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ds004173-catqc/logs/10071078.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197362/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197362/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197362/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197362/ds/sub-986786/sub-986786_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-986786/sub-986786_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 74s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 6s
Final scaling 7s
50s
Correct center-of-mass 7s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
96s
SPM preprocessing 1 (estimate 2): 71s
SPM preprocessing 2 (write)
Write Segmentation 25s
Update Segmentation 18s
Update Skull-Stripping 52s
Update probability maps 10s
105s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 20s
Fast Optimized Shooting registration 10s
120s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 17s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
109s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 20s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 70s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
140s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 56s
ROI estimation of 'lpba40' atlas 16s
ROI estimation of 'hammers' atlas 39s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 27s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 81s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 137s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 184s
Write results 188s
805s
Quality check 18s
/var/lib/condor/execute/dir_3197362/ds/sub-986786/report/catreport_sub-986786_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 31 second(s).
Image Quality Rating (IQR): 87.94% (B+)
GM volume (GMV): 47.42% (732.96 / 1545.69 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197362/ds/sub-986786/mri
Reports are saved in /var/lib/condor/execute/dir_3197362/ds/sub-986786/report
Labels are saved in /var/lib/condor/execute/dir_3197362/ds/sub-986786/label
------------------------------------------------------------------------
22-Oct-2025 01:14:40 - Done 'CAT12: Segmentation'
22-Oct-2025 01:14:40 - Done
Bye for now...
get(ok): sourcedata/raw/sub-986786/anat/sub-986786_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197362/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197362/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-986786/label/catROI_sub-986786_acq-headmotion1_T1w.mat (file)
add(ok): sub-986786/label/catROI_sub-986786_acq-headmotion1_T1w.xml (file)
add(ok): sub-986786/mri/it_sub-986786_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-986786/mri/it_sub-986786_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-986786/mri/m0wp1sub-986786_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-986786/mri/mwp1sub-986786_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-986786/mri/p0sub-986786_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-986786/mri/t_sub-986786_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-986786/mri/t_sub-986786_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-986786/mri/wp0sub-986786_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-986786/report/cat_sub-986786_acq-headmotion1_T1w.mat (file)
add(ok): sub-986786/report/cat_sub-986786_acq-headmotion1_T1w.xml (file)
add(ok): sub-986786/report/catlog_sub-986786_acq-headmotion1_T1w.txt (file)
add(ok): sub-986786/report/catreport_sub-986786_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:15:29 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:15:30 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197362/ds/sub-986786/sub-986786_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-986786/sub-986786_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 75s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 6s
Final scaling 8s
49s
Correct center-of-mass 7s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
85s
SPM preprocessing 1 (estimate 2): 71s
SPM preprocessing 2 (write)
Write Segmentation 25s
Update Segmentation 17s
Update Skull-Stripping 50s
Update probability maps 10s
102s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 12s
119s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 17s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 28s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
111s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 22s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 74s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
147s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 39s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 6s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 4s
15s
3s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 12s
ROI estimation of 'neuromorphometrics' atlas 45s
ROI estimation of 'lpba40' atlas 13s
ROI estimation of 'hammers' atlas 32s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 61s
ROI estimation of 'julichbrain' atlas 81s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 133s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 139s
Write results 141s
731s
Quality check 17s
/var/lib/condor/execute/dir_3197362/ds/sub-986786/report/catreport_sub-986786_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 32 minute(s) and 12 second(s).
Image Quality Rating (IQR): 87.14% (B+)
GM volume (GMV): 47.48% (733.93 / 1545.77 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197362/ds/sub-986786/mri
Reports are saved in /var/lib/condor/execute/dir_3197362/ds/sub-986786/report
Labels are saved in /var/lib/condor/execute/dir_3197362/ds/sub-986786/label
------------------------------------------------------------------------
22-Oct-2025 01:47:45 - Done 'CAT12: Segmentation'
22-Oct-2025 01:47:45 - Done
Bye for now...
get(ok): sourcedata/raw/sub-986786/anat/sub-986786_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-986786/label/catROI_sub-986786_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-986786/mri/it_sub-986786_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-986786/mri/it_sub-986786_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-986786/mri/m0wp1sub-986786_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-986786/mri/mwp1sub-986786_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-986786/mri/p0sub-986786_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-986786/mri/t_sub-986786_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-986786/mri/t_sub-986786_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-986786/mri/wp0sub-986786_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-986786/report/cat_sub-986786_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-986786/report/catreport_sub-986786_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197362/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-986786/label/catROI_sub-986786_acq-standard_T1w.mat (file)
add(ok): sub-986786/label/catROI_sub-986786_acq-standard_T1w.xml (file)
add(ok): sub-986786/mri/it_sub-986786_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-986786/mri/it_sub-986786_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-986786/mri/m0wp1sub-986786_acq-standard_T1w.nii.gz (file)
add(ok): sub-986786/mri/mwp1sub-986786_acq-standard_T1w.nii.gz (file)
add(ok): sub-986786/mri/p0sub-986786_acq-standard_T1w.nii.gz (file)
add(ok): sub-986786/mri/t_sub-986786_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-986786/mri/t_sub-986786_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-986786/mri/wp0sub-986786_acq-standard_T1w.nii.gz (file)
add(ok): sub-986786/report/cat_sub-986786_acq-standard_T1w.mat (file)
add(ok): sub-986786/report/cat_sub-986786_acq-standard_T1w.xml (file)
add(ok): sub-986786/report/catlog_sub-986786_acq-standard_T1w.txt (file)
add(ok): sub-986786/report/catreport_sub-986786_acq-standard_T1w.pdf (file)
add(ok): sub-986786/label/catROI_sub-986786_acq-headmotion1_T1w.mat (file)
add(ok): sub-986786/mri/it_sub-986786_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-986786/mri/it_sub-986786_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-986786/mri/m0wp1sub-986786_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-986786/mri/mwp1sub-986786_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-986786/mri/p0sub-986786_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-986786/mri/t_sub-986786_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-986786/mri/t_sub-986786_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-986786/mri/wp0sub-986786_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-986786/report/cat_sub-986786_acq-headmotion1_T1w.mat (file)
add(ok): sub-986786/report/catreport_sub-986786_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:48:38 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:48:38 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197362/ds/sub-986786/sub-986786_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-986786/sub-986786_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 74s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 6s
Final scaling 7s
48s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 67s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 48s
Update probability maps 9s
98s
Global intensity correction 17s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 9s
113s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
107s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 20s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 69s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
140s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 41s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 30s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 18s
ROI estimation of 'mori' atlas 25s
ROI estimation of 'anatomy3' atlas 38s
ROI estimation of 'julichbrain' atlas 60s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 47s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 95s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 107s
Write results 109s
542s
Quality check 14s
/var/lib/condor/execute/dir_3197362/ds/sub-986786/report/catreport_sub-986786_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 4 second(s).
Image Quality Rating (IQR): 87.76% (B+)
GM volume (GMV): 47.03% (726.09 / 1543.73 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197362/ds/sub-986786/mri
Reports are saved in /var/lib/condor/execute/dir_3197362/ds/sub-986786/report
Labels are saved in /var/lib/condor/execute/dir_3197362/ds/sub-986786/label
------------------------------------------------------------------------
22-Oct-2025 02:16:46 - Done 'CAT12: Segmentation'
22-Oct-2025 02:16:46 - Done
Bye for now...
get(ok): sourcedata/raw/sub-986786/anat/sub-986786_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-986786/label/catROI_sub-986786_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-986786/label/catROI_sub-986786_acq-standard_T1w.mat (file)
unlock(ok): sub-986786/mri/it_sub-986786_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-986786/mri/it_sub-986786_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-986786/mri/it_sub-986786_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-986786/mri/it_sub-986786_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-986786/mri/m0wp1sub-986786_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-986786/mri/m0wp1sub-986786_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-986786/mri/mwp1sub-986786_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-986786/mri/mwp1sub-986786_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-986786/mri/p0sub-986786_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-986786/mri/p0sub-986786_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-986786/mri/t_sub-986786_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-986786/mri/t_sub-986786_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-986786/mri/t_sub-986786_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-986786/mri/t_sub-986786_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-986786/mri/wp0sub-986786_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-986786/mri/wp0sub-986786_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-986786/report/cat_sub-986786_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-986786/report/cat_sub-986786_acq-standard_T1w.mat (file)
unlock(ok): sub-986786/report/catreport_sub-986786_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-986786/report/catreport_sub-986786_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197362/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-986786/label/catROI_sub-986786_acq-headmotion2_T1w.mat (file)
add(ok): sub-986786/label/catROI_sub-986786_acq-headmotion2_T1w.xml (file)
add(ok): sub-986786/mri/it_sub-986786_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-986786/mri/it_sub-986786_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-986786/mri/m0wp1sub-986786_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-986786/mri/mwp1sub-986786_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-986786/mri/p0sub-986786_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-986786/mri/t_sub-986786_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-986786/mri/t_sub-986786_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-986786/mri/wp0sub-986786_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-986786/report/cat_sub-986786_acq-headmotion2_T1w.mat (file)
add(ok): sub-986786/report/cat_sub-986786_acq-headmotion2_T1w.xml (file)
add(ok): sub-986786/report/catlog_sub-986786_acq-headmotion2_T1w.txt (file)
add(ok): sub-986786/report/catreport_sub-986786_acq-headmotion2_T1w.pdf (file)
add(ok): sub-986786/label/catROI_sub-986786_acq-headmotion1_T1w.mat (file)
add(ok): sub-986786/label/catROI_sub-986786_acq-standard_T1w.mat (file)
add(ok): sub-986786/mri/it_sub-986786_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-986786/mri/it_sub-986786_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-986786/mri/it_sub-986786_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-986786/mri/it_sub-986786_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-986786/mri/m0wp1sub-986786_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-986786/mri/m0wp1sub-986786_acq-standard_T1w.nii.gz (file)
add(ok): sub-986786/mri/mwp1sub-986786_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-986786/mri/mwp1sub-986786_acq-standard_T1w.nii.gz (file)
add(ok): sub-986786/mri/p0sub-986786_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-986786/mri/p0sub-986786_acq-standard_T1w.nii.gz (file)
add(ok): sub-986786/mri/t_sub-986786_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-986786/mri/t_sub-986786_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-986786/mri/t_sub-986786_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-986786/mri/t_sub-986786_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-986786/mri/wp0sub-986786_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-986786/mri/wp0sub-986786_acq-standard_T1w.nii.gz (file)
add(ok): sub-986786/report/cat_sub-986786_acq-headmotion1_T1w.mat (file)
add(ok): sub-986786/report/cat_sub-986786_acq-standard_T1w.mat (file)
add(ok): sub-986786/report/catreport_sub-986786_acq-headmotion1_T1w.pdf (file)
add(ok): sub-986786/report/catreport_sub-986786_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-986786/label/catROI_sub-986786_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/label/catROI_sub-986786_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/label/catROI_sub-986786_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/it_sub-986786_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/it_sub-986786_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/it_sub-986786_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/it_sub-986786_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/it_sub-986786_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/it_sub-986786_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/m0wp1sub-986786_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/m0wp1sub-986786_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/m0wp1sub-986786_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/mwp1sub-986786_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/mwp1sub-986786_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/mwp1sub-986786_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/p0sub-986786_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/p0sub-986786_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/p0sub-986786_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/t_sub-986786_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/t_sub-986786_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/t_sub-986786_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/t_sub-986786_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/t_sub-986786_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/t_sub-986786_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/wp0sub-986786_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/wp0sub-986786_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-986786/mri/wp0sub-986786_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-986786/report/cat_sub-986786_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/report/cat_sub-986786_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/report/cat_sub-986786_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-986786/report/catreport_sub-986786_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-986786/report/catreport_sub-986786_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-986786/report/catreport_sub-986786_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000061 seconds
flock: executing git
SUCCESS
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