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ds004173-catqc/logs/10071100.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197796/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197796/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197796/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197796/ds/sub-830976/sub-830976_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-830976/sub-830976_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 53s
Affine preprocessing (APP)
Initialize 8s
Estimate background 9s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
48s
Correct center-of-mass 5s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
90s
SPM preprocessing 1 (estimate 2): 56s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 48s
Update probability maps 10s
98s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 6s
115s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
104s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 20s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 64s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
128s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 40s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 38s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 25s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 134s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 200s
Write results 203s
796s
Quality check 18s
/var/lib/condor/execute/dir_3197796/ds/sub-830976/report/catreport_sub-830976_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 43 second(s).
Image Quality Rating (IQR): 87.39% (B+)
GM volume (GMV): 46.71% (622.21 / 1332.17 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197796/ds/sub-830976/mri
Reports are saved in /var/lib/condor/execute/dir_3197796/ds/sub-830976/report
Labels are saved in /var/lib/condor/execute/dir_3197796/ds/sub-830976/label
------------------------------------------------------------------------
22-Oct-2025 01:12:53 - Done 'CAT12: Segmentation'
22-Oct-2025 01:12:53 - Done
Bye for now...
get(ok): sourcedata/raw/sub-830976/anat/sub-830976_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197796/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197796/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-830976/label/catROI_sub-830976_acq-headmotion1_T1w.mat (file)
add(ok): sub-830976/label/catROI_sub-830976_acq-headmotion1_T1w.xml (file)
add(ok): sub-830976/mri/it_sub-830976_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-830976/mri/it_sub-830976_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-830976/mri/m0wp1sub-830976_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-830976/mri/mwp1sub-830976_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-830976/mri/p0sub-830976_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-830976/mri/t_sub-830976_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-830976/mri/t_sub-830976_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-830976/mri/wp0sub-830976_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-830976/report/cat_sub-830976_acq-headmotion1_T1w.mat (file)
add(ok): sub-830976/report/cat_sub-830976_acq-headmotion1_T1w.xml (file)
add(ok): sub-830976/report/catlog_sub-830976_acq-headmotion1_T1w.txt (file)
add(ok): sub-830976/report/catreport_sub-830976_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:13:49 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:13:50 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197796/ds/sub-830976/sub-830976_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-830976/sub-830976_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 56s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
45s
Correct center-of-mass 5s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
83s
SPM preprocessing 1 (estimate 2): 59s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
96s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 12s
120s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
103s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 20s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 65s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
131s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
13s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 41s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 30s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 22s
ROI estimation of 'mori' atlas 33s
ROI estimation of 'anatomy3' atlas 48s
ROI estimation of 'julichbrain' atlas 64s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 133s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 190s
Write results 196s
722s
Quality check 19s
/var/lib/condor/execute/dir_3197796/ds/sub-830976/report/catreport_sub-830976_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 45 second(s).
Image Quality Rating (IQR): 87.79% (B+)
GM volume (GMV): 49.02% (662.42 / 1351.20 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197796/ds/sub-830976/mri
Reports are saved in /var/lib/condor/execute/dir_3197796/ds/sub-830976/report
Labels are saved in /var/lib/condor/execute/dir_3197796/ds/sub-830976/label
------------------------------------------------------------------------
22-Oct-2025 01:44:37 - Done 'CAT12: Segmentation'
22-Oct-2025 01:44:37 - Done
Bye for now...
get(ok): sourcedata/raw/sub-830976/anat/sub-830976_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-830976/label/catROI_sub-830976_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-830976/mri/it_sub-830976_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-830976/mri/it_sub-830976_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-830976/mri/m0wp1sub-830976_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-830976/mri/mwp1sub-830976_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-830976/mri/p0sub-830976_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-830976/mri/t_sub-830976_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-830976/mri/t_sub-830976_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-830976/mri/wp0sub-830976_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-830976/report/cat_sub-830976_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-830976/report/catreport_sub-830976_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197796/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-830976/label/catROI_sub-830976_acq-standard_T1w.mat (file)
add(ok): sub-830976/label/catROI_sub-830976_acq-standard_T1w.xml (file)
add(ok): sub-830976/mri/it_sub-830976_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-830976/mri/it_sub-830976_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-830976/mri/m0wp1sub-830976_acq-standard_T1w.nii.gz (file)
add(ok): sub-830976/mri/mwp1sub-830976_acq-standard_T1w.nii.gz (file)
add(ok): sub-830976/mri/p0sub-830976_acq-standard_T1w.nii.gz (file)
add(ok): sub-830976/mri/t_sub-830976_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-830976/mri/t_sub-830976_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-830976/mri/wp0sub-830976_acq-standard_T1w.nii.gz (file)
add(ok): sub-830976/report/cat_sub-830976_acq-standard_T1w.mat (file)
add(ok): sub-830976/report/cat_sub-830976_acq-standard_T1w.xml (file)
add(ok): sub-830976/report/catlog_sub-830976_acq-standard_T1w.txt (file)
add(ok): sub-830976/report/catreport_sub-830976_acq-standard_T1w.pdf (file)
add(ok): sub-830976/label/catROI_sub-830976_acq-headmotion1_T1w.mat (file)
add(ok): sub-830976/mri/it_sub-830976_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-830976/mri/it_sub-830976_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-830976/mri/m0wp1sub-830976_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-830976/mri/mwp1sub-830976_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-830976/mri/p0sub-830976_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-830976/mri/t_sub-830976_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-830976/mri/t_sub-830976_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-830976/mri/wp0sub-830976_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-830976/report/cat_sub-830976_acq-headmotion1_T1w.mat (file)
add(ok): sub-830976/report/catreport_sub-830976_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:45:35 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:45:35 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197796/ds/sub-830976/sub-830976_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-830976/sub-830976_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 58s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
48s
Correct center-of-mass 5s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 66s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 9s
95s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
113s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
101s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 19s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 62s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
126s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 41s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 29s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 17s
ROI estimation of 'mori' atlas 22s
ROI estimation of 'anatomy3' atlas 43s
ROI estimation of 'julichbrain' atlas 59s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 52s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 117s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 127s
Write results 129s
589s
Quality check 14s
/var/lib/condor/execute/dir_3197796/ds/sub-830976/report/catreport_sub-830976_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 46 second(s).
Image Quality Rating (IQR): 84.51% (B)
GM volume (GMV): 46.20% (623.25 / 1348.91 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197796/ds/sub-830976/mri
Reports are saved in /var/lib/condor/execute/dir_3197796/ds/sub-830976/report
Labels are saved in /var/lib/condor/execute/dir_3197796/ds/sub-830976/label
------------------------------------------------------------------------
22-Oct-2025 02:13:25 - Done 'CAT12: Segmentation'
22-Oct-2025 02:13:25 - Done
Bye for now...
get(ok): sourcedata/raw/sub-830976/anat/sub-830976_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-830976/label/catROI_sub-830976_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-830976/label/catROI_sub-830976_acq-standard_T1w.mat (file)
unlock(ok): sub-830976/mri/it_sub-830976_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-830976/mri/it_sub-830976_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-830976/mri/it_sub-830976_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-830976/mri/it_sub-830976_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-830976/mri/m0wp1sub-830976_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-830976/mri/m0wp1sub-830976_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-830976/mri/mwp1sub-830976_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-830976/mri/mwp1sub-830976_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-830976/mri/p0sub-830976_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-830976/mri/p0sub-830976_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-830976/mri/t_sub-830976_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-830976/mri/t_sub-830976_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-830976/mri/t_sub-830976_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-830976/mri/t_sub-830976_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-830976/mri/wp0sub-830976_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-830976/mri/wp0sub-830976_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-830976/report/cat_sub-830976_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-830976/report/cat_sub-830976_acq-standard_T1w.mat (file)
unlock(ok): sub-830976/report/catreport_sub-830976_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-830976/report/catreport_sub-830976_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197796/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-830976/label/catROI_sub-830976_acq-headmotion2_T1w.mat (file)
add(ok): sub-830976/label/catROI_sub-830976_acq-headmotion2_T1w.xml (file)
add(ok): sub-830976/mri/it_sub-830976_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-830976/mri/it_sub-830976_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-830976/mri/m0wp1sub-830976_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-830976/mri/mwp1sub-830976_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-830976/mri/p0sub-830976_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-830976/mri/t_sub-830976_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-830976/mri/t_sub-830976_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-830976/mri/wp0sub-830976_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-830976/report/cat_sub-830976_acq-headmotion2_T1w.mat (file)
add(ok): sub-830976/report/cat_sub-830976_acq-headmotion2_T1w.xml (file)
add(ok): sub-830976/report/catlog_sub-830976_acq-headmotion2_T1w.txt (file)
add(ok): sub-830976/report/catreport_sub-830976_acq-headmotion2_T1w.pdf (file)
add(ok): sub-830976/label/catROI_sub-830976_acq-headmotion1_T1w.mat (file)
add(ok): sub-830976/label/catROI_sub-830976_acq-standard_T1w.mat (file)
add(ok): sub-830976/mri/it_sub-830976_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-830976/mri/it_sub-830976_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-830976/mri/it_sub-830976_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-830976/mri/it_sub-830976_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-830976/mri/m0wp1sub-830976_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-830976/mri/m0wp1sub-830976_acq-standard_T1w.nii.gz (file)
add(ok): sub-830976/mri/mwp1sub-830976_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-830976/mri/mwp1sub-830976_acq-standard_T1w.nii.gz (file)
add(ok): sub-830976/mri/p0sub-830976_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-830976/mri/p0sub-830976_acq-standard_T1w.nii.gz (file)
add(ok): sub-830976/mri/t_sub-830976_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-830976/mri/t_sub-830976_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-830976/mri/t_sub-830976_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-830976/mri/t_sub-830976_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-830976/mri/wp0sub-830976_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-830976/mri/wp0sub-830976_acq-standard_T1w.nii.gz (file)
add(ok): sub-830976/report/cat_sub-830976_acq-headmotion1_T1w.mat (file)
add(ok): sub-830976/report/cat_sub-830976_acq-standard_T1w.mat (file)
add(ok): sub-830976/report/catreport_sub-830976_acq-headmotion1_T1w.pdf (file)
add(ok): sub-830976/report/catreport_sub-830976_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-830976/label/catROI_sub-830976_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/label/catROI_sub-830976_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/label/catROI_sub-830976_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/it_sub-830976_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/it_sub-830976_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/it_sub-830976_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/it_sub-830976_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/it_sub-830976_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/it_sub-830976_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/m0wp1sub-830976_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/m0wp1sub-830976_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/m0wp1sub-830976_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/mwp1sub-830976_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/mwp1sub-830976_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/mwp1sub-830976_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/p0sub-830976_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/p0sub-830976_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/p0sub-830976_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/t_sub-830976_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/t_sub-830976_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/t_sub-830976_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/t_sub-830976_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/t_sub-830976_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/t_sub-830976_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/wp0sub-830976_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/wp0sub-830976_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-830976/mri/wp0sub-830976_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-830976/report/cat_sub-830976_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/report/cat_sub-830976_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/report/cat_sub-830976_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-830976/report/catreport_sub-830976_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-830976/report/catreport_sub-830976_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-830976/report/catreport_sub-830976_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000693 seconds
flock: executing git
SUCCESS
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