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ds004173-catqc/logs/10071073.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197333/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197333/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197333/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:14 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:14 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197333/ds/sub-000103/sub-000103_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-000103/sub-000103_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 72s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 5s
Final correction 7s
Final scaling 10s
54s
Correct center-of-mass 6s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
105s
SPM preprocessing 1 (estimate 2): 92s
SPM preprocessing 2 (write)
Write Segmentation 26s
Update Segmentation 18s
Update Skull-Stripping 54s
Update probability maps 10s
108s
Global intensity correction 19s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 12s
125s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 23s
Estimate local tissue thresholds (GM) 27s
Intensity transformation 0s
SANLM denoising after LAS (medium) 32s
110s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 21s
Ventricle detection 22s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 75s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
147s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 38s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
11s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 20s
ROI estimation of 'neuromorphometrics' atlas 70s
ROI estimation of 'lpba40' atlas 19s
ROI estimation of 'hammers' atlas 48s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 10s
ROI estimation of 'ibsr' atlas 21s
ROI estimation of 'aal3' atlas 33s
ROI estimation of 'mori' atlas 41s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 36s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 69s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 136s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 129s
Write results 133s
800s
Quality check 16s
/var/lib/condor/execute/dir_3197333/ds/sub-000103/report/catreport_sub-000103_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 34 minute(s) and 56 second(s).
Image Quality Rating (IQR): 86.62% (B)
GM volume (GMV): 48.50% (733.41 / 1512.19 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197333/ds/sub-000103/mri
Reports are saved in /var/lib/condor/execute/dir_3197333/ds/sub-000103/report
Labels are saved in /var/lib/condor/execute/dir_3197333/ds/sub-000103/label
------------------------------------------------------------------------
22-Oct-2025 01:16:13 - Done 'CAT12: Segmentation'
22-Oct-2025 01:16:13 - Done
Bye for now...
get(ok): sourcedata/raw/sub-000103/anat/sub-000103_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197333/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197333/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-000103/label/catROI_sub-000103_acq-headmotion2_T1w.mat (file)
add(ok): sub-000103/label/catROI_sub-000103_acq-headmotion2_T1w.xml (file)
add(ok): sub-000103/mri/it_sub-000103_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000103/mri/it_sub-000103_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000103/mri/m0wp1sub-000103_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000103/mri/mwp1sub-000103_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000103/mri/p0sub-000103_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000103/mri/t_sub-000103_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000103/mri/t_sub-000103_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000103/mri/wp0sub-000103_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000103/report/cat_sub-000103_acq-headmotion2_T1w.mat (file)
add(ok): sub-000103/report/cat_sub-000103_acq-headmotion2_T1w.xml (file)
add(ok): sub-000103/report/catlog_sub-000103_acq-headmotion2_T1w.txt (file)
add(ok): sub-000103/report/catreport_sub-000103_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:17:07 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:17:07 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197333/ds/sub-000103/sub-000103_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-000103/sub-000103_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 76s
Affine preprocessing (APP)
Initialize 9s
Estimate background 9s
Initial correction 8s
Refine background 4s
Final correction 7s
Final scaling 7s
51s
Correct center-of-mass 6s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
90s
SPM preprocessing 1 (estimate 2): 83s
SPM preprocessing 2 (write)
Write Segmentation 25s
Update Segmentation 18s
Update Skull-Stripping 53s
Update probability maps 10s
106s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 21s
Fast Optimized Shooting registration 8s
119s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 17s
Estimate local tissue thresholds (WM) 24s
Estimate local tissue thresholds (GM) 29s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
113s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 21s
Ventricle detection 27s
Blood vessel detection 11s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 80s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
159s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 38s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
15s
12s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 6s
ROI estimation of 'cobra' atlas 15s
ROI estimation of 'neuromorphometrics' atlas 69s
ROI estimation of 'lpba40' atlas 21s
ROI estimation of 'hammers' atlas 47s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 12s
ROI estimation of 'ibsr' atlas 17s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 42s
ROI estimation of 'anatomy3' atlas 64s
ROI estimation of 'julichbrain' atlas 82s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 11s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 32s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 54s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 94s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 93s
Write results 95s
697s
Quality check 16s
/var/lib/condor/execute/dir_3197333/ds/sub-000103/report/catreport_sub-000103_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 41 second(s).
Image Quality Rating (IQR): 87.59% (B+)
GM volume (GMV): 50.00% (763.02 / 1526.17 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197333/ds/sub-000103/mri
Reports are saved in /var/lib/condor/execute/dir_3197333/ds/sub-000103/report
Labels are saved in /var/lib/condor/execute/dir_3197333/ds/sub-000103/label
------------------------------------------------------------------------
22-Oct-2025 01:50:51 - Done 'CAT12: Segmentation'
22-Oct-2025 01:50:51 - Done
Bye for now...
get(ok): sourcedata/raw/sub-000103/anat/sub-000103_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-000103/label/catROI_sub-000103_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-000103/mri/it_sub-000103_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-000103/mri/it_sub-000103_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000103/mri/m0wp1sub-000103_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000103/mri/mwp1sub-000103_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000103/mri/p0sub-000103_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000103/mri/t_sub-000103_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-000103/mri/t_sub-000103_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000103/mri/wp0sub-000103_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000103/report/cat_sub-000103_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-000103/report/catreport_sub-000103_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197333/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-000103/label/catROI_sub-000103_acq-standard_T1w.mat (file)
add(ok): sub-000103/label/catROI_sub-000103_acq-standard_T1w.xml (file)
add(ok): sub-000103/mri/it_sub-000103_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000103/mri/it_sub-000103_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000103/mri/m0wp1sub-000103_acq-standard_T1w.nii.gz (file)
add(ok): sub-000103/mri/mwp1sub-000103_acq-standard_T1w.nii.gz (file)
add(ok): sub-000103/mri/p0sub-000103_acq-standard_T1w.nii.gz (file)
add(ok): sub-000103/mri/t_sub-000103_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000103/mri/t_sub-000103_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000103/mri/wp0sub-000103_acq-standard_T1w.nii.gz (file)
add(ok): sub-000103/report/cat_sub-000103_acq-standard_T1w.mat (file)
add(ok): sub-000103/report/cat_sub-000103_acq-standard_T1w.xml (file)
add(ok): sub-000103/report/catlog_sub-000103_acq-standard_T1w.txt (file)
add(ok): sub-000103/report/catreport_sub-000103_acq-standard_T1w.pdf (file)
add(ok): sub-000103/label/catROI_sub-000103_acq-headmotion2_T1w.mat (file)
add(ok): sub-000103/mri/it_sub-000103_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000103/mri/it_sub-000103_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000103/mri/m0wp1sub-000103_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000103/mri/mwp1sub-000103_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000103/mri/p0sub-000103_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000103/mri/t_sub-000103_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000103/mri/t_sub-000103_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000103/mri/wp0sub-000103_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000103/report/cat_sub-000103_acq-headmotion2_T1w.mat (file)
add(ok): sub-000103/report/catreport_sub-000103_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:51:47 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:51:47 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197333/ds/sub-000103/sub-000103_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-000103/sub-000103_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 73s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 8s
Refine background 4s
Final correction 7s
Final scaling 7s
49s
Correct center-of-mass 5s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
89s
SPM preprocessing 1 (estimate 2): 77s
SPM preprocessing 2 (write)
Write Segmentation 25s
Update Segmentation 17s
Update Skull-Stripping 51s
Update probability maps 10s
103s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 8s
121s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 16s
Estimate local tissue thresholds (WM) 24s
Estimate local tissue thresholds (GM) 28s
Intensity transformation 0s
SANLM denoising after LAS (medium) 31s
112s
ROI segmentation (partitioning)
Atlas -> subject space 10s
Major structures 21s
Ventricle detection 22s
Blood vessel detection 10s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 78s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
151s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 36s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
14s
16s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 5s
ROI estimation of 'cobra' atlas 18s
ROI estimation of 'neuromorphometrics' atlas 65s
ROI estimation of 'lpba40' atlas 17s
ROI estimation of 'hammers' atlas 48s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 16s
ROI estimation of 'aal3' atlas 25s
ROI estimation of 'mori' atlas 37s
ROI estimation of 'anatomy3' atlas 50s
ROI estimation of 'julichbrain' atlas 54s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 41s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 77s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 76s
Write results 78s
574s
Quality check 13s
/var/lib/condor/execute/dir_3197333/ds/sub-000103/report/catreport_sub-000103_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 4 second(s).
Image Quality Rating (IQR): 87.01% (B+)
GM volume (GMV): 49.10% (746.76 / 1520.93 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197333/ds/sub-000103/mri
Reports are saved in /var/lib/condor/execute/dir_3197333/ds/sub-000103/report
Labels are saved in /var/lib/condor/execute/dir_3197333/ds/sub-000103/label
------------------------------------------------------------------------
22-Oct-2025 02:22:54 - Done 'CAT12: Segmentation'
22-Oct-2025 02:22:54 - Done
Bye for now...
get(ok): sourcedata/raw/sub-000103/anat/sub-000103_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-000103/label/catROI_sub-000103_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-000103/label/catROI_sub-000103_acq-standard_T1w.mat (file)
unlock(ok): sub-000103/mri/it_sub-000103_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-000103/mri/it_sub-000103_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000103/mri/it_sub-000103_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-000103/mri/it_sub-000103_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000103/mri/m0wp1sub-000103_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000103/mri/m0wp1sub-000103_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000103/mri/mwp1sub-000103_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000103/mri/mwp1sub-000103_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000103/mri/p0sub-000103_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000103/mri/p0sub-000103_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000103/mri/t_sub-000103_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-000103/mri/t_sub-000103_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000103/mri/t_sub-000103_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-000103/mri/t_sub-000103_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-000103/mri/wp0sub-000103_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-000103/mri/wp0sub-000103_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-000103/report/cat_sub-000103_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-000103/report/cat_sub-000103_acq-standard_T1w.mat (file)
unlock(ok): sub-000103/report/catreport_sub-000103_acq-headmotion2_T1w.pdf (file)
unlock(ok): sub-000103/report/catreport_sub-000103_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197333/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-000103/label/catROI_sub-000103_acq-headmotion1_T1w.mat (file)
add(ok): sub-000103/label/catROI_sub-000103_acq-headmotion1_T1w.xml (file)
add(ok): sub-000103/mri/it_sub-000103_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000103/mri/it_sub-000103_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000103/mri/m0wp1sub-000103_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000103/mri/mwp1sub-000103_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000103/mri/p0sub-000103_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000103/mri/t_sub-000103_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-000103/mri/t_sub-000103_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-000103/mri/wp0sub-000103_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-000103/report/cat_sub-000103_acq-headmotion1_T1w.mat (file)
add(ok): sub-000103/report/cat_sub-000103_acq-headmotion1_T1w.xml (file)
add(ok): sub-000103/report/catlog_sub-000103_acq-headmotion1_T1w.txt (file)
add(ok): sub-000103/report/catreport_sub-000103_acq-headmotion1_T1w.pdf (file)
add(ok): sub-000103/label/catROI_sub-000103_acq-headmotion2_T1w.mat (file)
add(ok): sub-000103/label/catROI_sub-000103_acq-standard_T1w.mat (file)
add(ok): sub-000103/mri/it_sub-000103_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000103/mri/it_sub-000103_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000103/mri/it_sub-000103_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000103/mri/it_sub-000103_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000103/mri/m0wp1sub-000103_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000103/mri/m0wp1sub-000103_acq-standard_T1w.nii.gz (file)
add(ok): sub-000103/mri/mwp1sub-000103_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000103/mri/mwp1sub-000103_acq-standard_T1w.nii.gz (file)
add(ok): sub-000103/mri/p0sub-000103_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000103/mri/p0sub-000103_acq-standard_T1w.nii.gz (file)
add(ok): sub-000103/mri/t_sub-000103_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-000103/mri/t_sub-000103_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-000103/mri/t_sub-000103_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-000103/mri/t_sub-000103_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-000103/mri/wp0sub-000103_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-000103/mri/wp0sub-000103_acq-standard_T1w.nii.gz (file)
add(ok): sub-000103/report/cat_sub-000103_acq-headmotion2_T1w.mat (file)
add(ok): sub-000103/report/cat_sub-000103_acq-standard_T1w.mat (file)
add(ok): sub-000103/report/catreport_sub-000103_acq-headmotion2_T1w.pdf (file)
add(ok): sub-000103/report/catreport_sub-000103_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-000103/label/catROI_sub-000103_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/label/catROI_sub-000103_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/label/catROI_sub-000103_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/it_sub-000103_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/it_sub-000103_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/it_sub-000103_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/it_sub-000103_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/it_sub-000103_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/it_sub-000103_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/m0wp1sub-000103_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/m0wp1sub-000103_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/m0wp1sub-000103_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/mwp1sub-000103_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/mwp1sub-000103_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/mwp1sub-000103_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/p0sub-000103_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/p0sub-000103_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/p0sub-000103_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/t_sub-000103_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/t_sub-000103_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/t_sub-000103_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/t_sub-000103_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/t_sub-000103_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/t_sub-000103_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/wp0sub-000103_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/wp0sub-000103_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000103/mri/wp0sub-000103_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-000103/report/cat_sub-000103_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/report/cat_sub-000103_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/report/cat_sub-000103_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-000103/report/catreport_sub-000103_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-000103/report/catreport_sub-000103_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-000103/report/catreport_sub-000103_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000030 seconds
flock: executing git
SUCCESS
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