f.hoffstaedter/ds004173-catqc
1
0
Fork 0
Code Pull requests Packages Activity
ds004173-catqc/logs/10071077.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

597 lines
37 KiB (Stored with Git Annex)
Text
Raw Permalink Blame History

This file contains invisible Unicode characters

This file contains invisible Unicode characters that are indistinguishable to humans but may be processed differently by a computer. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

install(ok): /var/lib/condor/execute/dir_3197359/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197359/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197359/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:06 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197359/ds/sub-282628/sub-282628_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-282628/sub-282628_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 70s
Affine preprocessing (APP)
Initialize 9s
Estimate background 9s
Initial correction 7s
Refine background 5s
Final correction 6s
Final scaling 8s
51s
Correct center-of-mass 7s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
94s
SPM preprocessing 1 (estimate 2): 70s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 49s
Update probability maps 10s
99s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 11s
123s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.02) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 25s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
104s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 19s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 65s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
128s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 43s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 46s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 28s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 60s
ROI estimation of 'julichbrain' atlas 81s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 33s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 66s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 129s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 196s
Write results 201s
799s
Quality check 19s
/var/lib/condor/execute/dir_3197359/ds/sub-282628/report/catreport_sub-282628_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 6 second(s).
Image Quality Rating (IQR): 85.43% (B)
GM volume (GMV): 45.48% (613.30 / 1348.50 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197359/ds/sub-282628/mri
Reports are saved in /var/lib/condor/execute/dir_3197359/ds/sub-282628/report
Labels are saved in /var/lib/condor/execute/dir_3197359/ds/sub-282628/label
------------------------------------------------------------------------
22-Oct-2025 01:14:16 - Done 'CAT12: Segmentation'
22-Oct-2025 01:14:16 - Done
Bye for now...
get(ok): sourcedata/raw/sub-282628/anat/sub-282628_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197359/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197359/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-282628/label/catROI_sub-282628_acq-headmotion1_T1w.mat (file)
add(ok): sub-282628/label/catROI_sub-282628_acq-headmotion1_T1w.xml (file)
add(ok): sub-282628/mri/it_sub-282628_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-282628/mri/it_sub-282628_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-282628/mri/m0wp1sub-282628_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-282628/mri/mwp1sub-282628_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-282628/mri/p0sub-282628_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-282628/mri/t_sub-282628_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-282628/mri/t_sub-282628_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-282628/mri/wp0sub-282628_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-282628/report/cat_sub-282628_acq-headmotion1_T1w.mat (file)
add(ok): sub-282628/report/cat_sub-282628_acq-headmotion1_T1w.xml (file)
add(ok): sub-282628/report/catlog_sub-282628_acq-headmotion1_T1w.txt (file)
add(ok): sub-282628/report/catreport_sub-282628_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:15:15 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:15:15 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197359/ds/sub-282628/sub-282628_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-282628/sub-282628_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 75s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
48s
Correct center-of-mass 7s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
88s
SPM preprocessing 1 (estimate 2): 65s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 17s
Update Skull-Stripping 49s
Update probability maps 10s
99s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 12s
122s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 15s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 30s
105s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 20s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 66s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
132s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 43s
ROI estimation of 'lpba40' atlas 13s
ROI estimation of 'hammers' atlas 30s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 24s
ROI estimation of 'mori' atlas 41s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 35s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 69s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 139s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 196s
Write results 201s
786s
Quality check 18s
/var/lib/condor/execute/dir_3197359/ds/sub-282628/report/catreport_sub-282628_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 32 minute(s) and 48 second(s).
Image Quality Rating (IQR): 87.86% (B+)
GM volume (GMV): 46.80% (635.91 / 1358.90 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197359/ds/sub-282628/mri
Reports are saved in /var/lib/condor/execute/dir_3197359/ds/sub-282628/report
Labels are saved in /var/lib/condor/execute/dir_3197359/ds/sub-282628/label
------------------------------------------------------------------------
22-Oct-2025 01:48:06 - Done 'CAT12: Segmentation'
22-Oct-2025 01:48:06 - Done
Bye for now...
get(ok): sourcedata/raw/sub-282628/anat/sub-282628_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-282628/label/catROI_sub-282628_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-282628/mri/it_sub-282628_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-282628/mri/it_sub-282628_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-282628/mri/m0wp1sub-282628_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-282628/mri/mwp1sub-282628_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-282628/mri/p0sub-282628_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-282628/mri/t_sub-282628_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-282628/mri/t_sub-282628_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-282628/mri/wp0sub-282628_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-282628/report/cat_sub-282628_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-282628/report/catreport_sub-282628_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197359/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-282628/label/catROI_sub-282628_acq-standard_T1w.mat (file)
add(ok): sub-282628/label/catROI_sub-282628_acq-standard_T1w.xml (file)
add(ok): sub-282628/mri/it_sub-282628_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-282628/mri/it_sub-282628_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-282628/mri/m0wp1sub-282628_acq-standard_T1w.nii.gz (file)
add(ok): sub-282628/mri/mwp1sub-282628_acq-standard_T1w.nii.gz (file)
add(ok): sub-282628/mri/p0sub-282628_acq-standard_T1w.nii.gz (file)
add(ok): sub-282628/mri/t_sub-282628_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-282628/mri/t_sub-282628_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-282628/mri/wp0sub-282628_acq-standard_T1w.nii.gz (file)
add(ok): sub-282628/report/cat_sub-282628_acq-standard_T1w.mat (file)
add(ok): sub-282628/report/cat_sub-282628_acq-standard_T1w.xml (file)
add(ok): sub-282628/report/catlog_sub-282628_acq-standard_T1w.txt (file)
add(ok): sub-282628/report/catreport_sub-282628_acq-standard_T1w.pdf (file)
add(ok): sub-282628/label/catROI_sub-282628_acq-headmotion1_T1w.mat (file)
add(ok): sub-282628/mri/it_sub-282628_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-282628/mri/it_sub-282628_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-282628/mri/m0wp1sub-282628_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-282628/mri/mwp1sub-282628_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-282628/mri/p0sub-282628_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-282628/mri/t_sub-282628_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-282628/mri/t_sub-282628_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-282628/mri/wp0sub-282628_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-282628/report/cat_sub-282628_acq-headmotion1_T1w.mat (file)
add(ok): sub-282628/report/catreport_sub-282628_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:49:10 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:49:10 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197359/ds/sub-282628/sub-282628_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-282628/sub-282628_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 72s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
48s
Correct center-of-mass 5s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
87s
SPM preprocessing 1 (estimate 2): 66s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 16s
Update Skull-Stripping 46s
Update probability maps 10s
96s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 12s
120s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
104s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 18s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 84s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
146s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 34s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.06]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 12s
ROI estimation of 'neuromorphometrics' atlas 46s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 37s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 28s
ROI estimation of 'mori' atlas 40s
ROI estimation of 'anatomy3' atlas 60s
ROI estimation of 'julichbrain' atlas 79s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 62s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 111s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 132s
Write results 135s
699s
Quality check 14s
/var/lib/condor/execute/dir_3197359/ds/sub-282628/report/catreport_sub-282628_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 30 second(s).
Image Quality Rating (IQR): 86.74% (B+)
GM volume (GMV): 45.31% (593.44 / 1309.63 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197359/ds/sub-282628/mri
Reports are saved in /var/lib/condor/execute/dir_3197359/ds/sub-282628/report
Labels are saved in /var/lib/condor/execute/dir_3197359/ds/sub-282628/label
------------------------------------------------------------------------
22-Oct-2025 02:20:43 - Done 'CAT12: Segmentation'
22-Oct-2025 02:20:43 - Done
Bye for now...
get(ok): sourcedata/raw/sub-282628/anat/sub-282628_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-282628/label/catROI_sub-282628_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-282628/label/catROI_sub-282628_acq-standard_T1w.mat (file)
unlock(ok): sub-282628/mri/it_sub-282628_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-282628/mri/it_sub-282628_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-282628/mri/it_sub-282628_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-282628/mri/it_sub-282628_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-282628/mri/m0wp1sub-282628_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-282628/mri/m0wp1sub-282628_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-282628/mri/mwp1sub-282628_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-282628/mri/mwp1sub-282628_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-282628/mri/p0sub-282628_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-282628/mri/p0sub-282628_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-282628/mri/t_sub-282628_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-282628/mri/t_sub-282628_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-282628/mri/t_sub-282628_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-282628/mri/t_sub-282628_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-282628/mri/wp0sub-282628_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-282628/mri/wp0sub-282628_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-282628/report/cat_sub-282628_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-282628/report/cat_sub-282628_acq-standard_T1w.mat (file)
unlock(ok): sub-282628/report/catreport_sub-282628_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-282628/report/catreport_sub-282628_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197359/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-282628/label/catROI_sub-282628_acq-headmotion2_T1w.mat (file)
add(ok): sub-282628/label/catROI_sub-282628_acq-headmotion2_T1w.xml (file)
add(ok): sub-282628/mri/it_sub-282628_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-282628/mri/it_sub-282628_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-282628/mri/m0wp1sub-282628_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-282628/mri/mwp1sub-282628_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-282628/mri/p0sub-282628_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-282628/mri/t_sub-282628_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-282628/mri/t_sub-282628_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-282628/mri/wp0sub-282628_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-282628/report/cat_sub-282628_acq-headmotion2_T1w.mat (file)
add(ok): sub-282628/report/cat_sub-282628_acq-headmotion2_T1w.xml (file)
add(ok): sub-282628/report/catlog_sub-282628_acq-headmotion2_T1w.txt (file)
add(ok): sub-282628/report/catreport_sub-282628_acq-headmotion2_T1w.pdf (file)
add(ok): sub-282628/label/catROI_sub-282628_acq-headmotion1_T1w.mat (file)
add(ok): sub-282628/label/catROI_sub-282628_acq-standard_T1w.mat (file)
add(ok): sub-282628/mri/it_sub-282628_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-282628/mri/it_sub-282628_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-282628/mri/it_sub-282628_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-282628/mri/it_sub-282628_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-282628/mri/m0wp1sub-282628_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-282628/mri/m0wp1sub-282628_acq-standard_T1w.nii.gz (file)
add(ok): sub-282628/mri/mwp1sub-282628_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-282628/mri/mwp1sub-282628_acq-standard_T1w.nii.gz (file)
add(ok): sub-282628/mri/p0sub-282628_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-282628/mri/p0sub-282628_acq-standard_T1w.nii.gz (file)
add(ok): sub-282628/mri/t_sub-282628_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-282628/mri/t_sub-282628_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-282628/mri/t_sub-282628_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-282628/mri/t_sub-282628_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-282628/mri/wp0sub-282628_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-282628/mri/wp0sub-282628_acq-standard_T1w.nii.gz (file)
add(ok): sub-282628/report/cat_sub-282628_acq-headmotion1_T1w.mat (file)
add(ok): sub-282628/report/cat_sub-282628_acq-standard_T1w.mat (file)
add(ok): sub-282628/report/catreport_sub-282628_acq-headmotion1_T1w.pdf (file)
add(ok): sub-282628/report/catreport_sub-282628_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-282628/label/catROI_sub-282628_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/label/catROI_sub-282628_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/label/catROI_sub-282628_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/it_sub-282628_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/it_sub-282628_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/it_sub-282628_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/it_sub-282628_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/it_sub-282628_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/it_sub-282628_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/m0wp1sub-282628_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/m0wp1sub-282628_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/m0wp1sub-282628_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/mwp1sub-282628_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/mwp1sub-282628_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/mwp1sub-282628_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/p0sub-282628_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/p0sub-282628_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/p0sub-282628_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/t_sub-282628_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/t_sub-282628_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/t_sub-282628_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/t_sub-282628_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/t_sub-282628_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/t_sub-282628_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/wp0sub-282628_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/wp0sub-282628_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-282628/mri/wp0sub-282628_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-282628/report/cat_sub-282628_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/report/cat_sub-282628_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/report/cat_sub-282628_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-282628/report/catreport_sub-282628_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-282628/report/catreport_sub-282628_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-282628/report/catreport_sub-282628_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000059 seconds
flock: executing git
SUCCESS
View git blame Copy permalink