourcedata/raw/sub-669067/anat/sub-669067_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-669067/label/catROI_sub-669067_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-669067/label/catROI_sub-669067_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-669067/mri/it_sub-669067_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-669067/mri/it_sub-669067_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-669067/mri/it_sub-669067_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-669067/mri/it_sub-669067_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-669067/mri/m0wp1sub-669067_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-669067/mri/m0wp1sub-669067_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-669067/mri/mwp1sub-669067_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-669067/mri/mwp1sub-669067_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-669067/mri/p0sub-669067_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-669067/mri/p0sub-669067_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-669067/mri/t_sub-669067_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-669067/mri/t_sub-669067_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-669067/mri/t_sub-669067_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-669067/mri/t_sub-669067_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-669067/mri/wp0sub-669067_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-669067/mri/wp0sub-669067_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-669067/report/cat_sub-669067_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-669067/report/cat_sub-669067_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-669067/report/catreport_sub-669067_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-669067/report/catreport_sub-669067_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197881/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-669067/label/catROI_sub-669067_acq-standard_T1w.mat (file)
add(ok): sub-669067/label/catROI_sub-669067_acq-standard_T1w.xml (file)
add(ok): sub-669067/mri/it_sub-669067_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-669067/mri/it_sub-669067_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-669067/mri/m0wp1sub-669067_acq-standard_T1w.nii.gz (file)
add(ok): sub-669067/mri/mwp1sub-669067_acq-standard_T1w.nii.gz (file)
add(ok): sub-669067/mri/p0sub-669067_acq-standard_T1w.nii.gz (file)
add(ok): sub-669067/mri/t_sub-669067_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-669067/mri/t_sub-669067_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-669067/mri/wp0sub-669067_acq-standard_T1w.nii.gz (file)
add(ok): sub-669067/report/cat_sub-669067_acq-standard_T1w.mat (file)
add(ok): sub-669067/report/cat_sub-669067_acq-standard_T1w.xml (file)
add(ok): sub-669067/report/catlog_sub-669067_acq-standard_T1w.txt (file)
add(ok): sub-669067/report/catreport_sub-669067_acq-standard_T1w.pdf (file)
add(ok): sub-669067/label/catROI_sub-669067_acq-headmotion1_T1w.mat (file)
add(ok): sub-669067/label/catROI_sub-669067_acq-headmotion2_T1w.mat (file)
add(ok): sub-669067/mri/it_sub-669067_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-669067/mri/it_sub-669067_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-669067/mri/it_sub-669067_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-669067/mri/it_sub-669067_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-669067/mri/m0wp1sub-669067_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-669067/mri/m0wp1sub-669067_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-669067/mri/mwp1sub-669067_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-669067/mri/mwp1sub-669067_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-669067/mri/p0sub-669067_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-669067/mri/p0sub-669067_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-669067/mri/t_sub-669067_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-669067/mri/t_sub-669067_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-669067/mri/t_sub-669067_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-669067/mri/t_sub-669067_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-669067/mri/wp0sub-669067_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-669067/mri/wp0sub-669067_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-669067/report/cat_sub-669067_acq-headmotion1_T1w.mat (file)
add(ok): sub-669067/report/cat_sub-669067_acq-headmotion2_T1w.mat (file)
add(ok): sub-669067/report/catreport_sub-669067_acq-headmotion1_T1w.pdf (file)
add(ok): sub-669067/report/catreport_sub-669067_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-669067/label/catROI_sub-669067_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/label/catROI_sub-669067_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/label/catROI_sub-669067_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/it_sub-669067_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/it_sub-669067_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/it_sub-669067_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/it_sub-669067_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/it_sub-669067_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/it_sub-669067_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/m0wp1sub-669067_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/m0wp1sub-669067_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/m0wp1sub-669067_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/mwp1sub-669067_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/mwp1sub-669067_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/mwp1sub-669067_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/p0sub-669067_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/p0sub-669067_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/p0sub-669067_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/t_sub-669067_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/t_sub-669067_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/t_sub-669067_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/t_sub-669067_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/t_sub-669067_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/t_sub-669067_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/wp0sub-669067_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/wp0sub-669067_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-669067/mri/wp0sub-669067_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-669067/report/cat_sub-669067_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/report/cat_sub-669067_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/report/cat_sub-669067_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-669067/report/catreport_sub-669067_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-669067/report/catreport_sub-669067_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-669067/report/catreport_sub-669067_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001098 seconds
flock: executing git
SUCCESS
View git blame Copy permalink