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ds004173-catqc/logs/10071098.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197581/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197581/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197581/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197581/ds/sub-517724/sub-517724_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-517724/sub-517724_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 71s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 6s
Final scaling 8s
51s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
94s
SPM preprocessing 1 (estimate 2): 61s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 50s
Update probability maps 10s
102s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 9s
119s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
109s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 19s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 79s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
147s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 15s
ROI estimation of 'neuromorphometrics' atlas 55s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 49s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 19s
ROI estimation of 'aal3' atlas 30s
ROI estimation of 'mori' atlas 44s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 135s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 169s
Write results 171s
811s
Quality check 16s
/var/lib/condor/execute/dir_3197581/ds/sub-517724/report/catreport_sub-517724_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 32 minute(s) and 39 second(s).
Image Quality Rating (IQR): 86.92% (B+)
GM volume (GMV): 44.15% (674.01 / 1526.48 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197581/ds/sub-517724/mri
Reports are saved in /var/lib/condor/execute/dir_3197581/ds/sub-517724/report
Labels are saved in /var/lib/condor/execute/dir_3197581/ds/sub-517724/label
------------------------------------------------------------------------
22-Oct-2025 01:13:49 - Done 'CAT12: Segmentation'
22-Oct-2025 01:13:49 - Done
Bye for now...
get(ok): sourcedata/raw/sub-517724/anat/sub-517724_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197581/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197581/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-517724/label/catROI_sub-517724_acq-headmotion1_T1w.mat (file)
add(ok): sub-517724/label/catROI_sub-517724_acq-headmotion1_T1w.xml (file)
add(ok): sub-517724/mri/it_sub-517724_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-517724/mri/it_sub-517724_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-517724/mri/m0wp1sub-517724_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-517724/mri/mwp1sub-517724_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-517724/mri/p0sub-517724_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-517724/mri/t_sub-517724_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-517724/mri/t_sub-517724_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-517724/mri/wp0sub-517724_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-517724/report/cat_sub-517724_acq-headmotion1_T1w.mat (file)
add(ok): sub-517724/report/cat_sub-517724_acq-headmotion1_T1w.xml (file)
add(ok): sub-517724/report/catlog_sub-517724_acq-headmotion1_T1w.txt (file)
add(ok): sub-517724/report/catreport_sub-517724_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:14:36 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:14:36 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197581/ds/sub-517724/sub-517724_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-517724/sub-517724_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 72s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 6s
Final scaling 8s
49s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
87s
SPM preprocessing 1 (estimate 2): 68s
SPM preprocessing 2 (write)
Write Segmentation 25s
Update Segmentation 17s
Update Skull-Stripping 50s
Update probability maps 10s
102s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 8s
115s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 17s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 34s
111s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 20s
Ventricle detection 19s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.09) 87s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
156s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 38s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
3s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 57s
ROI estimation of 'lpba40' atlas 16s
ROI estimation of 'hammers' atlas 41s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 22s
ROI estimation of 'mori' atlas 42s
ROI estimation of 'anatomy3' atlas 64s
ROI estimation of 'julichbrain' atlas 84s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 127s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 118s
Write results 120s
732s
Quality check 16s
/var/lib/condor/execute/dir_3197581/ds/sub-517724/report/catreport_sub-517724_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 31 second(s).
Image Quality Rating (IQR): 85.59% (B)
GM volume (GMV): 43.84% (679.25 / 1549.40 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197581/ds/sub-517724/mri
Reports are saved in /var/lib/condor/execute/dir_3197581/ds/sub-517724/report
Labels are saved in /var/lib/condor/execute/dir_3197581/ds/sub-517724/label
------------------------------------------------------------------------
22-Oct-2025 01:46:10 - Done 'CAT12: Segmentation'
22-Oct-2025 01:46:10 - Done
Bye for now...
get(ok): sourcedata/raw/sub-517724/anat/sub-517724_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-517724/label/catROI_sub-517724_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-517724/mri/it_sub-517724_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-517724/mri/it_sub-517724_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-517724/mri/m0wp1sub-517724_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-517724/mri/mwp1sub-517724_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-517724/mri/p0sub-517724_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-517724/mri/t_sub-517724_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-517724/mri/t_sub-517724_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-517724/mri/wp0sub-517724_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-517724/report/cat_sub-517724_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-517724/report/catreport_sub-517724_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197581/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-517724/label/catROI_sub-517724_acq-headmotion2_T1w.mat (file)
add(ok): sub-517724/label/catROI_sub-517724_acq-headmotion2_T1w.xml (file)
add(ok): sub-517724/mri/it_sub-517724_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-517724/mri/it_sub-517724_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-517724/mri/m0wp1sub-517724_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-517724/mri/mwp1sub-517724_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-517724/mri/p0sub-517724_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-517724/mri/t_sub-517724_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-517724/mri/t_sub-517724_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-517724/mri/wp0sub-517724_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-517724/report/cat_sub-517724_acq-headmotion2_T1w.mat (file)
add(ok): sub-517724/report/cat_sub-517724_acq-headmotion2_T1w.xml (file)
add(ok): sub-517724/report/catlog_sub-517724_acq-headmotion2_T1w.txt (file)
add(ok): sub-517724/report/catreport_sub-517724_acq-headmotion2_T1w.pdf (file)
add(ok): sub-517724/label/catROI_sub-517724_acq-headmotion1_T1w.mat (file)
add(ok): sub-517724/mri/it_sub-517724_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-517724/mri/it_sub-517724_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-517724/mri/m0wp1sub-517724_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-517724/mri/mwp1sub-517724_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-517724/mri/p0sub-517724_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-517724/mri/t_sub-517724_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-517724/mri/t_sub-517724_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-517724/mri/wp0sub-517724_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-517724/report/cat_sub-517724_acq-headmotion1_T1w.mat (file)
add(ok): sub-517724/report/catreport_sub-517724_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:47:02 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:47:02 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197581/ds/sub-517724/sub-517724_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-517724/sub-517724_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 73s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
82s
SPM preprocessing 1 (estimate 2): 57s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 17s
Update Skull-Stripping 48s
Update probability maps 10s
97s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 7s
112s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 17s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
108s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 20s
Ventricle detection 20s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 92s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
163s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
11s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 51s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 38s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 24s
ROI estimation of 'mori' atlas 34s
ROI estimation of 'anatomy3' atlas 51s
ROI estimation of 'julichbrain' atlas 72s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 41s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 63s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 75s
Write results 77s
548s
Quality check 14s
/var/lib/condor/execute/dir_3197581/ds/sub-517724/report/catreport_sub-517724_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 19 second(s).
Image Quality Rating (IQR): 87.92% (B+)
GM volume (GMV): 44.43% (695.34 / 1565.03 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197581/ds/sub-517724/mri
Reports are saved in /var/lib/condor/execute/dir_3197581/ds/sub-517724/report
Labels are saved in /var/lib/condor/execute/dir_3197581/ds/sub-517724/label
------------------------------------------------------------------------
22-Oct-2025 02:15:24 - Done 'CAT12: Segmentation'
22-Oct-2025 02:15:24 - Done
Bye for now...
get(ok): sourcedata/raw/sub-517724/anat/sub-517724_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-517724/label/catROI_sub-517724_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-517724/label/catROI_sub-517724_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-517724/mri/it_sub-517724_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-517724/mri/it_sub-517724_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-517724/mri/it_sub-517724_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-517724/mri/it_sub-517724_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-517724/mri/m0wp1sub-517724_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-517724/mri/m0wp1sub-517724_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-517724/mri/mwp1sub-517724_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-517724/mri/mwp1sub-517724_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-517724/mri/p0sub-517724_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-517724/mri/p0sub-517724_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-517724/mri/t_sub-517724_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-517724/mri/t_sub-517724_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-517724/mri/t_sub-517724_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-517724/mri/t_sub-517724_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-517724/mri/wp0sub-517724_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-517724/mri/wp0sub-517724_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-517724/report/cat_sub-517724_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-517724/report/cat_sub-517724_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-517724/report/catreport_sub-517724_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-517724/report/catreport_sub-517724_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197581/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-517724/label/catROI_sub-517724_acq-standard_T1w.mat (file)
add(ok): sub-517724/label/catROI_sub-517724_acq-standard_T1w.xml (file)
add(ok): sub-517724/mri/it_sub-517724_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-517724/mri/it_sub-517724_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-517724/mri/m0wp1sub-517724_acq-standard_T1w.nii.gz (file)
add(ok): sub-517724/mri/mwp1sub-517724_acq-standard_T1w.nii.gz (file)
add(ok): sub-517724/mri/p0sub-517724_acq-standard_T1w.nii.gz (file)
add(ok): sub-517724/mri/t_sub-517724_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-517724/mri/t_sub-517724_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-517724/mri/wp0sub-517724_acq-standard_T1w.nii.gz (file)
add(ok): sub-517724/report/cat_sub-517724_acq-standard_T1w.mat (file)
add(ok): sub-517724/report/cat_sub-517724_acq-standard_T1w.xml (file)
add(ok): sub-517724/report/catlog_sub-517724_acq-standard_T1w.txt (file)
add(ok): sub-517724/report/catreport_sub-517724_acq-standard_T1w.pdf (file)
add(ok): sub-517724/label/catROI_sub-517724_acq-headmotion1_T1w.mat (file)
add(ok): sub-517724/label/catROI_sub-517724_acq-headmotion2_T1w.mat (file)
add(ok): sub-517724/mri/it_sub-517724_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-517724/mri/it_sub-517724_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-517724/mri/it_sub-517724_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-517724/mri/it_sub-517724_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-517724/mri/m0wp1sub-517724_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-517724/mri/m0wp1sub-517724_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-517724/mri/mwp1sub-517724_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-517724/mri/mwp1sub-517724_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-517724/mri/p0sub-517724_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-517724/mri/p0sub-517724_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-517724/mri/t_sub-517724_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-517724/mri/t_sub-517724_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-517724/mri/t_sub-517724_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-517724/mri/t_sub-517724_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-517724/mri/wp0sub-517724_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-517724/mri/wp0sub-517724_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-517724/report/cat_sub-517724_acq-headmotion1_T1w.mat (file)
add(ok): sub-517724/report/cat_sub-517724_acq-headmotion2_T1w.mat (file)
add(ok): sub-517724/report/catreport_sub-517724_acq-headmotion1_T1w.pdf (file)
add(ok): sub-517724/report/catreport_sub-517724_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-517724/label/catROI_sub-517724_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/label/catROI_sub-517724_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/label/catROI_sub-517724_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/it_sub-517724_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/it_sub-517724_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/it_sub-517724_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/it_sub-517724_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/it_sub-517724_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/it_sub-517724_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/m0wp1sub-517724_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/m0wp1sub-517724_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/m0wp1sub-517724_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/mwp1sub-517724_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/mwp1sub-517724_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/mwp1sub-517724_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/p0sub-517724_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/p0sub-517724_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/p0sub-517724_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/t_sub-517724_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/t_sub-517724_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/t_sub-517724_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/t_sub-517724_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/t_sub-517724_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/t_sub-517724_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/wp0sub-517724_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/wp0sub-517724_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-517724/mri/wp0sub-517724_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-517724/report/cat_sub-517724_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/report/cat_sub-517724_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/report/cat_sub-517724_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-517724/report/catreport_sub-517724_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-517724/report/catreport_sub-517724_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-517724/report/catreport_sub-517724_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000344 seconds
flock: executing git
SUCCESS
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