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ds004173-catqc/logs/10071084.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197435/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197435/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197435/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197435/ds/sub-009673/sub-009673_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-009673/sub-009673_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 69s
Affine preprocessing (APP)
Initialize 9s
Estimate background 9s
Initial correction 8s
Refine background 4s
Final correction 7s
Final scaling 8s
52s
Correct center-of-mass 4s
Affine registration 20s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
100s
SPM preprocessing 1 (estimate 2): 92s
SPM preprocessing 2 (write)
Write Segmentation 25s
Update Segmentation 17s
Update Skull-Stripping 48s
Update probability maps 12s
102s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 4s
111s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.20) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 33s
108s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 93s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
154s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 37s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.690.08,0.970.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
15s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 18s
ROI estimation of 'neuromorphometrics' atlas 69s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 49s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 19s
ROI estimation of 'aal3' atlas 30s
ROI estimation of 'mori' atlas 44s
ROI estimation of 'anatomy3' atlas 63s
ROI estimation of 'julichbrain' atlas 73s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 30s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 52s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 98s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 112s
Write results 114s
712s
Quality check 16s
/var/lib/condor/execute/dir_3197435/ds/sub-009673/report/catreport_sub-009673_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 34 minute(s) and 10 second(s).
Image Quality Rating (IQR): 86.63% (B)
GM volume (GMV): 46.31% (662.65 / 1430.85 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197435/ds/sub-009673/mri
Reports are saved in /var/lib/condor/execute/dir_3197435/ds/sub-009673/report
Labels are saved in /var/lib/condor/execute/dir_3197435/ds/sub-009673/label
------------------------------------------------------------------------
22-Oct-2025 01:15:19 - Done 'CAT12: Segmentation'
22-Oct-2025 01:15:19 - Done
Bye for now...
get(ok): sourcedata/raw/sub-009673/anat/sub-009673_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197435/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197435/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-009673/label/catROI_sub-009673_acq-headmotion2_T1w.mat (file)
add(ok): sub-009673/label/catROI_sub-009673_acq-headmotion2_T1w.xml (file)
add(ok): sub-009673/mri/it_sub-009673_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-009673/mri/it_sub-009673_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-009673/mri/m0wp1sub-009673_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-009673/mri/mwp1sub-009673_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-009673/mri/p0sub-009673_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-009673/mri/t_sub-009673_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-009673/mri/t_sub-009673_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-009673/mri/wp0sub-009673_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-009673/report/cat_sub-009673_acq-headmotion2_T1w.mat (file)
add(ok): sub-009673/report/cat_sub-009673_acq-headmotion2_T1w.xml (file)
add(ok): sub-009673/report/catlog_sub-009673_acq-headmotion2_T1w.txt (file)
add(ok): sub-009673/report/catreport_sub-009673_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:16:05 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:16:05 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197435/ds/sub-009673/sub-009673_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-009673/sub-009673_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 73s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
48s
Correct center-of-mass 7s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
91s
SPM preprocessing 1 (estimate 2): 77s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 48s
Update probability maps 10s
99s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 23s
Fast Optimized Shooting registration 10s
116s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.09) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
109s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 17s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 85s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
151s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 39s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
12s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 15s
ROI estimation of 'neuromorphometrics' atlas 54s
ROI estimation of 'lpba40' atlas 16s
ROI estimation of 'hammers' atlas 38s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 33s
ROI estimation of 'anatomy3' atlas 50s
ROI estimation of 'julichbrain' atlas 72s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 96s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 103s
Write results 105s
623s
Quality check 16s
/var/lib/condor/execute/dir_3197435/ds/sub-009673/report/catreport_sub-009673_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 7 second(s).
Image Quality Rating (IQR): 87.90% (B+)
GM volume (GMV): 47.35% (702.41 / 1483.50 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197435/ds/sub-009673/mri
Reports are saved in /var/lib/condor/execute/dir_3197435/ds/sub-009673/report
Labels are saved in /var/lib/condor/execute/dir_3197435/ds/sub-009673/label
------------------------------------------------------------------------
22-Oct-2025 01:47:15 - Done 'CAT12: Segmentation'
22-Oct-2025 01:47:15 - Done
Bye for now...
get(ok): sourcedata/raw/sub-009673/anat/sub-009673_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-009673/label/catROI_sub-009673_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-009673/mri/it_sub-009673_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-009673/mri/it_sub-009673_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-009673/mri/m0wp1sub-009673_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-009673/mri/mwp1sub-009673_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-009673/mri/p0sub-009673_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-009673/mri/t_sub-009673_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-009673/mri/t_sub-009673_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-009673/mri/wp0sub-009673_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-009673/report/cat_sub-009673_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-009673/report/catreport_sub-009673_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197435/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-009673/label/catROI_sub-009673_acq-standard_T1w.mat (file)
add(ok): sub-009673/label/catROI_sub-009673_acq-standard_T1w.xml (file)
add(ok): sub-009673/mri/it_sub-009673_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-009673/mri/it_sub-009673_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-009673/mri/m0wp1sub-009673_acq-standard_T1w.nii.gz (file)
add(ok): sub-009673/mri/mwp1sub-009673_acq-standard_T1w.nii.gz (file)
add(ok): sub-009673/mri/p0sub-009673_acq-standard_T1w.nii.gz (file)
add(ok): sub-009673/mri/t_sub-009673_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-009673/mri/t_sub-009673_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-009673/mri/wp0sub-009673_acq-standard_T1w.nii.gz (file)
add(ok): sub-009673/report/cat_sub-009673_acq-standard_T1w.mat (file)
add(ok): sub-009673/report/cat_sub-009673_acq-standard_T1w.xml (file)
add(ok): sub-009673/report/catlog_sub-009673_acq-standard_T1w.txt (file)
add(ok): sub-009673/report/catreport_sub-009673_acq-standard_T1w.pdf (file)
add(ok): sub-009673/label/catROI_sub-009673_acq-headmotion2_T1w.mat (file)
add(ok): sub-009673/mri/it_sub-009673_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-009673/mri/it_sub-009673_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-009673/mri/m0wp1sub-009673_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-009673/mri/mwp1sub-009673_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-009673/mri/p0sub-009673_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-009673/mri/t_sub-009673_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-009673/mri/t_sub-009673_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-009673/mri/wp0sub-009673_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-009673/report/cat_sub-009673_acq-headmotion2_T1w.mat (file)
add(ok): sub-009673/report/catreport_sub-009673_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:48:03 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:48:04 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197435/ds/sub-009673/sub-009673_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-009673/sub-009673_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 72s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
46s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
94s
SPM preprocessing 1 (estimate 2): 75s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 17s
Update Skull-Stripping 47s
Update probability maps 9s
96s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 22s
Fast Optimized Shooting registration 10s
114s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.05) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
110s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 20s
Ventricle detection 21s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 80s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
151s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 37s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 42s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 35s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 30s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 62s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 26s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 40s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 83s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 95s
Write results 96s
540s
Quality check 14s
/var/lib/condor/execute/dir_3197435/ds/sub-009673/report/catreport_sub-009673_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 32 second(s).
Image Quality Rating (IQR): 87.84% (B+)
GM volume (GMV): 46.80% (697.49 / 1490.50 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197435/ds/sub-009673/mri
Reports are saved in /var/lib/condor/execute/dir_3197435/ds/sub-009673/report
Labels are saved in /var/lib/condor/execute/dir_3197435/ds/sub-009673/label
------------------------------------------------------------------------
22-Oct-2025 02:16:39 - Done 'CAT12: Segmentation'
22-Oct-2025 02:16:39 - Done
Bye for now...
get(ok): sourcedata/raw/sub-009673/anat/sub-009673_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-009673/label/catROI_sub-009673_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-009673/label/catROI_sub-009673_acq-standard_T1w.mat (file)
unlock(ok): sub-009673/mri/it_sub-009673_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-009673/mri/it_sub-009673_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-009673/mri/it_sub-009673_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-009673/mri/it_sub-009673_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-009673/mri/m0wp1sub-009673_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-009673/mri/m0wp1sub-009673_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-009673/mri/mwp1sub-009673_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-009673/mri/mwp1sub-009673_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-009673/mri/p0sub-009673_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-009673/mri/p0sub-009673_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-009673/mri/t_sub-009673_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-009673/mri/t_sub-009673_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-009673/mri/t_sub-009673_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-009673/mri/t_sub-009673_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-009673/mri/wp0sub-009673_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-009673/mri/wp0sub-009673_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-009673/report/cat_sub-009673_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-009673/report/cat_sub-009673_acq-standard_T1w.mat (file)
unlock(ok): sub-009673/report/catreport_sub-009673_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-009673/report/catreport_sub-009673_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197435/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-009673/label/catROI_sub-009673_acq-headmotion1_T1w.mat (file)
add(ok): sub-009673/label/catROI_sub-009673_acq-headmotion1_T1w.xml (file)
add(ok): sub-009673/mri/it_sub-009673_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-009673/mri/it_sub-009673_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-009673/mri/m0wp1sub-009673_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-009673/mri/mwp1sub-009673_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-009673/mri/p0sub-009673_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-009673/mri/t_sub-009673_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-009673/mri/t_sub-009673_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-009673/mri/wp0sub-009673_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-009673/report/cat_sub-009673_acq-headmotion1_T1w.mat (file)
add(ok): sub-009673/report/cat_sub-009673_acq-headmotion1_T1w.xml (file)
add(ok): sub-009673/report/catlog_sub-009673_acq-headmotion1_T1w.txt (file)
add(ok): sub-009673/report/catreport_sub-009673_acq-headmotion1_T1w.pdf (file)
add(ok): sub-009673/label/catROI_sub-009673_acq-headmotion2_T1w.mat (file)
add(ok): sub-009673/label/catROI_sub-009673_acq-standard_T1w.mat (file)
add(ok): sub-009673/mri/it_sub-009673_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-009673/mri/it_sub-009673_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-009673/mri/it_sub-009673_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-009673/mri/it_sub-009673_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-009673/mri/m0wp1sub-009673_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-009673/mri/m0wp1sub-009673_acq-standard_T1w.nii.gz (file)
add(ok): sub-009673/mri/mwp1sub-009673_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-009673/mri/mwp1sub-009673_acq-standard_T1w.nii.gz (file)
add(ok): sub-009673/mri/p0sub-009673_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-009673/mri/p0sub-009673_acq-standard_T1w.nii.gz (file)
add(ok): sub-009673/mri/t_sub-009673_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-009673/mri/t_sub-009673_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-009673/mri/t_sub-009673_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-009673/mri/t_sub-009673_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-009673/mri/wp0sub-009673_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-009673/mri/wp0sub-009673_acq-standard_T1w.nii.gz (file)
add(ok): sub-009673/report/cat_sub-009673_acq-headmotion2_T1w.mat (file)
add(ok): sub-009673/report/cat_sub-009673_acq-standard_T1w.mat (file)
add(ok): sub-009673/report/catreport_sub-009673_acq-headmotion2_T1w.pdf (file)
add(ok): sub-009673/report/catreport_sub-009673_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-009673/label/catROI_sub-009673_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/label/catROI_sub-009673_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/label/catROI_sub-009673_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/it_sub-009673_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/it_sub-009673_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/it_sub-009673_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/it_sub-009673_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/it_sub-009673_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/it_sub-009673_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/m0wp1sub-009673_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/m0wp1sub-009673_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/m0wp1sub-009673_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/mwp1sub-009673_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/mwp1sub-009673_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/mwp1sub-009673_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/p0sub-009673_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/p0sub-009673_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/p0sub-009673_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/t_sub-009673_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/t_sub-009673_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/t_sub-009673_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/t_sub-009673_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/t_sub-009673_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/t_sub-009673_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/wp0sub-009673_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/wp0sub-009673_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-009673/mri/wp0sub-009673_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-009673/report/cat_sub-009673_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/report/cat_sub-009673_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/report/cat_sub-009673_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-009673/report/catreport_sub-009673_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-009673/report/catreport_sub-009673_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-009673/report/catreport_sub-009673_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000068 seconds
flock: executing git
SUCCESS
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