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ds004173-catqc/logs/10071082.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197402/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197402/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197402/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:08 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197402/ds/sub-926536/sub-926536_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-926536/sub-926536_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 57s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
47s
Correct center-of-mass 7s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
88s
SPM preprocessing 1 (estimate 2): 60s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
96s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 3s
111s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
101s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 63s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
120s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
4s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 9s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 23s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 20s
ROI estimation of 'anatomy3' atlas 30s
ROI estimation of 'julichbrain' atlas 58s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 27s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 55s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 134s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 201s
Write results 205s
645s
Quality check 18s
/var/lib/condor/execute/dir_3197402/ds/sub-926536/report/catreport_sub-926536_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 47 second(s).
Image Quality Rating (IQR): 85.63% (B)
GM volume (GMV): 47.22% (600.50 / 1271.76 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197402/ds/sub-926536/mri
Reports are saved in /var/lib/condor/execute/dir_3197402/ds/sub-926536/report
Labels are saved in /var/lib/condor/execute/dir_3197402/ds/sub-926536/label
------------------------------------------------------------------------
22-Oct-2025 01:09:59 - Done 'CAT12: Segmentation'
22-Oct-2025 01:09:59 - Done
Bye for now...
get(ok): sourcedata/raw/sub-926536/anat/sub-926536_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197402/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197402/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-926536/label/catROI_sub-926536_acq-standard_T1w.mat (file)
add(ok): sub-926536/label/catROI_sub-926536_acq-standard_T1w.xml (file)
add(ok): sub-926536/mri/it_sub-926536_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-926536/mri/it_sub-926536_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-926536/mri/m0wp1sub-926536_acq-standard_T1w.nii.gz (file)
add(ok): sub-926536/mri/mwp1sub-926536_acq-standard_T1w.nii.gz (file)
add(ok): sub-926536/mri/p0sub-926536_acq-standard_T1w.nii.gz (file)
add(ok): sub-926536/mri/t_sub-926536_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-926536/mri/t_sub-926536_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-926536/mri/wp0sub-926536_acq-standard_T1w.nii.gz (file)
add(ok): sub-926536/report/cat_sub-926536_acq-standard_T1w.mat (file)
add(ok): sub-926536/report/cat_sub-926536_acq-standard_T1w.xml (file)
add(ok): sub-926536/report/catlog_sub-926536_acq-standard_T1w.txt (file)
add(ok): sub-926536/report/catreport_sub-926536_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:11:47 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:11:48 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197402/ds/sub-926536/sub-926536_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-926536/sub-926536_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 5s
Final correction 6s
Final scaling 9s
52s
Correct center-of-mass 6s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
83s
SPM preprocessing 1 (estimate 2): 58s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
96s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 11s
119s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
100s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 17s
Ventricle detection 18s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 61s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
122s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 13s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 22s
ROI estimation of 'julichbrain' atlas 31s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 26s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 63s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 119s
Write results 122s
397s
Quality check 16s
/var/lib/condor/execute/dir_3197402/ds/sub-926536/report/catreport_sub-926536_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 42 second(s).
Image Quality Rating (IQR): 81.44% (B-)
GM volume (GMV): 46.22% (587.72 / 1271.71 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197402/ds/sub-926536/mri
Reports are saved in /var/lib/condor/execute/dir_3197402/ds/sub-926536/report
Labels are saved in /var/lib/condor/execute/dir_3197402/ds/sub-926536/label
------------------------------------------------------------------------
22-Oct-2025 01:36:35 - Done 'CAT12: Segmentation'
22-Oct-2025 01:36:35 - Done
Bye for now...
get(ok): sourcedata/raw/sub-926536/anat/sub-926536_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-926536/label/catROI_sub-926536_acq-standard_T1w.mat (file)
unlock(ok): sub-926536/mri/it_sub-926536_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-926536/mri/it_sub-926536_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-926536/mri/m0wp1sub-926536_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-926536/mri/mwp1sub-926536_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-926536/mri/p0sub-926536_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-926536/mri/t_sub-926536_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-926536/mri/t_sub-926536_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-926536/mri/wp0sub-926536_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-926536/report/cat_sub-926536_acq-standard_T1w.mat (file)
unlock(ok): sub-926536/report/catreport_sub-926536_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197402/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-926536/label/catROI_sub-926536_acq-headmotion1_T1w.mat (file)
add(ok): sub-926536/label/catROI_sub-926536_acq-headmotion1_T1w.xml (file)
add(ok): sub-926536/mri/it_sub-926536_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-926536/mri/it_sub-926536_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-926536/mri/m0wp1sub-926536_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-926536/mri/mwp1sub-926536_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-926536/mri/p0sub-926536_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-926536/mri/t_sub-926536_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-926536/mri/t_sub-926536_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-926536/mri/wp0sub-926536_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-926536/report/cat_sub-926536_acq-headmotion1_T1w.mat (file)
add(ok): sub-926536/report/cat_sub-926536_acq-headmotion1_T1w.xml (file)
add(ok): sub-926536/report/catlog_sub-926536_acq-headmotion1_T1w.txt (file)
add(ok): sub-926536/report/catreport_sub-926536_acq-headmotion1_T1w.pdf (file)
add(ok): sub-926536/label/catROI_sub-926536_acq-standard_T1w.mat (file)
add(ok): sub-926536/mri/it_sub-926536_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-926536/mri/it_sub-926536_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-926536/mri/m0wp1sub-926536_acq-standard_T1w.nii.gz (file)
add(ok): sub-926536/mri/mwp1sub-926536_acq-standard_T1w.nii.gz (file)
add(ok): sub-926536/mri/p0sub-926536_acq-standard_T1w.nii.gz (file)
add(ok): sub-926536/mri/t_sub-926536_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-926536/mri/t_sub-926536_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-926536/mri/wp0sub-926536_acq-standard_T1w.nii.gz (file)
add(ok): sub-926536/report/cat_sub-926536_acq-standard_T1w.mat (file)
add(ok): sub-926536/report/catreport_sub-926536_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:38:31 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:38:32 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197402/ds/sub-926536/sub-926536_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-926536/sub-926536_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 11s
Estimate background 9s
Initial correction 8s
Refine background 5s
Final correction 8s
Final scaling 12s
62s
Correct center-of-mass 12s
Affine registration 21s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
124s
SPM preprocessing 1 (estimate 2): 107s
SPM preprocessing 2 (write)
Write Segmentation 28s
Update Segmentation 16s
Update Skull-Stripping 46s
Update probability maps 10s
100s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 3s
110s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
98s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 17s
Ventricle detection 16s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 70s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
129s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 28s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 20s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 15s
ROI estimation of 'anatomy3' atlas 21s
ROI estimation of 'julichbrain' atlas 28s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 55s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 75s
Write results 77s
328s
Quality check 14s
/var/lib/condor/execute/dir_3197402/ds/sub-926536/report/catreport_sub-926536_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 56 second(s).
Image Quality Rating (IQR): 87.04% (B+)
GM volume (GMV): 46.16% (580.05 / 1256.70 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197402/ds/sub-926536/mri
Reports are saved in /var/lib/condor/execute/dir_3197402/ds/sub-926536/report
Labels are saved in /var/lib/condor/execute/dir_3197402/ds/sub-926536/label
------------------------------------------------------------------------
22-Oct-2025 02:03:33 - Done 'CAT12: Segmentation'
22-Oct-2025 02:03:33 - Done
Bye for now...
get(ok): sourcedata/raw/sub-926536/anat/sub-926536_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-926536/label/catROI_sub-926536_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-926536/label/catROI_sub-926536_acq-standard_T1w.mat (file)
unlock(ok): sub-926536/mri/it_sub-926536_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-926536/mri/it_sub-926536_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-926536/mri/it_sub-926536_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-926536/mri/it_sub-926536_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-926536/mri/m0wp1sub-926536_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-926536/mri/m0wp1sub-926536_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-926536/mri/mwp1sub-926536_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-926536/mri/mwp1sub-926536_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-926536/mri/p0sub-926536_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-926536/mri/p0sub-926536_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-926536/mri/t_sub-926536_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-926536/mri/t_sub-926536_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-926536/mri/t_sub-926536_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-926536/mri/t_sub-926536_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-926536/mri/wp0sub-926536_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-926536/mri/wp0sub-926536_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-926536/report/cat_sub-926536_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-926536/report/cat_sub-926536_acq-standard_T1w.mat (file)
unlock(ok): sub-926536/report/catreport_sub-926536_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-926536/report/catreport_sub-926536_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197402/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-926536/label/catROI_sub-926536_acq-headmotion2_T1w.mat (file)
add(ok): sub-926536/label/catROI_sub-926536_acq-headmotion2_T1w.xml (file)
add(ok): sub-926536/mri/it_sub-926536_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-926536/mri/it_sub-926536_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-926536/mri/m0wp1sub-926536_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-926536/mri/mwp1sub-926536_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-926536/mri/p0sub-926536_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-926536/mri/t_sub-926536_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-926536/mri/t_sub-926536_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-926536/mri/wp0sub-926536_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-926536/report/cat_sub-926536_acq-headmotion2_T1w.mat (file)
add(ok): sub-926536/report/cat_sub-926536_acq-headmotion2_T1w.xml (file)
add(ok): sub-926536/report/catlog_sub-926536_acq-headmotion2_T1w.txt (file)
add(ok): sub-926536/report/catreport_sub-926536_acq-headmotion2_T1w.pdf (file)
add(ok): sub-926536/label/catROI_sub-926536_acq-headmotion1_T1w.mat (file)
add(ok): sub-926536/label/catROI_sub-926536_acq-standard_T1w.mat (file)
add(ok): sub-926536/mri/it_sub-926536_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-926536/mri/it_sub-926536_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-926536/mri/it_sub-926536_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-926536/mri/it_sub-926536_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-926536/mri/m0wp1sub-926536_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-926536/mri/m0wp1sub-926536_acq-standard_T1w.nii.gz (file)
add(ok): sub-926536/mri/mwp1sub-926536_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-926536/mri/mwp1sub-926536_acq-standard_T1w.nii.gz (file)
add(ok): sub-926536/mri/p0sub-926536_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-926536/mri/p0sub-926536_acq-standard_T1w.nii.gz (file)
add(ok): sub-926536/mri/t_sub-926536_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-926536/mri/t_sub-926536_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-926536/mri/t_sub-926536_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-926536/mri/t_sub-926536_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-926536/mri/wp0sub-926536_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-926536/mri/wp0sub-926536_acq-standard_T1w.nii.gz (file)
add(ok): sub-926536/report/cat_sub-926536_acq-headmotion1_T1w.mat (file)
add(ok): sub-926536/report/cat_sub-926536_acq-standard_T1w.mat (file)
add(ok): sub-926536/report/catreport_sub-926536_acq-headmotion1_T1w.pdf (file)
add(ok): sub-926536/report/catreport_sub-926536_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-926536/label/catROI_sub-926536_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/label/catROI_sub-926536_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/label/catROI_sub-926536_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/it_sub-926536_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/it_sub-926536_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/it_sub-926536_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/it_sub-926536_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/it_sub-926536_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/it_sub-926536_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/m0wp1sub-926536_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/m0wp1sub-926536_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/m0wp1sub-926536_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/mwp1sub-926536_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/mwp1sub-926536_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/mwp1sub-926536_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/p0sub-926536_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/p0sub-926536_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/p0sub-926536_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/t_sub-926536_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/t_sub-926536_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/t_sub-926536_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/t_sub-926536_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/t_sub-926536_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/t_sub-926536_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/wp0sub-926536_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/wp0sub-926536_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-926536/mri/wp0sub-926536_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-926536/report/cat_sub-926536_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/report/cat_sub-926536_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/report/cat_sub-926536_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-926536/report/catreport_sub-926536_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-926536/report/catreport_sub-926536_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-926536/report/catreport_sub-926536_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000542 seconds
flock: executing git
SUCCESS
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