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ds004173-catqc/logs/10071081.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197396/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197396/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197396/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197396/ds/sub-992238/sub-992238_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-992238/sub-992238_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 75s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 7s
Final scaling 8s
51s
Correct center-of-mass 6s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
97s
SPM preprocessing 1 (estimate 2): 78s
SPM preprocessing 2 (write)
Write Segmentation 25s
Update Segmentation 18s
Update Skull-Stripping 51s
Update probability maps 10s
103s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 22s
Fast Optimized Shooting registration 7s
117s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.02) 17s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 28s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
112s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 22s
Ventricle detection 19s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 76s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
147s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 39s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
3s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 15s
ROI estimation of 'neuromorphometrics' atlas 55s
ROI estimation of 'lpba40' atlas 16s
ROI estimation of 'hammers' atlas 39s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 28s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 80s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 135s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 183s
Write results 186s
804s
Quality check 18s
/var/lib/condor/execute/dir_3197396/ds/sub-992238/report/catreport_sub-992238_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 39 second(s).
Image Quality Rating (IQR): 84.37% (B)
GM volume (GMV): 47.91% (762.88 / 1592.38 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197396/ds/sub-992238/mri
Reports are saved in /var/lib/condor/execute/dir_3197396/ds/sub-992238/report
Labels are saved in /var/lib/condor/execute/dir_3197396/ds/sub-992238/label
------------------------------------------------------------------------
22-Oct-2025 01:14:48 - Done 'CAT12: Segmentation'
22-Oct-2025 01:14:48 - Done
Bye for now...
get(ok): sourcedata/raw/sub-992238/anat/sub-992238_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197396/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197396/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-992238/label/catROI_sub-992238_acq-headmotion1_T1w.mat (file)
add(ok): sub-992238/label/catROI_sub-992238_acq-headmotion1_T1w.xml (file)
add(ok): sub-992238/mri/it_sub-992238_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-992238/mri/it_sub-992238_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-992238/mri/m0wp1sub-992238_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992238/mri/mwp1sub-992238_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992238/mri/p0sub-992238_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992238/mri/t_sub-992238_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-992238/mri/t_sub-992238_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-992238/mri/wp0sub-992238_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992238/report/cat_sub-992238_acq-headmotion1_T1w.mat (file)
add(ok): sub-992238/report/cat_sub-992238_acq-headmotion1_T1w.xml (file)
add(ok): sub-992238/report/catlog_sub-992238_acq-headmotion1_T1w.txt (file)
add(ok): sub-992238/report/catreport_sub-992238_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:15:38 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:15:38 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197396/ds/sub-992238/sub-992238_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-992238/sub-992238_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 78s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 6s
Final scaling 7s
50s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
93s
SPM preprocessing 1 (estimate 2): 87s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 18s
Update Skull-Stripping 54s
Update probability maps 10s
106s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 23s
Fast Optimized Shooting registration 10s
117s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 17s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 28s
Intensity transformation 0s
SANLM denoising after LAS (medium) 34s
115s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 22s
Ventricle detection 25s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 97s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
175s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 39s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 6s
Level 1 cleanup (brain masking) 5s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
16s
10s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 18s
ROI estimation of 'neuromorphometrics' atlas 68s
ROI estimation of 'lpba40' atlas 20s
ROI estimation of 'hammers' atlas 48s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 59s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 90s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 84s
Write results 85s
691s
Quality check 16s
/var/lib/condor/execute/dir_3197396/ds/sub-992238/report/catreport_sub-992238_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 19 second(s).
Image Quality Rating (IQR): 82.08% (B-)
GM volume (GMV): 47.43% (752.79 / 1587.30 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197396/ds/sub-992238/mri
Reports are saved in /var/lib/condor/execute/dir_3197396/ds/sub-992238/report
Labels are saved in /var/lib/condor/execute/dir_3197396/ds/sub-992238/label
------------------------------------------------------------------------
22-Oct-2025 01:49:00 - Done 'CAT12: Segmentation'
22-Oct-2025 01:49:00 - Done
Bye for now...
get(ok): sourcedata/raw/sub-992238/anat/sub-992238_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-992238/label/catROI_sub-992238_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-992238/mri/it_sub-992238_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-992238/mri/it_sub-992238_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-992238/mri/m0wp1sub-992238_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-992238/mri/mwp1sub-992238_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-992238/mri/p0sub-992238_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-992238/mri/t_sub-992238_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-992238/mri/t_sub-992238_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-992238/mri/wp0sub-992238_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-992238/report/cat_sub-992238_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-992238/report/catreport_sub-992238_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197396/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-992238/label/catROI_sub-992238_acq-headmotion2_T1w.mat (file)
add(ok): sub-992238/label/catROI_sub-992238_acq-headmotion2_T1w.xml (file)
add(ok): sub-992238/mri/it_sub-992238_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-992238/mri/it_sub-992238_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-992238/mri/m0wp1sub-992238_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992238/mri/mwp1sub-992238_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992238/mri/p0sub-992238_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992238/mri/t_sub-992238_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-992238/mri/t_sub-992238_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-992238/mri/wp0sub-992238_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992238/report/cat_sub-992238_acq-headmotion2_T1w.mat (file)
add(ok): sub-992238/report/cat_sub-992238_acq-headmotion2_T1w.xml (file)
add(ok): sub-992238/report/catlog_sub-992238_acq-headmotion2_T1w.txt (file)
add(ok): sub-992238/report/catreport_sub-992238_acq-headmotion2_T1w.pdf (file)
add(ok): sub-992238/label/catROI_sub-992238_acq-headmotion1_T1w.mat (file)
add(ok): sub-992238/mri/it_sub-992238_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-992238/mri/it_sub-992238_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-992238/mri/m0wp1sub-992238_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992238/mri/mwp1sub-992238_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992238/mri/p0sub-992238_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992238/mri/t_sub-992238_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-992238/mri/t_sub-992238_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-992238/mri/wp0sub-992238_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992238/report/cat_sub-992238_acq-headmotion1_T1w.mat (file)
add(ok): sub-992238/report/catreport_sub-992238_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:49:45 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:49:45 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197396/ds/sub-992238/sub-992238_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-992238/sub-992238_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 79s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
47s
Correct center-of-mass 6s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
88s
SPM preprocessing 1 (estimate 2): 66s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 49s
Update probability maps 9s
99s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 24s
Fast Optimized Shooting registration 11s
116s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.06) 17s
Estimate local tissue thresholds (WM) 24s
Estimate local tissue thresholds (GM) 29s
Intensity transformation 0s
SANLM denoising after LAS (medium) 34s
116s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 22s
Ventricle detection 27s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 100s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
181s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 40s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 6s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 4s
16s
8s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 52s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 37s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 31s
ROI estimation of 'anatomy3' atlas 43s
ROI estimation of 'julichbrain' atlas 45s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 59s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 65s
Write results 67s
476s
Quality check 14s
/var/lib/condor/execute/dir_3197396/ds/sub-992238/report/catreport_sub-992238_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 54 second(s).
Image Quality Rating (IQR): 87.58% (B+)
GM volume (GMV): 49.39% (793.79 / 1607.04 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197396/ds/sub-992238/mri
Reports are saved in /var/lib/condor/execute/dir_3197396/ds/sub-992238/report
Labels are saved in /var/lib/condor/execute/dir_3197396/ds/sub-992238/label
------------------------------------------------------------------------
22-Oct-2025 02:18:42 - Done 'CAT12: Segmentation'
22-Oct-2025 02:18:42 - Done
Bye for now...
get(ok): sourcedata/raw/sub-992238/anat/sub-992238_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-992238/label/catROI_sub-992238_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-992238/label/catROI_sub-992238_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-992238/mri/it_sub-992238_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-992238/mri/it_sub-992238_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-992238/mri/it_sub-992238_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-992238/mri/it_sub-992238_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-992238/mri/m0wp1sub-992238_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-992238/mri/m0wp1sub-992238_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-992238/mri/mwp1sub-992238_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-992238/mri/mwp1sub-992238_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-992238/mri/p0sub-992238_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-992238/mri/p0sub-992238_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-992238/mri/t_sub-992238_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-992238/mri/t_sub-992238_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-992238/mri/t_sub-992238_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-992238/mri/t_sub-992238_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-992238/mri/wp0sub-992238_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-992238/mri/wp0sub-992238_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-992238/report/cat_sub-992238_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-992238/report/cat_sub-992238_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-992238/report/catreport_sub-992238_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-992238/report/catreport_sub-992238_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197396/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-992238/label/catROI_sub-992238_acq-standard_T1w.mat (file)
add(ok): sub-992238/label/catROI_sub-992238_acq-standard_T1w.xml (file)
add(ok): sub-992238/mri/it_sub-992238_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-992238/mri/it_sub-992238_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-992238/mri/m0wp1sub-992238_acq-standard_T1w.nii.gz (file)
add(ok): sub-992238/mri/mwp1sub-992238_acq-standard_T1w.nii.gz (file)
add(ok): sub-992238/mri/p0sub-992238_acq-standard_T1w.nii.gz (file)
add(ok): sub-992238/mri/t_sub-992238_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-992238/mri/t_sub-992238_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-992238/mri/wp0sub-992238_acq-standard_T1w.nii.gz (file)
add(ok): sub-992238/report/cat_sub-992238_acq-standard_T1w.mat (file)
add(ok): sub-992238/report/cat_sub-992238_acq-standard_T1w.xml (file)
add(ok): sub-992238/report/catlog_sub-992238_acq-standard_T1w.txt (file)
add(ok): sub-992238/report/catreport_sub-992238_acq-standard_T1w.pdf (file)
add(ok): sub-992238/label/catROI_sub-992238_acq-headmotion1_T1w.mat (file)
add(ok): sub-992238/label/catROI_sub-992238_acq-headmotion2_T1w.mat (file)
add(ok): sub-992238/mri/it_sub-992238_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-992238/mri/it_sub-992238_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-992238/mri/it_sub-992238_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-992238/mri/it_sub-992238_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-992238/mri/m0wp1sub-992238_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992238/mri/m0wp1sub-992238_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992238/mri/mwp1sub-992238_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992238/mri/mwp1sub-992238_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992238/mri/p0sub-992238_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992238/mri/p0sub-992238_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992238/mri/t_sub-992238_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-992238/mri/t_sub-992238_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-992238/mri/t_sub-992238_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-992238/mri/t_sub-992238_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-992238/mri/wp0sub-992238_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-992238/mri/wp0sub-992238_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-992238/report/cat_sub-992238_acq-headmotion1_T1w.mat (file)
add(ok): sub-992238/report/cat_sub-992238_acq-headmotion2_T1w.mat (file)
add(ok): sub-992238/report/catreport_sub-992238_acq-headmotion1_T1w.pdf (file)
add(ok): sub-992238/report/catreport_sub-992238_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-992238/label/catROI_sub-992238_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/label/catROI_sub-992238_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/label/catROI_sub-992238_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/it_sub-992238_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/it_sub-992238_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/it_sub-992238_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/it_sub-992238_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/it_sub-992238_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/it_sub-992238_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/m0wp1sub-992238_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/m0wp1sub-992238_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/m0wp1sub-992238_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/mwp1sub-992238_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/mwp1sub-992238_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/mwp1sub-992238_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/p0sub-992238_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/p0sub-992238_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/p0sub-992238_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/t_sub-992238_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/t_sub-992238_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/t_sub-992238_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/t_sub-992238_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/t_sub-992238_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/t_sub-992238_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/wp0sub-992238_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/wp0sub-992238_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992238/mri/wp0sub-992238_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-992238/report/cat_sub-992238_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/report/cat_sub-992238_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/report/cat_sub-992238_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-992238/report/catreport_sub-992238_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-992238/report/catreport_sub-992238_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-992238/report/catreport_sub-992238_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000028 seconds
flock: executing git
SUCCESS
View git blame Copy permalink