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ds004173-catqc/logs/10071091.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197495/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197495/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197495/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197495/ds/sub-579247/sub-579247_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-579247/sub-579247_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 65s
Affine preprocessing (APP)
Initialize 9s
Estimate background 9s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
47s
Correct center-of-mass 7s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
83s
SPM preprocessing 1 (estimate 2): 75s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
96s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 7s
116s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.09) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
103s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 63s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
120s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 35s
ROI estimation of 'lpba40' atlas 11s
ROI estimation of 'hammers' atlas 26s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 12s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 33s
ROI estimation of 'anatomy3' atlas 48s
ROI estimation of 'julichbrain' atlas 63s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 31s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 133s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 202s
Write results 206s
718s
Quality check 19s
/var/lib/condor/execute/dir_3197495/ds/sub-579247/report/catreport_sub-579247_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 24 second(s).
Image Quality Rating (IQR): 85.73% (B)
GM volume (GMV): 46.68% (602.80 / 1291.23 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197495/ds/sub-579247/mri
Reports are saved in /var/lib/condor/execute/dir_3197495/ds/sub-579247/report
Labels are saved in /var/lib/condor/execute/dir_3197495/ds/sub-579247/label
------------------------------------------------------------------------
22-Oct-2025 01:11:34 - Done 'CAT12: Segmentation'
22-Oct-2025 01:11:34 - Done
Bye for now...
get(ok): sourcedata/raw/sub-579247/anat/sub-579247_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197495/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197495/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-579247/label/catROI_sub-579247_acq-headmotion1_T1w.mat (file)
add(ok): sub-579247/label/catROI_sub-579247_acq-headmotion1_T1w.xml (file)
add(ok): sub-579247/mri/it_sub-579247_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-579247/mri/it_sub-579247_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-579247/mri/m0wp1sub-579247_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-579247/mri/mwp1sub-579247_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-579247/mri/p0sub-579247_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-579247/mri/t_sub-579247_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-579247/mri/t_sub-579247_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-579247/mri/wp0sub-579247_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-579247/report/cat_sub-579247_acq-headmotion1_T1w.mat (file)
add(ok): sub-579247/report/cat_sub-579247_acq-headmotion1_T1w.xml (file)
add(ok): sub-579247/report/catlog_sub-579247_acq-headmotion1_T1w.txt (file)
add(ok): sub-579247/report/catreport_sub-579247_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:13:03 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:13:04 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197495/ds/sub-579247/sub-579247_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-579247/sub-579247_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 71s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 7s
46s
Correct center-of-mass 7s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
74s
SPM preprocessing 1 (estimate 2): 74s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
95s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 12s
121s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.02) 15s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 43s
119s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 19s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 74s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
139s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 34s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 24s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 19s
ROI estimation of 'anatomy3' atlas 28s
ROI estimation of 'julichbrain' atlas 58s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 50s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 106s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 159s
Write results 162s
569s
Quality check 16s
/var/lib/condor/execute/dir_3197495/ds/sub-579247/report/catreport_sub-579247_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 29 minute(s) and 29 second(s).
Image Quality Rating (IQR): 87.85% (B+)
GM volume (GMV): 48.21% (632.05 / 1311.14 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197495/ds/sub-579247/mri
Reports are saved in /var/lib/condor/execute/dir_3197495/ds/sub-579247/report
Labels are saved in /var/lib/condor/execute/dir_3197495/ds/sub-579247/label
------------------------------------------------------------------------
22-Oct-2025 01:42:39 - Done 'CAT12: Segmentation'
22-Oct-2025 01:42:39 - Done
Bye for now...
get(ok): sourcedata/raw/sub-579247/anat/sub-579247_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-579247/label/catROI_sub-579247_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-579247/mri/it_sub-579247_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-579247/mri/it_sub-579247_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-579247/mri/m0wp1sub-579247_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-579247/mri/mwp1sub-579247_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-579247/mri/p0sub-579247_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-579247/mri/t_sub-579247_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-579247/mri/t_sub-579247_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-579247/mri/wp0sub-579247_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-579247/report/cat_sub-579247_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-579247/report/catreport_sub-579247_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197495/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-579247/label/catROI_sub-579247_acq-standard_T1w.mat (file)
add(ok): sub-579247/label/catROI_sub-579247_acq-standard_T1w.xml (file)
add(ok): sub-579247/mri/it_sub-579247_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-579247/mri/it_sub-579247_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-579247/mri/m0wp1sub-579247_acq-standard_T1w.nii.gz (file)
add(ok): sub-579247/mri/mwp1sub-579247_acq-standard_T1w.nii.gz (file)
add(ok): sub-579247/mri/p0sub-579247_acq-standard_T1w.nii.gz (file)
add(ok): sub-579247/mri/t_sub-579247_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-579247/mri/t_sub-579247_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-579247/mri/wp0sub-579247_acq-standard_T1w.nii.gz (file)
add(ok): sub-579247/report/cat_sub-579247_acq-standard_T1w.mat (file)
add(ok): sub-579247/report/cat_sub-579247_acq-standard_T1w.xml (file)
add(ok): sub-579247/report/catlog_sub-579247_acq-standard_T1w.txt (file)
add(ok): sub-579247/report/catreport_sub-579247_acq-standard_T1w.pdf (file)
add(ok): sub-579247/label/catROI_sub-579247_acq-headmotion1_T1w.mat (file)
add(ok): sub-579247/mri/it_sub-579247_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-579247/mri/it_sub-579247_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-579247/mri/m0wp1sub-579247_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-579247/mri/mwp1sub-579247_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-579247/mri/p0sub-579247_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-579247/mri/t_sub-579247_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-579247/mri/t_sub-579247_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-579247/mri/wp0sub-579247_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-579247/report/cat_sub-579247_acq-headmotion1_T1w.mat (file)
add(ok): sub-579247/report/catreport_sub-579247_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:44:24 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:44:24 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197495/ds/sub-579247/sub-579247_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-579247/sub-579247_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 71s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
48s
Correct center-of-mass 6s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 87s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 45s
Update probability maps 9s
95s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 10s
116s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
102s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 17s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 63s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
123s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 18s
ROI estimation of 'anatomy3' atlas 25s
ROI estimation of 'julichbrain' atlas 34s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 33s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 94s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 159s
Write results 163s
496s
Quality check 17s
/var/lib/condor/execute/dir_3197495/ds/sub-579247/report/catreport_sub-579247_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 41 second(s).
Image Quality Rating (IQR): 86.35% (B)
GM volume (GMV): 46.59% (601.12 / 1290.23 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197495/ds/sub-579247/mri
Reports are saved in /var/lib/condor/execute/dir_3197495/ds/sub-579247/report
Labels are saved in /var/lib/condor/execute/dir_3197495/ds/sub-579247/label
------------------------------------------------------------------------
22-Oct-2025 02:11:10 - Done 'CAT12: Segmentation'
22-Oct-2025 02:11:10 - Done
Bye for now...
get(ok): sourcedata/raw/sub-579247/anat/sub-579247_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-579247/label/catROI_sub-579247_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-579247/label/catROI_sub-579247_acq-standard_T1w.mat (file)
unlock(ok): sub-579247/mri/it_sub-579247_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-579247/mri/it_sub-579247_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-579247/mri/it_sub-579247_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-579247/mri/it_sub-579247_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-579247/mri/m0wp1sub-579247_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-579247/mri/m0wp1sub-579247_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-579247/mri/mwp1sub-579247_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-579247/mri/mwp1sub-579247_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-579247/mri/p0sub-579247_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-579247/mri/p0sub-579247_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-579247/mri/t_sub-579247_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-579247/mri/t_sub-579247_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-579247/mri/t_sub-579247_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-579247/mri/t_sub-579247_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-579247/mri/wp0sub-579247_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-579247/mri/wp0sub-579247_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-579247/report/cat_sub-579247_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-579247/report/cat_sub-579247_acq-standard_T1w.mat (file)
unlock(ok): sub-579247/report/catreport_sub-579247_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-579247/report/catreport_sub-579247_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197495/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-579247/label/catROI_sub-579247_acq-headmotion2_T1w.mat (file)
add(ok): sub-579247/label/catROI_sub-579247_acq-headmotion2_T1w.xml (file)
add(ok): sub-579247/mri/it_sub-579247_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-579247/mri/it_sub-579247_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-579247/mri/m0wp1sub-579247_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-579247/mri/mwp1sub-579247_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-579247/mri/p0sub-579247_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-579247/mri/t_sub-579247_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-579247/mri/t_sub-579247_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-579247/mri/wp0sub-579247_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-579247/report/cat_sub-579247_acq-headmotion2_T1w.mat (file)
add(ok): sub-579247/report/cat_sub-579247_acq-headmotion2_T1w.xml (file)
add(ok): sub-579247/report/catlog_sub-579247_acq-headmotion2_T1w.txt (file)
add(ok): sub-579247/report/catreport_sub-579247_acq-headmotion2_T1w.pdf (file)
add(ok): sub-579247/label/catROI_sub-579247_acq-headmotion1_T1w.mat (file)
add(ok): sub-579247/label/catROI_sub-579247_acq-standard_T1w.mat (file)
add(ok): sub-579247/mri/it_sub-579247_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-579247/mri/it_sub-579247_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-579247/mri/it_sub-579247_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-579247/mri/it_sub-579247_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-579247/mri/m0wp1sub-579247_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-579247/mri/m0wp1sub-579247_acq-standard_T1w.nii.gz (file)
add(ok): sub-579247/mri/mwp1sub-579247_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-579247/mri/mwp1sub-579247_acq-standard_T1w.nii.gz (file)
add(ok): sub-579247/mri/p0sub-579247_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-579247/mri/p0sub-579247_acq-standard_T1w.nii.gz (file)
add(ok): sub-579247/mri/t_sub-579247_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-579247/mri/t_sub-579247_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-579247/mri/t_sub-579247_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-579247/mri/t_sub-579247_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-579247/mri/wp0sub-579247_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-579247/mri/wp0sub-579247_acq-standard_T1w.nii.gz (file)
add(ok): sub-579247/report/cat_sub-579247_acq-headmotion1_T1w.mat (file)
add(ok): sub-579247/report/cat_sub-579247_acq-standard_T1w.mat (file)
add(ok): sub-579247/report/catreport_sub-579247_acq-headmotion1_T1w.pdf (file)
add(ok): sub-579247/report/catreport_sub-579247_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-579247/label/catROI_sub-579247_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/label/catROI_sub-579247_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/label/catROI_sub-579247_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/it_sub-579247_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/it_sub-579247_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/it_sub-579247_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/it_sub-579247_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/it_sub-579247_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/it_sub-579247_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/m0wp1sub-579247_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/m0wp1sub-579247_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/m0wp1sub-579247_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/mwp1sub-579247_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/mwp1sub-579247_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/mwp1sub-579247_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/p0sub-579247_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/p0sub-579247_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/p0sub-579247_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/t_sub-579247_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/t_sub-579247_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/t_sub-579247_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/t_sub-579247_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/t_sub-579247_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/t_sub-579247_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/wp0sub-579247_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/wp0sub-579247_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-579247/mri/wp0sub-579247_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-579247/report/cat_sub-579247_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/report/cat_sub-579247_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/report/cat_sub-579247_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-579247/report/catreport_sub-579247_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-579247/report/catreport_sub-579247_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-579247/report/catreport_sub-579247_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000731 seconds
flock: executing git
SUCCESS
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