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ds004173-catqc/logs/10071095.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197544/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197544/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197544/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197544/ds/sub-195765/sub-195765_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-195765/sub-195765_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 51s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 5s
Final correction 6s
Final scaling 6s
46s
Correct center-of-mass 4s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
83s
SPM preprocessing 1 (estimate 2): 67s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 15s
Update Skull-Stripping 46s
Update probability maps 10s
94s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 11s
117s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
97s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 15s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 60s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
116s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 37s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 36s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 28s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 84s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 140s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 206s
Write results 211s
814s
Quality check 17s
/var/lib/condor/execute/dir_3197544/ds/sub-195765/report/catreport_sub-195765_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 34 second(s).
Image Quality Rating (IQR): 87.10% (B+)
GM volume (GMV): 46.10% (546.54 / 1185.66 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197544/ds/sub-195765/mri
Reports are saved in /var/lib/condor/execute/dir_3197544/ds/sub-195765/report
Labels are saved in /var/lib/condor/execute/dir_3197544/ds/sub-195765/label
------------------------------------------------------------------------
22-Oct-2025 01:12:44 - Done 'CAT12: Segmentation'
22-Oct-2025 01:12:44 - Done
Bye for now...
get(ok): sourcedata/raw/sub-195765/anat/sub-195765_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197544/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197544/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-195765/label/catROI_sub-195765_acq-headmotion1_T1w.mat (file)
add(ok): sub-195765/label/catROI_sub-195765_acq-headmotion1_T1w.xml (file)
add(ok): sub-195765/mri/it_sub-195765_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-195765/mri/it_sub-195765_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-195765/mri/m0wp1sub-195765_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-195765/mri/mwp1sub-195765_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-195765/mri/p0sub-195765_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-195765/mri/t_sub-195765_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-195765/mri/t_sub-195765_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-195765/mri/wp0sub-195765_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-195765/report/cat_sub-195765_acq-headmotion1_T1w.mat (file)
add(ok): sub-195765/report/cat_sub-195765_acq-headmotion1_T1w.xml (file)
add(ok): sub-195765/report/catlog_sub-195765_acq-headmotion1_T1w.txt (file)
add(ok): sub-195765/report/catreport_sub-195765_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:13:37 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:13:38 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197544/ds/sub-195765/sub-195765_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-195765/sub-195765_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 52s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
44s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 15s
Update Skull-Stripping 46s
Update probability maps 9s
94s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 11s
119s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
96s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 17s
Ventricle detection 15s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 74s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
131s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 24s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 24s
ROI estimation of 'anatomy3' atlas 40s
ROI estimation of 'julichbrain' atlas 72s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 133s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 202s
Write results 207s
696s
Quality check 17s
/var/lib/condor/execute/dir_3197544/ds/sub-195765/report/catreport_sub-195765_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 29 minute(s) and 7 second(s).
Image Quality Rating (IQR): 85.89% (B)
GM volume (GMV): 46.85% (564.90 / 1205.85 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197544/ds/sub-195765/mri
Reports are saved in /var/lib/condor/execute/dir_3197544/ds/sub-195765/report
Labels are saved in /var/lib/condor/execute/dir_3197544/ds/sub-195765/label
------------------------------------------------------------------------
22-Oct-2025 01:42:48 - Done 'CAT12: Segmentation'
22-Oct-2025 01:42:48 - Done
Bye for now...
get(ok): sourcedata/raw/sub-195765/anat/sub-195765_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-195765/label/catROI_sub-195765_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-195765/mri/it_sub-195765_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-195765/mri/it_sub-195765_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-195765/mri/m0wp1sub-195765_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-195765/mri/mwp1sub-195765_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-195765/mri/p0sub-195765_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-195765/mri/t_sub-195765_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-195765/mri/t_sub-195765_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-195765/mri/wp0sub-195765_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-195765/report/cat_sub-195765_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-195765/report/catreport_sub-195765_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197544/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-195765/label/catROI_sub-195765_acq-standard_T1w.mat (file)
add(ok): sub-195765/label/catROI_sub-195765_acq-standard_T1w.xml (file)
add(ok): sub-195765/mri/it_sub-195765_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-195765/mri/it_sub-195765_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-195765/mri/m0wp1sub-195765_acq-standard_T1w.nii.gz (file)
add(ok): sub-195765/mri/mwp1sub-195765_acq-standard_T1w.nii.gz (file)
add(ok): sub-195765/mri/p0sub-195765_acq-standard_T1w.nii.gz (file)
add(ok): sub-195765/mri/t_sub-195765_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-195765/mri/t_sub-195765_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-195765/mri/wp0sub-195765_acq-standard_T1w.nii.gz (file)
add(ok): sub-195765/report/cat_sub-195765_acq-standard_T1w.mat (file)
add(ok): sub-195765/report/cat_sub-195765_acq-standard_T1w.xml (file)
add(ok): sub-195765/report/catlog_sub-195765_acq-standard_T1w.txt (file)
add(ok): sub-195765/report/catreport_sub-195765_acq-standard_T1w.pdf (file)
add(ok): sub-195765/label/catROI_sub-195765_acq-headmotion1_T1w.mat (file)
add(ok): sub-195765/mri/it_sub-195765_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-195765/mri/it_sub-195765_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-195765/mri/m0wp1sub-195765_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-195765/mri/mwp1sub-195765_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-195765/mri/p0sub-195765_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-195765/mri/t_sub-195765_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-195765/mri/t_sub-195765_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-195765/mri/wp0sub-195765_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-195765/report/cat_sub-195765_acq-headmotion1_T1w.mat (file)
add(ok): sub-195765/report/catreport_sub-195765_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:44:29 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:44:30 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197544/ds/sub-195765/sub-195765_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-195765/sub-195765_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 53s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
45s
Correct center-of-mass 4s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
78s
SPM preprocessing 1 (estimate 2): 73s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 9s
90s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 14s
Fast Optimized Shooting registration 3s
107s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
94s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 13s
Blood vessel detection 7s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 66s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
119s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.690.08,0.980.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
11s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 25s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 34s
ROI estimation of 'julichbrain' atlas 47s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 40s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 93s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 148s
Write results 151s
518s
Quality check 15s
/var/lib/condor/execute/dir_3197544/ds/sub-195765/report/catreport_sub-195765_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 11 second(s).
Image Quality Rating (IQR): 85.91% (B)
GM volume (GMV): 45.80% (527.44 / 1151.57 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197544/ds/sub-195765/mri
Reports are saved in /var/lib/condor/execute/dir_3197544/ds/sub-195765/report
Labels are saved in /var/lib/condor/execute/dir_3197544/ds/sub-195765/label
------------------------------------------------------------------------
22-Oct-2025 02:10:44 - Done 'CAT12: Segmentation'
22-Oct-2025 02:10:44 - Done
Bye for now...
get(ok): sourcedata/raw/sub-195765/anat/sub-195765_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-195765/label/catROI_sub-195765_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-195765/label/catROI_sub-195765_acq-standard_T1w.mat (file)
unlock(ok): sub-195765/mri/it_sub-195765_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-195765/mri/it_sub-195765_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-195765/mri/it_sub-195765_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-195765/mri/it_sub-195765_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-195765/mri/m0wp1sub-195765_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-195765/mri/m0wp1sub-195765_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-195765/mri/mwp1sub-195765_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-195765/mri/mwp1sub-195765_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-195765/mri/p0sub-195765_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-195765/mri/p0sub-195765_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-195765/mri/t_sub-195765_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-195765/mri/t_sub-195765_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-195765/mri/t_sub-195765_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-195765/mri/t_sub-195765_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-195765/mri/wp0sub-195765_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-195765/mri/wp0sub-195765_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-195765/report/cat_sub-195765_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-195765/report/cat_sub-195765_acq-standard_T1w.mat (file)
unlock(ok): sub-195765/report/catreport_sub-195765_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-195765/report/catreport_sub-195765_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197544/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-195765/label/catROI_sub-195765_acq-headmotion2_T1w.mat (file)
add(ok): sub-195765/label/catROI_sub-195765_acq-headmotion2_T1w.xml (file)
add(ok): sub-195765/mri/it_sub-195765_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-195765/mri/it_sub-195765_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-195765/mri/m0wp1sub-195765_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-195765/mri/mwp1sub-195765_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-195765/mri/p0sub-195765_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-195765/mri/t_sub-195765_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-195765/mri/t_sub-195765_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-195765/mri/wp0sub-195765_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-195765/report/cat_sub-195765_acq-headmotion2_T1w.mat (file)
add(ok): sub-195765/report/cat_sub-195765_acq-headmotion2_T1w.xml (file)
add(ok): sub-195765/report/catlog_sub-195765_acq-headmotion2_T1w.txt (file)
add(ok): sub-195765/report/catreport_sub-195765_acq-headmotion2_T1w.pdf (file)
add(ok): sub-195765/label/catROI_sub-195765_acq-headmotion1_T1w.mat (file)
add(ok): sub-195765/label/catROI_sub-195765_acq-standard_T1w.mat (file)
add(ok): sub-195765/mri/it_sub-195765_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-195765/mri/it_sub-195765_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-195765/mri/it_sub-195765_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-195765/mri/it_sub-195765_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-195765/mri/m0wp1sub-195765_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-195765/mri/m0wp1sub-195765_acq-standard_T1w.nii.gz (file)
add(ok): sub-195765/mri/mwp1sub-195765_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-195765/mri/mwp1sub-195765_acq-standard_T1w.nii.gz (file)
add(ok): sub-195765/mri/p0sub-195765_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-195765/mri/p0sub-195765_acq-standard_T1w.nii.gz (file)
add(ok): sub-195765/mri/t_sub-195765_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-195765/mri/t_sub-195765_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-195765/mri/t_sub-195765_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-195765/mri/t_sub-195765_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-195765/mri/wp0sub-195765_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-195765/mri/wp0sub-195765_acq-standard_T1w.nii.gz (file)
add(ok): sub-195765/report/cat_sub-195765_acq-headmotion1_T1w.mat (file)
add(ok): sub-195765/report/cat_sub-195765_acq-standard_T1w.mat (file)
add(ok): sub-195765/report/catreport_sub-195765_acq-headmotion1_T1w.pdf (file)
add(ok): sub-195765/report/catreport_sub-195765_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-195765/label/catROI_sub-195765_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/label/catROI_sub-195765_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/label/catROI_sub-195765_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/it_sub-195765_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/it_sub-195765_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/it_sub-195765_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/it_sub-195765_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/it_sub-195765_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/it_sub-195765_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/m0wp1sub-195765_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/m0wp1sub-195765_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/m0wp1sub-195765_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/mwp1sub-195765_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/mwp1sub-195765_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/mwp1sub-195765_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/p0sub-195765_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/p0sub-195765_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/p0sub-195765_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/t_sub-195765_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/t_sub-195765_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/t_sub-195765_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/t_sub-195765_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/t_sub-195765_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/t_sub-195765_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/wp0sub-195765_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/wp0sub-195765_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-195765/mri/wp0sub-195765_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-195765/report/cat_sub-195765_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/report/cat_sub-195765_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/report/cat_sub-195765_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-195765/report/catreport_sub-195765_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-195765/report/catreport_sub-195765_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-195765/report/catreport_sub-195765_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000628 seconds
flock: executing git
SUCCESS
View git blame Copy permalink