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ds004173-catqc/logs/10071099.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197696/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197696/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197696/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197696/ds/sub-654601/sub-654601_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-654601/sub-654601_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 60s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 6s
Final scaling 7s
50s
Correct center-of-mass 5s
Affine registration 14s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
92s
SPM preprocessing 1 (estimate 2): 67s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 18s
Update Skull-Stripping 50s
Update probability maps 10s
101s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
117s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.19) 17s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
107s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 20s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.36) 82s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
152s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 37s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.970.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
12s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 19s
ROI estimation of 'neuromorphometrics' atlas 68s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 49s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 44s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 129s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 110s
Write results 112s
768s
Quality check 15s
/var/lib/condor/execute/dir_3197696/ds/sub-654601/report/catreport_sub-654601_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 20 second(s).
Image Quality Rating (IQR): 82.97% (B-)
GM volume (GMV): 41.03% (650.63 / 1585.82 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197696/ds/sub-654601/mri
Reports are saved in /var/lib/condor/execute/dir_3197696/ds/sub-654601/report
Labels are saved in /var/lib/condor/execute/dir_3197696/ds/sub-654601/label
------------------------------------------------------------------------
22-Oct-2025 01:14:30 - Done 'CAT12: Segmentation'
22-Oct-2025 01:14:30 - Done
Bye for now...
get(ok): sourcedata/raw/sub-654601/anat/sub-654601_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197696/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197696/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-654601/label/catROI_sub-654601_acq-headmotion1_T1w.mat (file)
add(ok): sub-654601/label/catROI_sub-654601_acq-headmotion1_T1w.xml (file)
add(ok): sub-654601/mri/it_sub-654601_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-654601/mri/it_sub-654601_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-654601/mri/m0wp1sub-654601_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-654601/mri/mwp1sub-654601_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-654601/mri/p0sub-654601_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-654601/mri/t_sub-654601_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-654601/mri/t_sub-654601_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-654601/mri/wp0sub-654601_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-654601/report/cat_sub-654601_acq-headmotion1_T1w.mat (file)
add(ok): sub-654601/report/cat_sub-654601_acq-headmotion1_T1w.xml (file)
add(ok): sub-654601/report/catlog_sub-654601_acq-headmotion1_T1w.txt (file)
add(ok): sub-654601/report/catreport_sub-654601_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:15:16 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:15:16 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197696/ds/sub-654601/sub-654601_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-654601/sub-654601_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 66s
Affine preprocessing (APP)
Initialize 8s
Estimate background 9s
Initial correction 8s
Refine background 4s
Final correction 7s
Final scaling 8s
51s
Correct center-of-mass 5s
Affine registration 12s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
86s
SPM preprocessing 1 (estimate 2): 74s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 50s
Update probability maps 13s
104s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 12s
120s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.31) 17s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
110s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 16s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.36) 66s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
133s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 37s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.970.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
10s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 19s
ROI estimation of 'neuromorphometrics' atlas 69s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 50s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 63s
ROI estimation of 'julichbrain' atlas 74s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 69s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 80s
Write results 82s
642s
Quality check 16s
/var/lib/condor/execute/dir_3197696/ds/sub-654601/report/catreport_sub-654601_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 32 minute(s) and 27 second(s).
Image Quality Rating (IQR): 81.55% (B-)
GM volume (GMV): 40.03% (642.63 / 1605.52 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197696/ds/sub-654601/mri
Reports are saved in /var/lib/condor/execute/dir_3197696/ds/sub-654601/report
Labels are saved in /var/lib/condor/execute/dir_3197696/ds/sub-654601/label
------------------------------------------------------------------------
22-Oct-2025 01:47:46 - Done 'CAT12: Segmentation'
22-Oct-2025 01:47:46 - Done
Bye for now...
get(ok): sourcedata/raw/sub-654601/anat/sub-654601_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-654601/label/catROI_sub-654601_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-654601/mri/it_sub-654601_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-654601/mri/it_sub-654601_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-654601/mri/m0wp1sub-654601_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-654601/mri/mwp1sub-654601_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-654601/mri/p0sub-654601_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-654601/mri/t_sub-654601_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-654601/mri/t_sub-654601_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-654601/mri/wp0sub-654601_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-654601/report/cat_sub-654601_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-654601/report/catreport_sub-654601_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197696/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-654601/label/catROI_sub-654601_acq-headmotion2_T1w.mat (file)
add(ok): sub-654601/label/catROI_sub-654601_acq-headmotion2_T1w.xml (file)
add(ok): sub-654601/mri/it_sub-654601_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-654601/mri/it_sub-654601_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-654601/mri/m0wp1sub-654601_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-654601/mri/mwp1sub-654601_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-654601/mri/p0sub-654601_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-654601/mri/t_sub-654601_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-654601/mri/t_sub-654601_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-654601/mri/wp0sub-654601_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-654601/report/cat_sub-654601_acq-headmotion2_T1w.mat (file)
add(ok): sub-654601/report/cat_sub-654601_acq-headmotion2_T1w.xml (file)
add(ok): sub-654601/report/catlog_sub-654601_acq-headmotion2_T1w.txt (file)
add(ok): sub-654601/report/catreport_sub-654601_acq-headmotion2_T1w.pdf (file)
add(ok): sub-654601/label/catROI_sub-654601_acq-headmotion1_T1w.mat (file)
add(ok): sub-654601/mri/it_sub-654601_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-654601/mri/it_sub-654601_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-654601/mri/m0wp1sub-654601_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-654601/mri/mwp1sub-654601_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-654601/mri/p0sub-654601_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-654601/mri/t_sub-654601_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-654601/mri/t_sub-654601_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-654601/mri/wp0sub-654601_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-654601/report/cat_sub-654601_acq-headmotion1_T1w.mat (file)
add(ok): sub-654601/report/catreport_sub-654601_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:48:33 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:48:33 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197696/ds/sub-654601/sub-654601_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-654601/sub-654601_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 64s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 4s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
85s
SPM preprocessing 1 (estimate 2): 64s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 48s
Update probability maps 9s
99s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 12s
116s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 17s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
110s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 21s
Ventricle detection 21s
Blood vessel detection 12s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.38) 94s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 6s
Final corrections 3s
168s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 6s
Level 1 cleanup (brain masking) 5s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 4s
16s
15s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 18s
ROI estimation of 'neuromorphometrics' atlas 61s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 39s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 21s
ROI estimation of 'anatomy3' atlas 25s
ROI estimation of 'julichbrain' atlas 31s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 56s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 72s
Write results 73s
423s
Quality check 14s
/var/lib/condor/execute/dir_3197696/ds/sub-654601/report/catreport_sub-654601_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 44 second(s).
Image Quality Rating (IQR): 87.77% (B+)
GM volume (GMV): 41.94% (678.98 / 1618.78 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197696/ds/sub-654601/mri
Reports are saved in /var/lib/condor/execute/dir_3197696/ds/sub-654601/report
Labels are saved in /var/lib/condor/execute/dir_3197696/ds/sub-654601/label
------------------------------------------------------------------------
22-Oct-2025 02:17:20 - Done 'CAT12: Segmentation'
22-Oct-2025 02:17:20 - Done
Bye for now...
get(ok): sourcedata/raw/sub-654601/anat/sub-654601_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-654601/label/catROI_sub-654601_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-654601/label/catROI_sub-654601_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-654601/mri/it_sub-654601_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-654601/mri/it_sub-654601_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-654601/mri/it_sub-654601_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-654601/mri/it_sub-654601_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-654601/mri/m0wp1sub-654601_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-654601/mri/m0wp1sub-654601_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-654601/mri/mwp1sub-654601_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-654601/mri/mwp1sub-654601_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-654601/mri/p0sub-654601_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-654601/mri/p0sub-654601_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-654601/mri/t_sub-654601_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-654601/mri/t_sub-654601_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-654601/mri/t_sub-654601_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-654601/mri/t_sub-654601_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-654601/mri/wp0sub-654601_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-654601/mri/wp0sub-654601_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-654601/report/cat_sub-654601_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-654601/report/cat_sub-654601_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-654601/report/catreport_sub-654601_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-654601/report/catreport_sub-654601_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197696/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-654601/label/catROI_sub-654601_acq-standard_T1w.mat (file)
add(ok): sub-654601/label/catROI_sub-654601_acq-standard_T1w.xml (file)
add(ok): sub-654601/mri/it_sub-654601_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-654601/mri/it_sub-654601_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-654601/mri/m0wp1sub-654601_acq-standard_T1w.nii.gz (file)
add(ok): sub-654601/mri/mwp1sub-654601_acq-standard_T1w.nii.gz (file)
add(ok): sub-654601/mri/p0sub-654601_acq-standard_T1w.nii.gz (file)
add(ok): sub-654601/mri/t_sub-654601_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-654601/mri/t_sub-654601_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-654601/mri/wp0sub-654601_acq-standard_T1w.nii.gz (file)
add(ok): sub-654601/report/cat_sub-654601_acq-standard_T1w.mat (file)
add(ok): sub-654601/report/cat_sub-654601_acq-standard_T1w.xml (file)
add(ok): sub-654601/report/catlog_sub-654601_acq-standard_T1w.txt (file)
add(ok): sub-654601/report/catreport_sub-654601_acq-standard_T1w.pdf (file)
add(ok): sub-654601/label/catROI_sub-654601_acq-headmotion1_T1w.mat (file)
add(ok): sub-654601/label/catROI_sub-654601_acq-headmotion2_T1w.mat (file)
add(ok): sub-654601/mri/it_sub-654601_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-654601/mri/it_sub-654601_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-654601/mri/it_sub-654601_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-654601/mri/it_sub-654601_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-654601/mri/m0wp1sub-654601_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-654601/mri/m0wp1sub-654601_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-654601/mri/mwp1sub-654601_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-654601/mri/mwp1sub-654601_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-654601/mri/p0sub-654601_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-654601/mri/p0sub-654601_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-654601/mri/t_sub-654601_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-654601/mri/t_sub-654601_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-654601/mri/t_sub-654601_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-654601/mri/t_sub-654601_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-654601/mri/wp0sub-654601_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-654601/mri/wp0sub-654601_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-654601/report/cat_sub-654601_acq-headmotion1_T1w.mat (file)
add(ok): sub-654601/report/cat_sub-654601_acq-headmotion2_T1w.mat (file)
add(ok): sub-654601/report/catreport_sub-654601_acq-headmotion1_T1w.pdf (file)
add(ok): sub-654601/report/catreport_sub-654601_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-654601/label/catROI_sub-654601_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/label/catROI_sub-654601_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/label/catROI_sub-654601_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/it_sub-654601_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/it_sub-654601_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/it_sub-654601_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/it_sub-654601_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/it_sub-654601_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/it_sub-654601_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/m0wp1sub-654601_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/m0wp1sub-654601_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/m0wp1sub-654601_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/mwp1sub-654601_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/mwp1sub-654601_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/mwp1sub-654601_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/p0sub-654601_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/p0sub-654601_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/p0sub-654601_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/t_sub-654601_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/t_sub-654601_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/t_sub-654601_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/t_sub-654601_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/t_sub-654601_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/t_sub-654601_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/wp0sub-654601_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/wp0sub-654601_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-654601/mri/wp0sub-654601_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-654601/report/cat_sub-654601_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/report/cat_sub-654601_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/report/cat_sub-654601_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-654601/report/catreport_sub-654601_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-654601/report/catreport_sub-654601_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-654601/report/catreport_sub-654601_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000033 seconds
flock: executing git
SUCCESS
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