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ds004173-catqc/logs/10071097.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197579/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197579/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197579/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197579/ds/sub-754183/sub-754183_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-754183/sub-754183_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 71s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 8s
49s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
83s
SPM preprocessing 1 (estimate 2): 78s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 46s
Update probability maps 10s
95s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 11s
119s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.04) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
100s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 18s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 60s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
119s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 38s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 45s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 42s
ROI estimation of 'anatomy3' atlas 61s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 66s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 132s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 196s
Write results 200s
799s
Quality check 16s
/var/lib/condor/execute/dir_3197579/ds/sub-754183/report/catreport_sub-754183_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 48 second(s).
Image Quality Rating (IQR): 86.72% (B+)
GM volume (GMV): 45.61% (566.25 / 1241.45 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197579/ds/sub-754183/mri
Reports are saved in /var/lib/condor/execute/dir_3197579/ds/sub-754183/report
Labels are saved in /var/lib/condor/execute/dir_3197579/ds/sub-754183/label
------------------------------------------------------------------------
22-Oct-2025 01:12:59 - Done 'CAT12: Segmentation'
22-Oct-2025 01:12:59 - Done
Bye for now...
get(ok): sourcedata/raw/sub-754183/anat/sub-754183_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197579/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197579/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-754183/label/catROI_sub-754183_acq-headmotion2_T1w.mat (file)
add(ok): sub-754183/label/catROI_sub-754183_acq-headmotion2_T1w.xml (file)
add(ok): sub-754183/mri/it_sub-754183_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-754183/mri/it_sub-754183_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-754183/mri/m0wp1sub-754183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754183/mri/mwp1sub-754183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754183/mri/p0sub-754183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754183/mri/t_sub-754183_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-754183/mri/t_sub-754183_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-754183/mri/wp0sub-754183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754183/report/cat_sub-754183_acq-headmotion2_T1w.mat (file)
add(ok): sub-754183/report/cat_sub-754183_acq-headmotion2_T1w.xml (file)
add(ok): sub-754183/report/catlog_sub-754183_acq-headmotion2_T1w.txt (file)
add(ok): sub-754183/report/catreport_sub-754183_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:13:48 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:13:48 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197579/ds/sub-754183/sub-754183_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-754183/sub-754183_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 72s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
46s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 68s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 46s
Update probability maps 10s
95s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 5s
113s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.03) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
103s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 17s
Ventricle detection 20s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 71s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
134s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
6s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 37s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 30s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 24s
ROI estimation of 'mori' atlas 40s
ROI estimation of 'anatomy3' atlas 60s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 133s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 178s
Write results 181s
751s
Quality check 16s
/var/lib/condor/execute/dir_3197579/ds/sub-754183/report/catreport_sub-754183_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 46 second(s).
Image Quality Rating (IQR): 87.96% (B+)
GM volume (GMV): 47.37% (591.09 / 1247.75 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197579/ds/sub-754183/mri
Reports are saved in /var/lib/condor/execute/dir_3197579/ds/sub-754183/report
Labels are saved in /var/lib/condor/execute/dir_3197579/ds/sub-754183/label
------------------------------------------------------------------------
22-Oct-2025 01:44:37 - Done 'CAT12: Segmentation'
22-Oct-2025 01:44:37 - Done
Bye for now...
get(ok): sourcedata/raw/sub-754183/anat/sub-754183_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-754183/label/catROI_sub-754183_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-754183/mri/it_sub-754183_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-754183/mri/it_sub-754183_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-754183/mri/m0wp1sub-754183_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-754183/mri/mwp1sub-754183_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-754183/mri/p0sub-754183_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-754183/mri/t_sub-754183_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-754183/mri/t_sub-754183_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-754183/mri/wp0sub-754183_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-754183/report/cat_sub-754183_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-754183/report/catreport_sub-754183_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197579/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-754183/label/catROI_sub-754183_acq-standard_T1w.mat (file)
add(ok): sub-754183/label/catROI_sub-754183_acq-standard_T1w.xml (file)
add(ok): sub-754183/mri/it_sub-754183_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-754183/mri/it_sub-754183_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-754183/mri/m0wp1sub-754183_acq-standard_T1w.nii.gz (file)
add(ok): sub-754183/mri/mwp1sub-754183_acq-standard_T1w.nii.gz (file)
add(ok): sub-754183/mri/p0sub-754183_acq-standard_T1w.nii.gz (file)
add(ok): sub-754183/mri/t_sub-754183_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-754183/mri/t_sub-754183_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-754183/mri/wp0sub-754183_acq-standard_T1w.nii.gz (file)
add(ok): sub-754183/report/cat_sub-754183_acq-standard_T1w.mat (file)
add(ok): sub-754183/report/cat_sub-754183_acq-standard_T1w.xml (file)
add(ok): sub-754183/report/catlog_sub-754183_acq-standard_T1w.txt (file)
add(ok): sub-754183/report/catreport_sub-754183_acq-standard_T1w.pdf (file)
add(ok): sub-754183/label/catROI_sub-754183_acq-headmotion2_T1w.mat (file)
add(ok): sub-754183/mri/it_sub-754183_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-754183/mri/it_sub-754183_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-754183/mri/m0wp1sub-754183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754183/mri/mwp1sub-754183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754183/mri/p0sub-754183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754183/mri/t_sub-754183_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-754183/mri/t_sub-754183_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-754183/mri/wp0sub-754183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754183/report/cat_sub-754183_acq-headmotion2_T1w.mat (file)
add(ok): sub-754183/report/catreport_sub-754183_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:45:32 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:45:32 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197579/ds/sub-754183/sub-754183_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-754183/sub-754183_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 69s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
79s
SPM preprocessing 1 (estimate 2): 74s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 15s
Update Skull-Stripping 45s
Update probability maps 9s
92s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 7s
111s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
96s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 17s
Ventricle detection 16s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 58s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
116s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 34s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 24s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 18s
ROI estimation of 'mori' atlas 25s
ROI estimation of 'anatomy3' atlas 36s
ROI estimation of 'julichbrain' atlas 50s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 44s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 100s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 134s
Write results 136s
539s
Quality check 14s
/var/lib/condor/execute/dir_3197579/ds/sub-754183/report/catreport_sub-754183_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 13 second(s).
Image Quality Rating (IQR): 87.40% (B+)
GM volume (GMV): 46.36% (576.01 / 1242.51 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197579/ds/sub-754183/mri
Reports are saved in /var/lib/condor/execute/dir_3197579/ds/sub-754183/report
Labels are saved in /var/lib/condor/execute/dir_3197579/ds/sub-754183/label
------------------------------------------------------------------------
22-Oct-2025 02:11:49 - Done 'CAT12: Segmentation'
22-Oct-2025 02:11:49 - Done
Bye for now...
get(ok): sourcedata/raw/sub-754183/anat/sub-754183_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-754183/label/catROI_sub-754183_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-754183/label/catROI_sub-754183_acq-standard_T1w.mat (file)
unlock(ok): sub-754183/mri/it_sub-754183_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-754183/mri/it_sub-754183_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-754183/mri/it_sub-754183_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-754183/mri/it_sub-754183_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-754183/mri/m0wp1sub-754183_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-754183/mri/m0wp1sub-754183_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-754183/mri/mwp1sub-754183_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-754183/mri/mwp1sub-754183_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-754183/mri/p0sub-754183_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-754183/mri/p0sub-754183_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-754183/mri/t_sub-754183_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-754183/mri/t_sub-754183_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-754183/mri/t_sub-754183_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-754183/mri/t_sub-754183_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-754183/mri/wp0sub-754183_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-754183/mri/wp0sub-754183_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-754183/report/cat_sub-754183_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-754183/report/cat_sub-754183_acq-standard_T1w.mat (file)
unlock(ok): sub-754183/report/catreport_sub-754183_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-754183/report/catreport_sub-754183_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197579/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-754183/label/catROI_sub-754183_acq-headmotion1_T1w.mat (file)
add(ok): sub-754183/label/catROI_sub-754183_acq-headmotion1_T1w.xml (file)
add(ok): sub-754183/mri/it_sub-754183_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-754183/mri/it_sub-754183_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-754183/mri/m0wp1sub-754183_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754183/mri/mwp1sub-754183_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754183/mri/p0sub-754183_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754183/mri/t_sub-754183_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-754183/mri/t_sub-754183_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-754183/mri/wp0sub-754183_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-754183/report/cat_sub-754183_acq-headmotion1_T1w.mat (file)
add(ok): sub-754183/report/cat_sub-754183_acq-headmotion1_T1w.xml (file)
add(ok): sub-754183/report/catlog_sub-754183_acq-headmotion1_T1w.txt (file)
add(ok): sub-754183/report/catreport_sub-754183_acq-headmotion1_T1w.pdf (file)
add(ok): sub-754183/label/catROI_sub-754183_acq-headmotion2_T1w.mat (file)
add(ok): sub-754183/label/catROI_sub-754183_acq-standard_T1w.mat (file)
add(ok): sub-754183/mri/it_sub-754183_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-754183/mri/it_sub-754183_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-754183/mri/it_sub-754183_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-754183/mri/it_sub-754183_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-754183/mri/m0wp1sub-754183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754183/mri/m0wp1sub-754183_acq-standard_T1w.nii.gz (file)
add(ok): sub-754183/mri/mwp1sub-754183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754183/mri/mwp1sub-754183_acq-standard_T1w.nii.gz (file)
add(ok): sub-754183/mri/p0sub-754183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754183/mri/p0sub-754183_acq-standard_T1w.nii.gz (file)
add(ok): sub-754183/mri/t_sub-754183_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-754183/mri/t_sub-754183_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-754183/mri/t_sub-754183_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-754183/mri/t_sub-754183_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-754183/mri/wp0sub-754183_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-754183/mri/wp0sub-754183_acq-standard_T1w.nii.gz (file)
add(ok): sub-754183/report/cat_sub-754183_acq-headmotion2_T1w.mat (file)
add(ok): sub-754183/report/cat_sub-754183_acq-standard_T1w.mat (file)
add(ok): sub-754183/report/catreport_sub-754183_acq-headmotion2_T1w.pdf (file)
add(ok): sub-754183/report/catreport_sub-754183_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-754183/label/catROI_sub-754183_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/label/catROI_sub-754183_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/label/catROI_sub-754183_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/it_sub-754183_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/it_sub-754183_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/it_sub-754183_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/it_sub-754183_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/it_sub-754183_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/it_sub-754183_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/m0wp1sub-754183_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/m0wp1sub-754183_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/m0wp1sub-754183_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/mwp1sub-754183_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/mwp1sub-754183_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/mwp1sub-754183_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/p0sub-754183_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/p0sub-754183_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/p0sub-754183_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/t_sub-754183_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/t_sub-754183_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/t_sub-754183_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/t_sub-754183_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/t_sub-754183_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/t_sub-754183_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/wp0sub-754183_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/wp0sub-754183_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754183/mri/wp0sub-754183_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-754183/report/cat_sub-754183_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/report/cat_sub-754183_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/report/cat_sub-754183_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-754183/report/catreport_sub-754183_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-754183/report/catreport_sub-754183_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-754183/report/catreport_sub-754183_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001374 seconds
flock: executing git
SUCCESS
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