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ds004173-catqc/logs/10071093.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197513/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197513/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197513/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197513/ds/sub-778481/sub-778481_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-778481/sub-778481_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 78s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 6s
Final scaling 8s
51s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
92s
SPM preprocessing 1 (estimate 2): 86s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 48s
Update probability maps 10s
98s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 12s
120s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
104s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 15s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 75s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
135s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.05,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
8s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 15s
ROI estimation of 'neuromorphometrics' atlas 56s
ROI estimation of 'lpba40' atlas 17s
ROI estimation of 'hammers' atlas 39s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 41s
ROI estimation of 'anatomy3' atlas 61s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 134s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 155s
Write results 157s
772s
Quality check 17s
/var/lib/condor/execute/dir_3197513/ds/sub-778481/report/catreport_sub-778481_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 32 minute(s) and 42 second(s).
Image Quality Rating (IQR): 86.10% (B)
GM volume (GMV): 47.99% (620.27 / 1292.62 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197513/ds/sub-778481/mri
Reports are saved in /var/lib/condor/execute/dir_3197513/ds/sub-778481/report
Labels are saved in /var/lib/condor/execute/dir_3197513/ds/sub-778481/label
------------------------------------------------------------------------
22-Oct-2025 01:13:51 - Done 'CAT12: Segmentation'
22-Oct-2025 01:13:51 - Done
Bye for now...
get(ok): sourcedata/raw/sub-778481/anat/sub-778481_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197513/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197513/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-778481/label/catROI_sub-778481_acq-headmotion1_T1w.mat (file)
add(ok): sub-778481/label/catROI_sub-778481_acq-headmotion1_T1w.xml (file)
add(ok): sub-778481/mri/it_sub-778481_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-778481/mri/it_sub-778481_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-778481/mri/m0wp1sub-778481_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-778481/mri/mwp1sub-778481_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-778481/mri/p0sub-778481_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-778481/mri/t_sub-778481_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-778481/mri/t_sub-778481_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-778481/mri/wp0sub-778481_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-778481/report/cat_sub-778481_acq-headmotion1_T1w.mat (file)
add(ok): sub-778481/report/cat_sub-778481_acq-headmotion1_T1w.xml (file)
add(ok): sub-778481/report/catlog_sub-778481_acq-headmotion1_T1w.txt (file)
add(ok): sub-778481/report/catreport_sub-778481_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:14:43 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:14:43 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197513/ds/sub-778481/sub-778481_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-778481/sub-778481_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 82s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 4s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
91s
SPM preprocessing 1 (estimate 2): 86s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
97s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 7s
114s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
105s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 20s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 72s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
138s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 57s
ROI estimation of 'lpba40' atlas 16s
ROI estimation of 'hammers' atlas 39s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 24s
ROI estimation of 'mori' atlas 36s
ROI estimation of 'anatomy3' atlas 52s
ROI estimation of 'julichbrain' atlas 70s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 10s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 29s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 50s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 113s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 148s
Write results 152s
692s
Quality check 17s
/var/lib/condor/execute/dir_3197513/ds/sub-778481/report/catreport_sub-778481_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 12 second(s).
Image Quality Rating (IQR): 87.27% (B+)
GM volume (GMV): 49.97% (658.50 / 1317.74 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197513/ds/sub-778481/mri
Reports are saved in /var/lib/condor/execute/dir_3197513/ds/sub-778481/report
Labels are saved in /var/lib/condor/execute/dir_3197513/ds/sub-778481/label
------------------------------------------------------------------------
22-Oct-2025 01:45:58 - Done 'CAT12: Segmentation'
22-Oct-2025 01:45:58 - Done
Bye for now...
get(ok): sourcedata/raw/sub-778481/anat/sub-778481_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-778481/label/catROI_sub-778481_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-778481/mri/it_sub-778481_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-778481/mri/it_sub-778481_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-778481/mri/m0wp1sub-778481_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-778481/mri/mwp1sub-778481_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-778481/mri/p0sub-778481_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-778481/mri/t_sub-778481_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-778481/mri/t_sub-778481_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-778481/mri/wp0sub-778481_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-778481/report/cat_sub-778481_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-778481/report/catreport_sub-778481_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197513/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-778481/label/catROI_sub-778481_acq-standard_T1w.mat (file)
add(ok): sub-778481/label/catROI_sub-778481_acq-standard_T1w.xml (file)
add(ok): sub-778481/mri/it_sub-778481_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-778481/mri/it_sub-778481_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-778481/mri/m0wp1sub-778481_acq-standard_T1w.nii.gz (file)
add(ok): sub-778481/mri/mwp1sub-778481_acq-standard_T1w.nii.gz (file)
add(ok): sub-778481/mri/p0sub-778481_acq-standard_T1w.nii.gz (file)
add(ok): sub-778481/mri/t_sub-778481_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-778481/mri/t_sub-778481_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-778481/mri/wp0sub-778481_acq-standard_T1w.nii.gz (file)
add(ok): sub-778481/report/cat_sub-778481_acq-standard_T1w.mat (file)
add(ok): sub-778481/report/cat_sub-778481_acq-standard_T1w.xml (file)
add(ok): sub-778481/report/catlog_sub-778481_acq-standard_T1w.txt (file)
add(ok): sub-778481/report/catreport_sub-778481_acq-standard_T1w.pdf (file)
add(ok): sub-778481/label/catROI_sub-778481_acq-headmotion1_T1w.mat (file)
add(ok): sub-778481/mri/it_sub-778481_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-778481/mri/it_sub-778481_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-778481/mri/m0wp1sub-778481_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-778481/mri/mwp1sub-778481_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-778481/mri/p0sub-778481_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-778481/mri/t_sub-778481_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-778481/mri/t_sub-778481_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-778481/mri/wp0sub-778481_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-778481/report/cat_sub-778481_acq-headmotion1_T1w.mat (file)
add(ok): sub-778481/report/catreport_sub-778481_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:46:55 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:46:56 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197513/ds/sub-778481/sub-778481_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-778481/sub-778481_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 79s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 6s
Final scaling 7s
49s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
85s
SPM preprocessing 1 (estimate 2): 88s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
96s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 7s
111s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
103s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 20s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 75s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
139s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.05,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
3s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 50s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 37s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 25s
ROI estimation of 'mori' atlas 35s
ROI estimation of 'anatomy3' atlas 50s
ROI estimation of 'julichbrain' atlas 59s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 39s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 79s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 125s
Write results 127s
589s
Quality check 14s
/var/lib/condor/execute/dir_3197513/ds/sub-778481/report/catreport_sub-778481_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 29 minute(s) and 20 second(s).
Image Quality Rating (IQR): 87.18% (B+)
GM volume (GMV): 48.27% (628.33 / 1301.71 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197513/ds/sub-778481/mri
Reports are saved in /var/lib/condor/execute/dir_3197513/ds/sub-778481/report
Labels are saved in /var/lib/condor/execute/dir_3197513/ds/sub-778481/label
------------------------------------------------------------------------
22-Oct-2025 02:16:18 - Done 'CAT12: Segmentation'
22-Oct-2025 02:16:18 - Done
Bye for now...
get(ok): sourcedata/raw/sub-778481/anat/sub-778481_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-778481/label/catROI_sub-778481_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-778481/label/catROI_sub-778481_acq-standard_T1w.mat (file)
unlock(ok): sub-778481/mri/it_sub-778481_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-778481/mri/it_sub-778481_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-778481/mri/it_sub-778481_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-778481/mri/it_sub-778481_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-778481/mri/m0wp1sub-778481_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-778481/mri/m0wp1sub-778481_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-778481/mri/mwp1sub-778481_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-778481/mri/mwp1sub-778481_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-778481/mri/p0sub-778481_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-778481/mri/p0sub-778481_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-778481/mri/t_sub-778481_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-778481/mri/t_sub-778481_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-778481/mri/t_sub-778481_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-778481/mri/t_sub-778481_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-778481/mri/wp0sub-778481_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-778481/mri/wp0sub-778481_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-778481/report/cat_sub-778481_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-778481/report/cat_sub-778481_acq-standard_T1w.mat (file)
unlock(ok): sub-778481/report/catreport_sub-778481_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-778481/report/catreport_sub-778481_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197513/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-778481/label/catROI_sub-778481_acq-headmotion2_T1w.mat (file)
add(ok): sub-778481/label/catROI_sub-778481_acq-headmotion2_T1w.xml (file)
add(ok): sub-778481/mri/it_sub-778481_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-778481/mri/it_sub-778481_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-778481/mri/m0wp1sub-778481_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-778481/mri/mwp1sub-778481_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-778481/mri/p0sub-778481_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-778481/mri/t_sub-778481_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-778481/mri/t_sub-778481_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-778481/mri/wp0sub-778481_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-778481/report/cat_sub-778481_acq-headmotion2_T1w.mat (file)
add(ok): sub-778481/report/cat_sub-778481_acq-headmotion2_T1w.xml (file)
add(ok): sub-778481/report/catlog_sub-778481_acq-headmotion2_T1w.txt (file)
add(ok): sub-778481/report/catreport_sub-778481_acq-headmotion2_T1w.pdf (file)
add(ok): sub-778481/label/catROI_sub-778481_acq-headmotion1_T1w.mat (file)
add(ok): sub-778481/label/catROI_sub-778481_acq-standard_T1w.mat (file)
add(ok): sub-778481/mri/it_sub-778481_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-778481/mri/it_sub-778481_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-778481/mri/it_sub-778481_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-778481/mri/it_sub-778481_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-778481/mri/m0wp1sub-778481_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-778481/mri/m0wp1sub-778481_acq-standard_T1w.nii.gz (file)
add(ok): sub-778481/mri/mwp1sub-778481_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-778481/mri/mwp1sub-778481_acq-standard_T1w.nii.gz (file)
add(ok): sub-778481/mri/p0sub-778481_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-778481/mri/p0sub-778481_acq-standard_T1w.nii.gz (file)
add(ok): sub-778481/mri/t_sub-778481_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-778481/mri/t_sub-778481_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-778481/mri/t_sub-778481_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-778481/mri/t_sub-778481_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-778481/mri/wp0sub-778481_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-778481/mri/wp0sub-778481_acq-standard_T1w.nii.gz (file)
add(ok): sub-778481/report/cat_sub-778481_acq-headmotion1_T1w.mat (file)
add(ok): sub-778481/report/cat_sub-778481_acq-standard_T1w.mat (file)
add(ok): sub-778481/report/catreport_sub-778481_acq-headmotion1_T1w.pdf (file)
add(ok): sub-778481/report/catreport_sub-778481_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-778481/label/catROI_sub-778481_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/label/catROI_sub-778481_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/label/catROI_sub-778481_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/it_sub-778481_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/it_sub-778481_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/it_sub-778481_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/it_sub-778481_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/it_sub-778481_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/it_sub-778481_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/m0wp1sub-778481_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/m0wp1sub-778481_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/m0wp1sub-778481_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/mwp1sub-778481_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/mwp1sub-778481_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/mwp1sub-778481_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/p0sub-778481_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/p0sub-778481_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/p0sub-778481_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/t_sub-778481_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/t_sub-778481_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/t_sub-778481_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/t_sub-778481_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/t_sub-778481_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/t_sub-778481_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/wp0sub-778481_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/wp0sub-778481_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-778481/mri/wp0sub-778481_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-778481/report/cat_sub-778481_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/report/cat_sub-778481_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/report/cat_sub-778481_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-778481/report/catreport_sub-778481_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-778481/report/catreport_sub-778481_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-778481/report/catreport_sub-778481_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000042 seconds
flock: executing git
SUCCESS
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