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ds004173-catqc/logs/10071087.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197467/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197467/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197467/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197467/ds/sub-000148/sub-000148_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-000148/sub-000148_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 59s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 6s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
86s
SPM preprocessing 1 (estimate 2): 66s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 15s
Update Skull-Stripping 46s
Update probability maps 10s
95s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 11s
119s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.16) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
102s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 17s
Ventricle detection 17s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 58s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
118s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 34s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 25s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 19s
ROI estimation of 'mori' atlas 39s
ROI estimation of 'anatomy3' atlas 61s
ROI estimation of 'julichbrain' atlas 81s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 132s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 203s
Write results 207s
752s
Quality check 19s
/var/lib/condor/execute/dir_3197467/ds/sub-000148/report/catreport_sub-000148_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 45 second(s).
Image Quality Rating (IQR): 82.69% (B-)
GM volume (GMV): 47.45% (608.54 / 1282.36 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197467/ds/sub-000148/mri
Reports are saved in /var/lib/condor/execute/dir_3197467/ds/sub-000148/report
Labels are saved in /var/lib/condor/execute/dir_3197467/ds/sub-000148/label
------------------------------------------------------------------------
22-Oct-2025 01:11:56 - Done 'CAT12: Segmentation'
22-Oct-2025 01:11:56 - Done
Bye for now...
get(ok): sourcedata/raw/sub-000148/anat/sub-000148_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197467/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197467/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-000148/label/catROI_sub-000148_acq-headmotion1_T1w.mat (file)
add(ok): sub-000148/label/catROI_sub-000148_acq-headmotion1_T1w.xml (file)
add(ok): sub-000148/mri/it_sub-000148_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000148/mri/it_sub-000148_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000148/mri/m0wp1sub-000148_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000148/mri/mwp1sub-000148_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000148/mri/p0sub-000148_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000148/mri/t_sub-000148_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000148/mri/t_sub-000148_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000148/mri/wp0sub-000148_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000148/report/cat_sub-000148_acq-headmotion1_T1w.mat (file)
add(ok): sub-000148/report/cat_sub-000148_acq-headmotion1_T1w.xml (file)
add(ok): sub-000148/report/catlog_sub-000148_acq-headmotion1_T1w.txt (file)
add(ok): sub-000148/report/catreport_sub-000148_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:13:23 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:13:23 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197467/ds/sub-000148/sub-000148_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-000148/sub-000148_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 61s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 5s
Final scaling 6s
44s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
81s
SPM preprocessing 1 (estimate 2): 63s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
96s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 3s
111s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.11) 15s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
102s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 16s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 65s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
125s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 25s
ROI estimation of 'julichbrain' atlas 38s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 17s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 42s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 129s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 199s
Write results 203s
582s
Quality check 18s
/var/lib/condor/execute/dir_3197467/ds/sub-000148/report/catreport_sub-000148_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 27 minute(s) and 57 second(s).
Image Quality Rating (IQR): 86.09% (B)
GM volume (GMV): 49.15% (632.06 / 1286.03 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197467/ds/sub-000148/mri
Reports are saved in /var/lib/condor/execute/dir_3197467/ds/sub-000148/report
Labels are saved in /var/lib/condor/execute/dir_3197467/ds/sub-000148/label
------------------------------------------------------------------------
22-Oct-2025 01:41:24 - Done 'CAT12: Segmentation'
22-Oct-2025 01:41:24 - Done
Bye for now...
get(ok): sourcedata/raw/sub-000148/anat/sub-000148_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-000148/label/catROI_sub-000148_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-000148/mri/it_sub-000148_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-000148/mri/it_sub-000148_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000148/mri/m0wp1sub-000148_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-000148/mri/mwp1sub-000148_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-000148/mri/p0sub-000148_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-000148/mri/t_sub-000148_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-000148/mri/t_sub-000148_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000148/mri/wp0sub-000148_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-000148/report/cat_sub-000148_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-000148/report/catreport_sub-000148_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197467/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-000148/label/catROI_sub-000148_acq-standard_T1w.mat (file)
add(ok): sub-000148/label/catROI_sub-000148_acq-standard_T1w.xml (file)
add(ok): sub-000148/mri/it_sub-000148_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000148/mri/it_sub-000148_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000148/mri/m0wp1sub-000148_acq-standard_T1w.nii.gz (file)
add(ok): sub-000148/mri/mwp1sub-000148_acq-standard_T1w.nii.gz (file)
add(ok): sub-000148/mri/p0sub-000148_acq-standard_T1w.nii.gz (file)
add(ok): sub-000148/mri/t_sub-000148_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000148/mri/t_sub-000148_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000148/mri/wp0sub-000148_acq-standard_T1w.nii.gz (file)
add(ok): sub-000148/report/cat_sub-000148_acq-standard_T1w.mat (file)
add(ok): sub-000148/report/cat_sub-000148_acq-standard_T1w.xml (file)
add(ok): sub-000148/report/catlog_sub-000148_acq-standard_T1w.txt (file)
add(ok): sub-000148/report/catreport_sub-000148_acq-standard_T1w.pdf (file)
add(ok): sub-000148/label/catROI_sub-000148_acq-headmotion1_T1w.mat (file)
add(ok): sub-000148/mri/it_sub-000148_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000148/mri/it_sub-000148_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000148/mri/m0wp1sub-000148_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000148/mri/mwp1sub-000148_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000148/mri/p0sub-000148_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000148/mri/t_sub-000148_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000148/mri/t_sub-000148_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000148/mri/wp0sub-000148_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000148/report/cat_sub-000148_acq-headmotion1_T1w.mat (file)
add(ok): sub-000148/report/catreport_sub-000148_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:43:22 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:43:23 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197467/ds/sub-000148/sub-000148_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-000148/sub-000148_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 10s
Estimate background 8s
Initial correction 8s
Refine background 5s
Final correction 7s
Final scaling 10s
58s
Correct center-of-mass 9s
Affine registration 12s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
82s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 15s
Update Skull-Stripping 46s
Update probability maps 10s
94s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 8s
112s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.17) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
100s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 17s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 70s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
127s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
4s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 24s
ROI estimation of 'julichbrain' atlas 32s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 62s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 117s
Write results 121s
402s
Quality check 18s
/var/lib/condor/execute/dir_3197467/ds/sub-000148/report/catreport_sub-000148_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 47 second(s).
Image Quality Rating (IQR): 87.41% (B+)
GM volume (GMV): 47.83% (615.35 / 1286.55 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197467/ds/sub-000148/mri
Reports are saved in /var/lib/condor/execute/dir_3197467/ds/sub-000148/report
Labels are saved in /var/lib/condor/execute/dir_3197467/ds/sub-000148/label
------------------------------------------------------------------------
22-Oct-2025 02:08:17 - Done 'CAT12: Segmentation'
22-Oct-2025 02:08:17 - Done
Bye for now...
get(ok): sourcedata/raw/sub-000148/anat/sub-000148_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-000148/label/catROI_sub-000148_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-000148/label/catROI_sub-000148_acq-standard_T1w.mat (file)
unlock(ok): sub-000148/mri/it_sub-000148_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-000148/mri/it_sub-000148_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000148/mri/it_sub-000148_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-000148/mri/it_sub-000148_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000148/mri/m0wp1sub-000148_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-000148/mri/m0wp1sub-000148_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000148/mri/mwp1sub-000148_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-000148/mri/mwp1sub-000148_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000148/mri/p0sub-000148_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-000148/mri/p0sub-000148_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000148/mri/t_sub-000148_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-000148/mri/t_sub-000148_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000148/mri/t_sub-000148_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-000148/mri/t_sub-000148_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000148/mri/wp0sub-000148_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-000148/mri/wp0sub-000148_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000148/report/cat_sub-000148_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-000148/report/cat_sub-000148_acq-standard_T1w.mat (file)
unlock(ok): sub-000148/report/catreport_sub-000148_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-000148/report/catreport_sub-000148_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197467/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-000148/label/catROI_sub-000148_acq-headmotion2_T1w.mat (file)
add(ok): sub-000148/label/catROI_sub-000148_acq-headmotion2_T1w.xml (file)
add(ok): sub-000148/mri/it_sub-000148_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000148/mri/it_sub-000148_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000148/mri/m0wp1sub-000148_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000148/mri/mwp1sub-000148_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000148/mri/p0sub-000148_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000148/mri/t_sub-000148_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000148/mri/t_sub-000148_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000148/mri/wp0sub-000148_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000148/report/cat_sub-000148_acq-headmotion2_T1w.mat (file)
add(ok): sub-000148/report/cat_sub-000148_acq-headmotion2_T1w.xml (file)
add(ok): sub-000148/report/catlog_sub-000148_acq-headmotion2_T1w.txt (file)
add(ok): sub-000148/report/catreport_sub-000148_acq-headmotion2_T1w.pdf (file)
add(ok): sub-000148/label/catROI_sub-000148_acq-headmotion1_T1w.mat (file)
add(ok): sub-000148/label/catROI_sub-000148_acq-standard_T1w.mat (file)
add(ok): sub-000148/mri/it_sub-000148_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000148/mri/it_sub-000148_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000148/mri/it_sub-000148_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000148/mri/it_sub-000148_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000148/mri/m0wp1sub-000148_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000148/mri/m0wp1sub-000148_acq-standard_T1w.nii.gz (file)
add(ok): sub-000148/mri/mwp1sub-000148_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000148/mri/mwp1sub-000148_acq-standard_T1w.nii.gz (file)
add(ok): sub-000148/mri/p0sub-000148_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000148/mri/p0sub-000148_acq-standard_T1w.nii.gz (file)
add(ok): sub-000148/mri/t_sub-000148_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000148/mri/t_sub-000148_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000148/mri/t_sub-000148_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000148/mri/t_sub-000148_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000148/mri/wp0sub-000148_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000148/mri/wp0sub-000148_acq-standard_T1w.nii.gz (file)
add(ok): sub-000148/report/cat_sub-000148_acq-headmotion1_T1w.mat (file)
add(ok): sub-000148/report/cat_sub-000148_acq-standard_T1w.mat (file)
add(ok): sub-000148/report/catreport_sub-000148_acq-headmotion1_T1w.pdf (file)
add(ok): sub-000148/report/catreport_sub-000148_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-000148/label/catROI_sub-000148_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/label/catROI_sub-000148_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/label/catROI_sub-000148_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/it_sub-000148_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/it_sub-000148_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/it_sub-000148_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/it_sub-000148_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/it_sub-000148_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/it_sub-000148_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/m0wp1sub-000148_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/m0wp1sub-000148_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/m0wp1sub-000148_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/mwp1sub-000148_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/mwp1sub-000148_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/mwp1sub-000148_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/p0sub-000148_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/p0sub-000148_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/p0sub-000148_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/t_sub-000148_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/t_sub-000148_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/t_sub-000148_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/t_sub-000148_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/t_sub-000148_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/t_sub-000148_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/wp0sub-000148_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/wp0sub-000148_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000148/mri/wp0sub-000148_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000148/report/cat_sub-000148_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/report/cat_sub-000148_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/report/cat_sub-000148_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000148/report/catreport_sub-000148_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-000148/report/catreport_sub-000148_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-000148/report/catreport_sub-000148_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000870 seconds
flock: executing git
SUCCESS
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