f.hoffstaedter/ds004173-catqc
1
0
Fork 0
Code Pull requests Packages Activity
ds004173-catqc/logs/10071074.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

600 lines
37 KiB (Stored with Git Annex)
Text
Raw Permalink Blame History

This file contains invisible Unicode characters

This file contains invisible Unicode characters that are indistinguishable to humans but may be processed differently by a computer. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

install(ok): /var/lib/condor/execute/dir_3197347/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197347/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197347/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:08 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197347/ds/sub-672229/sub-672229_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-672229/sub-672229_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 66s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
48s
Correct center-of-mass 8s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
7s
Use initial fine affine registration. 81s
SPM preprocessing 1 (estimate 2): 74s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 48s
Update probability maps 10s
98s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 10s
123s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.07) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
101s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 17s
Ventricle detection 20s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 67s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
130s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 12s
ROI estimation of 'neuromorphometrics' atlas 42s
ROI estimation of 'lpba40' atlas 17s
ROI estimation of 'hammers' atlas 49s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 63s
ROI estimation of 'julichbrain' atlas 85s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 36s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 142s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 195s
Write results 199s
831s
Quality check 18s
/var/lib/condor/execute/dir_3197347/ds/sub-672229/report/catreport_sub-672229_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 12 second(s).
Image Quality Rating (IQR): 82.47% (B-)
GM volume (GMV): 45.90% (615.50 / 1341.10 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197347/ds/sub-672229/mri
Reports are saved in /var/lib/condor/execute/dir_3197347/ds/sub-672229/report
Labels are saved in /var/lib/condor/execute/dir_3197347/ds/sub-672229/label
------------------------------------------------------------------------
22-Oct-2025 01:14:23 - Done 'CAT12: Segmentation'
22-Oct-2025 01:14:23 - Done
Bye for now...
get(ok): sourcedata/raw/sub-672229/anat/sub-672229_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197347/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197347/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-672229/label/catROI_sub-672229_acq-headmotion2_T1w.mat (file)
add(ok): sub-672229/label/catROI_sub-672229_acq-headmotion2_T1w.xml (file)
add(ok): sub-672229/mri/it_sub-672229_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-672229/mri/it_sub-672229_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-672229/mri/m0wp1sub-672229_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-672229/mri/mwp1sub-672229_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-672229/mri/p0sub-672229_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-672229/mri/t_sub-672229_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-672229/mri/t_sub-672229_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-672229/mri/wp0sub-672229_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-672229/report/cat_sub-672229_acq-headmotion2_T1w.mat (file)
add(ok): sub-672229/report/cat_sub-672229_acq-headmotion2_T1w.xml (file)
add(ok): sub-672229/report/catlog_sub-672229_acq-headmotion2_T1w.txt (file)
add(ok): sub-672229/report/catreport_sub-672229_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:15:20 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:15:21 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197347/ds/sub-672229/sub-672229_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-672229/sub-672229_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 68s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
46s
Correct center-of-mass 7s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
10s
Use initial fine affine registration. 80s
SPM preprocessing 1 (estimate 2): 75s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 48s
Update probability maps 10s
99s
Global intensity correction 19s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 9s
119s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.14) 15s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 29s
104s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 20s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 80s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
146s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
7s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 12s
ROI estimation of 'neuromorphometrics' atlas 43s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 31s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 27s
ROI estimation of 'mori' atlas 42s
ROI estimation of 'anatomy3' atlas 60s
ROI estimation of 'julichbrain' atlas 81s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 139s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 189s
Write results 192s
784s
Quality check 17s
/var/lib/condor/execute/dir_3197347/ds/sub-672229/report/catreport_sub-672229_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 32 minute(s) and 57 second(s).
Image Quality Rating (IQR): 87.89% (B+)
GM volume (GMV): 47.30% (646.83 / 1367.46 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197347/ds/sub-672229/mri
Reports are saved in /var/lib/condor/execute/dir_3197347/ds/sub-672229/report
Labels are saved in /var/lib/condor/execute/dir_3197347/ds/sub-672229/label
------------------------------------------------------------------------
22-Oct-2025 01:48:20 - Done 'CAT12: Segmentation'
22-Oct-2025 01:48:20 - Done
Bye for now...
get(ok): sourcedata/raw/sub-672229/anat/sub-672229_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-672229/label/catROI_sub-672229_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-672229/mri/it_sub-672229_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-672229/mri/it_sub-672229_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-672229/mri/m0wp1sub-672229_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-672229/mri/mwp1sub-672229_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-672229/mri/p0sub-672229_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-672229/mri/t_sub-672229_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-672229/mri/t_sub-672229_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-672229/mri/wp0sub-672229_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-672229/report/cat_sub-672229_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-672229/report/catreport_sub-672229_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197347/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-672229/label/catROI_sub-672229_acq-standard_T1w.mat (file)
add(ok): sub-672229/label/catROI_sub-672229_acq-standard_T1w.xml (file)
add(ok): sub-672229/mri/it_sub-672229_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-672229/mri/it_sub-672229_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-672229/mri/m0wp1sub-672229_acq-standard_T1w.nii.gz (file)
add(ok): sub-672229/mri/mwp1sub-672229_acq-standard_T1w.nii.gz (file)
add(ok): sub-672229/mri/p0sub-672229_acq-standard_T1w.nii.gz (file)
add(ok): sub-672229/mri/t_sub-672229_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-672229/mri/t_sub-672229_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-672229/mri/wp0sub-672229_acq-standard_T1w.nii.gz (file)
add(ok): sub-672229/report/cat_sub-672229_acq-standard_T1w.mat (file)
add(ok): sub-672229/report/cat_sub-672229_acq-standard_T1w.xml (file)
add(ok): sub-672229/report/catlog_sub-672229_acq-standard_T1w.txt (file)
add(ok): sub-672229/report/catreport_sub-672229_acq-standard_T1w.pdf (file)
add(ok): sub-672229/label/catROI_sub-672229_acq-headmotion2_T1w.mat (file)
add(ok): sub-672229/mri/it_sub-672229_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-672229/mri/it_sub-672229_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-672229/mri/m0wp1sub-672229_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-672229/mri/mwp1sub-672229_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-672229/mri/p0sub-672229_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-672229/mri/t_sub-672229_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-672229/mri/t_sub-672229_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-672229/mri/wp0sub-672229_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-672229/report/cat_sub-672229_acq-headmotion2_T1w.mat (file)
add(ok): sub-672229/report/catreport_sub-672229_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:49:20 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:49:20 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197347/ds/sub-672229/sub-672229_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-672229/sub-672229_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
45s
Correct center-of-mass 7s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
10s
Use initial fine affine registration. 73s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 23s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
95s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 18s
Fast Optimized Shooting registration 10s
119s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.04) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 26s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
99s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 18s
Ventricle detection 17s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 61s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
122s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 35s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 37s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 29s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 22s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 51s
ROI estimation of 'julichbrain' atlas 77s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 64s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 122s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 159s
Write results 163s
688s
Quality check 16s
/var/lib/condor/execute/dir_3197347/ds/sub-672229/report/catreport_sub-672229_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 9 second(s).
Image Quality Rating (IQR): 87.42% (B+)
GM volume (GMV): 46.99% (635.35 / 1352.05 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197347/ds/sub-672229/mri
Reports are saved in /var/lib/condor/execute/dir_3197347/ds/sub-672229/report
Labels are saved in /var/lib/condor/execute/dir_3197347/ds/sub-672229/label
------------------------------------------------------------------------
22-Oct-2025 02:19:32 - Done 'CAT12: Segmentation'
22-Oct-2025 02:19:32 - Done
Bye for now...
get(ok): sourcedata/raw/sub-672229/anat/sub-672229_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-672229/label/catROI_sub-672229_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-672229/label/catROI_sub-672229_acq-standard_T1w.mat (file)
unlock(ok): sub-672229/mri/it_sub-672229_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-672229/mri/it_sub-672229_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-672229/mri/it_sub-672229_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-672229/mri/it_sub-672229_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-672229/mri/m0wp1sub-672229_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-672229/mri/m0wp1sub-672229_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-672229/mri/mwp1sub-672229_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-672229/mri/mwp1sub-672229_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-672229/mri/p0sub-672229_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-672229/mri/p0sub-672229_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-672229/mri/t_sub-672229_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-672229/mri/t_sub-672229_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-672229/mri/t_sub-672229_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-672229/mri/t_sub-672229_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-672229/mri/wp0sub-672229_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-672229/mri/wp0sub-672229_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-672229/report/cat_sub-672229_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-672229/report/cat_sub-672229_acq-standard_T1w.mat (file)
unlock(ok): sub-672229/report/catreport_sub-672229_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-672229/report/catreport_sub-672229_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197347/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-672229/label/catROI_sub-672229_acq-headmotion1_T1w.mat (file)
add(ok): sub-672229/label/catROI_sub-672229_acq-headmotion1_T1w.xml (file)
add(ok): sub-672229/mri/it_sub-672229_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-672229/mri/it_sub-672229_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-672229/mri/m0wp1sub-672229_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-672229/mri/mwp1sub-672229_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-672229/mri/p0sub-672229_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-672229/mri/t_sub-672229_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-672229/mri/t_sub-672229_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-672229/mri/wp0sub-672229_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-672229/report/cat_sub-672229_acq-headmotion1_T1w.mat (file)
add(ok): sub-672229/report/cat_sub-672229_acq-headmotion1_T1w.xml (file)
add(ok): sub-672229/report/catlog_sub-672229_acq-headmotion1_T1w.txt (file)
add(ok): sub-672229/report/catreport_sub-672229_acq-headmotion1_T1w.pdf (file)
add(ok): sub-672229/label/catROI_sub-672229_acq-headmotion2_T1w.mat (file)
add(ok): sub-672229/label/catROI_sub-672229_acq-standard_T1w.mat (file)
add(ok): sub-672229/mri/it_sub-672229_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-672229/mri/it_sub-672229_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-672229/mri/it_sub-672229_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-672229/mri/it_sub-672229_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-672229/mri/m0wp1sub-672229_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-672229/mri/m0wp1sub-672229_acq-standard_T1w.nii.gz (file)
add(ok): sub-672229/mri/mwp1sub-672229_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-672229/mri/mwp1sub-672229_acq-standard_T1w.nii.gz (file)
add(ok): sub-672229/mri/p0sub-672229_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-672229/mri/p0sub-672229_acq-standard_T1w.nii.gz (file)
add(ok): sub-672229/mri/t_sub-672229_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-672229/mri/t_sub-672229_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-672229/mri/t_sub-672229_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-672229/mri/t_sub-672229_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-672229/mri/wp0sub-672229_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-672229/mri/wp0sub-672229_acq-standard_T1w.nii.gz (file)
add(ok): sub-672229/report/cat_sub-672229_acq-headmotion2_T1w.mat (file)
add(ok): sub-672229/report/cat_sub-672229_acq-standard_T1w.mat (file)
add(ok): sub-672229/report/catreport_sub-672229_acq-headmotion2_T1w.pdf (file)
add(ok): sub-672229/report/catreport_sub-672229_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-672229/label/catROI_sub-672229_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/label/catROI_sub-672229_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/label/catROI_sub-672229_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/it_sub-672229_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/it_sub-672229_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/it_sub-672229_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/it_sub-672229_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/it_sub-672229_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/it_sub-672229_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/m0wp1sub-672229_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/m0wp1sub-672229_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/m0wp1sub-672229_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/mwp1sub-672229_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/mwp1sub-672229_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/mwp1sub-672229_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/p0sub-672229_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/p0sub-672229_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/p0sub-672229_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/t_sub-672229_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/t_sub-672229_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/t_sub-672229_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/t_sub-672229_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/t_sub-672229_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/t_sub-672229_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/wp0sub-672229_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/wp0sub-672229_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-672229/mri/wp0sub-672229_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-672229/report/cat_sub-672229_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/report/cat_sub-672229_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/report/cat_sub-672229_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-672229/report/catreport_sub-672229_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-672229/report/catreport_sub-672229_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-672229/report/catreport_sub-672229_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000065 seconds
flock: executing git
SUCCESS
View git blame Copy permalink