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ds004173-catqc/logs/10071088.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197470/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197470/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197470/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197470/ds/sub-966788/sub-966788_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-966788/sub-966788_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 77s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
48s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
85s
SPM preprocessing 1 (estimate 2): 56s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 49s
Update probability maps 10s
100s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 8s
117s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 33s
107s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 22s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 88s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
158s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 66s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 48s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 133s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 153s
Write results 156s
806s
Quality check 16s
/var/lib/condor/execute/dir_3197470/ds/sub-966788/report/catreport_sub-966788_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 32 minute(s) and 49 second(s).
Image Quality Rating (IQR): 87.88% (B+)
GM volume (GMV): 42.88% (610.24 / 1423.07 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197470/ds/sub-966788/mri
Reports are saved in /var/lib/condor/execute/dir_3197470/ds/sub-966788/report
Labels are saved in /var/lib/condor/execute/dir_3197470/ds/sub-966788/label
------------------------------------------------------------------------
22-Oct-2025 01:13:59 - Done 'CAT12: Segmentation'
22-Oct-2025 01:13:59 - Done
Bye for now...
get(ok): sourcedata/raw/sub-966788/anat/sub-966788_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197470/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197470/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-966788/label/catROI_sub-966788_acq-standard_T1w.mat (file)
add(ok): sub-966788/label/catROI_sub-966788_acq-standard_T1w.xml (file)
add(ok): sub-966788/mri/it_sub-966788_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-966788/mri/it_sub-966788_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-966788/mri/m0wp1sub-966788_acq-standard_T1w.nii.gz (file)
add(ok): sub-966788/mri/mwp1sub-966788_acq-standard_T1w.nii.gz (file)
add(ok): sub-966788/mri/p0sub-966788_acq-standard_T1w.nii.gz (file)
add(ok): sub-966788/mri/t_sub-966788_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-966788/mri/t_sub-966788_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-966788/mri/wp0sub-966788_acq-standard_T1w.nii.gz (file)
add(ok): sub-966788/report/cat_sub-966788_acq-standard_T1w.mat (file)
add(ok): sub-966788/report/cat_sub-966788_acq-standard_T1w.xml (file)
add(ok): sub-966788/report/catlog_sub-966788_acq-standard_T1w.txt (file)
add(ok): sub-966788/report/catreport_sub-966788_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:14:46 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:14:46 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197470/ds/sub-966788/sub-966788_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-966788/sub-966788_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 74s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 6s
Final scaling 8s
50s
Correct center-of-mass 5s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
82s
SPM preprocessing 1 (estimate 2): 80s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 47s
Update probability maps 10s
98s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 12s
120s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.04) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 33s
105s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 15s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 75s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
136s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.970.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
8s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 18s
ROI estimation of 'neuromorphometrics' atlas 67s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 48s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 30s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 63s
ROI estimation of 'julichbrain' atlas 74s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 30s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 52s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 105s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 136s
Write results 138s
739s
Quality check 15s
/var/lib/condor/execute/dir_3197470/ds/sub-966788/report/catreport_sub-966788_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 32 minute(s) and 17 second(s).
Image Quality Rating (IQR): 84.12% (B)
GM volume (GMV): 41.44% (572.65 / 1381.79 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197470/ds/sub-966788/mri
Reports are saved in /var/lib/condor/execute/dir_3197470/ds/sub-966788/report
Labels are saved in /var/lib/condor/execute/dir_3197470/ds/sub-966788/label
------------------------------------------------------------------------
22-Oct-2025 01:47:05 - Done 'CAT12: Segmentation'
22-Oct-2025 01:47:05 - Done
Bye for now...
get(ok): sourcedata/raw/sub-966788/anat/sub-966788_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-966788/label/catROI_sub-966788_acq-standard_T1w.mat (file)
unlock(ok): sub-966788/mri/it_sub-966788_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-966788/mri/it_sub-966788_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-966788/mri/m0wp1sub-966788_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-966788/mri/mwp1sub-966788_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-966788/mri/p0sub-966788_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-966788/mri/t_sub-966788_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-966788/mri/t_sub-966788_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-966788/mri/wp0sub-966788_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-966788/report/cat_sub-966788_acq-standard_T1w.mat (file)
unlock(ok): sub-966788/report/catreport_sub-966788_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197470/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-966788/label/catROI_sub-966788_acq-headmotion2_T1w.mat (file)
add(ok): sub-966788/label/catROI_sub-966788_acq-headmotion2_T1w.xml (file)
add(ok): sub-966788/mri/it_sub-966788_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-966788/mri/it_sub-966788_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-966788/mri/m0wp1sub-966788_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-966788/mri/mwp1sub-966788_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-966788/mri/p0sub-966788_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-966788/mri/t_sub-966788_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-966788/mri/t_sub-966788_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-966788/mri/wp0sub-966788_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-966788/report/cat_sub-966788_acq-headmotion2_T1w.mat (file)
add(ok): sub-966788/report/cat_sub-966788_acq-headmotion2_T1w.xml (file)
add(ok): sub-966788/report/catlog_sub-966788_acq-headmotion2_T1w.txt (file)
add(ok): sub-966788/report/catreport_sub-966788_acq-headmotion2_T1w.pdf (file)
add(ok): sub-966788/label/catROI_sub-966788_acq-standard_T1w.mat (file)
add(ok): sub-966788/mri/it_sub-966788_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-966788/mri/it_sub-966788_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-966788/mri/m0wp1sub-966788_acq-standard_T1w.nii.gz (file)
add(ok): sub-966788/mri/mwp1sub-966788_acq-standard_T1w.nii.gz (file)
add(ok): sub-966788/mri/p0sub-966788_acq-standard_T1w.nii.gz (file)
add(ok): sub-966788/mri/t_sub-966788_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-966788/mri/t_sub-966788_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-966788/mri/wp0sub-966788_acq-standard_T1w.nii.gz (file)
add(ok): sub-966788/report/cat_sub-966788_acq-standard_T1w.mat (file)
add(ok): sub-966788/report/catreport_sub-966788_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:47:52 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:47:52 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197470/ds/sub-966788/sub-966788_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-966788/sub-966788_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 73s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
48s
Correct center-of-mass 5s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 66s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 17s
Update Skull-Stripping 47s
Update probability maps 10s
97s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 4s
108s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
104s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 15s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 80s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
140s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
8s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 17s
ROI estimation of 'neuromorphometrics' atlas 56s
ROI estimation of 'lpba40' atlas 19s
ROI estimation of 'hammers' atlas 38s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 46s
ROI estimation of 'julichbrain' atlas 60s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 47s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 93s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 111s
Write results 113s
607s
Quality check 13s
/var/lib/condor/execute/dir_3197470/ds/sub-966788/report/catreport_sub-966788_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 29 minute(s) and 10 second(s).
Image Quality Rating (IQR): 86.11% (B)
GM volume (GMV): 42.13% (584.67 / 1387.89 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197470/ds/sub-966788/mri
Reports are saved in /var/lib/condor/execute/dir_3197470/ds/sub-966788/report
Labels are saved in /var/lib/condor/execute/dir_3197470/ds/sub-966788/label
------------------------------------------------------------------------
22-Oct-2025 02:17:05 - Done 'CAT12: Segmentation'
22-Oct-2025 02:17:05 - Done
Bye for now...
get(ok): sourcedata/raw/sub-966788/anat/sub-966788_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-966788/label/catROI_sub-966788_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-966788/label/catROI_sub-966788_acq-standard_T1w.mat (file)
unlock(ok): sub-966788/mri/it_sub-966788_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-966788/mri/it_sub-966788_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-966788/mri/it_sub-966788_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-966788/mri/it_sub-966788_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-966788/mri/m0wp1sub-966788_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-966788/mri/m0wp1sub-966788_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-966788/mri/mwp1sub-966788_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-966788/mri/mwp1sub-966788_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-966788/mri/p0sub-966788_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-966788/mri/p0sub-966788_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-966788/mri/t_sub-966788_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-966788/mri/t_sub-966788_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-966788/mri/t_sub-966788_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-966788/mri/t_sub-966788_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-966788/mri/wp0sub-966788_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-966788/mri/wp0sub-966788_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-966788/report/cat_sub-966788_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-966788/report/cat_sub-966788_acq-standard_T1w.mat (file)
unlock(ok): sub-966788/report/catreport_sub-966788_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-966788/report/catreport_sub-966788_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197470/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-966788/label/catROI_sub-966788_acq-headmotion1_T1w.mat (file)
add(ok): sub-966788/label/catROI_sub-966788_acq-headmotion1_T1w.xml (file)
add(ok): sub-966788/mri/it_sub-966788_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-966788/mri/it_sub-966788_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-966788/mri/m0wp1sub-966788_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-966788/mri/mwp1sub-966788_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-966788/mri/p0sub-966788_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-966788/mri/t_sub-966788_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-966788/mri/t_sub-966788_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-966788/mri/wp0sub-966788_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-966788/report/cat_sub-966788_acq-headmotion1_T1w.mat (file)
add(ok): sub-966788/report/cat_sub-966788_acq-headmotion1_T1w.xml (file)
add(ok): sub-966788/report/catlog_sub-966788_acq-headmotion1_T1w.txt (file)
add(ok): sub-966788/report/catreport_sub-966788_acq-headmotion1_T1w.pdf (file)
add(ok): sub-966788/label/catROI_sub-966788_acq-headmotion2_T1w.mat (file)
add(ok): sub-966788/label/catROI_sub-966788_acq-standard_T1w.mat (file)
add(ok): sub-966788/mri/it_sub-966788_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-966788/mri/it_sub-966788_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-966788/mri/it_sub-966788_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-966788/mri/it_sub-966788_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-966788/mri/m0wp1sub-966788_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-966788/mri/m0wp1sub-966788_acq-standard_T1w.nii.gz (file)
add(ok): sub-966788/mri/mwp1sub-966788_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-966788/mri/mwp1sub-966788_acq-standard_T1w.nii.gz (file)
add(ok): sub-966788/mri/p0sub-966788_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-966788/mri/p0sub-966788_acq-standard_T1w.nii.gz (file)
add(ok): sub-966788/mri/t_sub-966788_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-966788/mri/t_sub-966788_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-966788/mri/t_sub-966788_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-966788/mri/t_sub-966788_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-966788/mri/wp0sub-966788_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-966788/mri/wp0sub-966788_acq-standard_T1w.nii.gz (file)
add(ok): sub-966788/report/cat_sub-966788_acq-headmotion2_T1w.mat (file)
add(ok): sub-966788/report/cat_sub-966788_acq-standard_T1w.mat (file)
add(ok): sub-966788/report/catreport_sub-966788_acq-headmotion2_T1w.pdf (file)
add(ok): sub-966788/report/catreport_sub-966788_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-966788/label/catROI_sub-966788_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/label/catROI_sub-966788_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/label/catROI_sub-966788_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/it_sub-966788_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/it_sub-966788_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/it_sub-966788_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/it_sub-966788_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/it_sub-966788_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/it_sub-966788_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/m0wp1sub-966788_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/m0wp1sub-966788_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/m0wp1sub-966788_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/mwp1sub-966788_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/mwp1sub-966788_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/mwp1sub-966788_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/p0sub-966788_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/p0sub-966788_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/p0sub-966788_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/t_sub-966788_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/t_sub-966788_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/t_sub-966788_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/t_sub-966788_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/t_sub-966788_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/t_sub-966788_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/wp0sub-966788_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/wp0sub-966788_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-966788/mri/wp0sub-966788_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-966788/report/cat_sub-966788_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/report/cat_sub-966788_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/report/cat_sub-966788_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-966788/report/catreport_sub-966788_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-966788/report/catreport_sub-966788_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-966788/report/catreport_sub-966788_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000060 seconds
flock: executing git
SUCCESS
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