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ds004173-catqc/logs/10071071.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_3197314/ds (dataset)
install(ok): /var/lib/condor/execute/dir_3197314/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197314/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:41:13 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:41:13 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197314/ds/sub-132674/sub-132674_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-132674/sub-132674_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 62s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 7s
49s
Correct center-of-mass 10s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
12s
Use initial fine affine registration. 77s
SPM preprocessing 1 (estimate 2): 67s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
98s
Global intensity correction 19s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 12s
127s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.10) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
100s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 17s
Ventricle detection 19s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 60s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
121s
No enhanced blood vessel correction is required 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 45s
ROI estimation of 'lpba40' atlas 15s
ROI estimation of 'hammers' atlas 36s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 9s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 45s
ROI estimation of 'anatomy3' atlas 65s
ROI estimation of 'julichbrain' atlas 81s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 38s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 66s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 143s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 215s
Write results 220s
829s
Quality check 18s
/var/lib/condor/execute/dir_3197314/ds/sub-132674/report/catreport_sub-132674_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 33 minute(s) and 6 second(s).
Image Quality Rating (IQR): 85.33% (B)
GM volume (GMV): 46.15% (575.34 / 1246.67 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197314/ds/sub-132674/mri
Reports are saved in /var/lib/condor/execute/dir_3197314/ds/sub-132674/report
Labels are saved in /var/lib/condor/execute/dir_3197314/ds/sub-132674/label
------------------------------------------------------------------------
22-Oct-2025 01:14:23 - Done 'CAT12: Segmentation'
22-Oct-2025 01:14:23 - Done
Bye for now...
get(ok): sourcedata/raw/sub-132674/anat/sub-132674_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_3197314/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_3197314/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-132674/label/catROI_sub-132674_acq-headmotion1_T1w.mat (file)
add(ok): sub-132674/label/catROI_sub-132674_acq-headmotion1_T1w.xml (file)
add(ok): sub-132674/mri/it_sub-132674_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-132674/mri/it_sub-132674_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-132674/mri/m0wp1sub-132674_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-132674/mri/mwp1sub-132674_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-132674/mri/p0sub-132674_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-132674/mri/t_sub-132674_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-132674/mri/t_sub-132674_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-132674/mri/wp0sub-132674_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-132674/report/cat_sub-132674_acq-headmotion1_T1w.mat (file)
add(ok): sub-132674/report/cat_sub-132674_acq-headmotion1_T1w.xml (file)
add(ok): sub-132674/report/catlog_sub-132674_acq-headmotion1_T1w.txt (file)
add(ok): sub-132674/report/catreport_sub-132674_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:15:33 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:15:33 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197314/ds/sub-132674/sub-132674_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-132674/sub-132674_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 9s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
47s
Correct center-of-mass 9s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
9s
Use initial fine affine registration. 69s
SPM preprocessing 1 (estimate 2): 68s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 10s
97s
Global intensity correction 19s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 11s
125s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.11) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
100s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 17s
Ventricle detection 15s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 63s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
121s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
12s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 46s
ROI estimation of 'lpba40' atlas 16s
ROI estimation of 'hammers' atlas 32s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 29s
ROI estimation of 'anatomy3' atlas 49s
ROI estimation of 'julichbrain' atlas 73s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 10s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 36s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 131s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 200s
Write results 205s
755s
Quality check 19s
/var/lib/condor/execute/dir_3197314/ds/sub-132674/report/catreport_sub-132674_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 31 minute(s) and 43 second(s).
Image Quality Rating (IQR): 85.53% (B)
GM volume (GMV): 47.14% (584.95 / 1240.76 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197314/ds/sub-132674/mri
Reports are saved in /var/lib/condor/execute/dir_3197314/ds/sub-132674/report
Labels are saved in /var/lib/condor/execute/dir_3197314/ds/sub-132674/label
------------------------------------------------------------------------
22-Oct-2025 01:47:19 - Done 'CAT12: Segmentation'
22-Oct-2025 01:47:19 - Done
Bye for now...
get(ok): sourcedata/raw/sub-132674/anat/sub-132674_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-132674/label/catROI_sub-132674_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-132674/mri/it_sub-132674_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-132674/mri/it_sub-132674_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-132674/mri/m0wp1sub-132674_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-132674/mri/mwp1sub-132674_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-132674/mri/p0sub-132674_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-132674/mri/t_sub-132674_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-132674/mri/t_sub-132674_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-132674/mri/wp0sub-132674_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-132674/report/cat_sub-132674_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-132674/report/catreport_sub-132674_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197314/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-132674/label/catROI_sub-132674_acq-standard_T1w.mat (file)
add(ok): sub-132674/label/catROI_sub-132674_acq-standard_T1w.xml (file)
add(ok): sub-132674/mri/it_sub-132674_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-132674/mri/it_sub-132674_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-132674/mri/m0wp1sub-132674_acq-standard_T1w.nii.gz (file)
add(ok): sub-132674/mri/mwp1sub-132674_acq-standard_T1w.nii.gz (file)
add(ok): sub-132674/mri/p0sub-132674_acq-standard_T1w.nii.gz (file)
add(ok): sub-132674/mri/t_sub-132674_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-132674/mri/t_sub-132674_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-132674/mri/wp0sub-132674_acq-standard_T1w.nii.gz (file)
add(ok): sub-132674/report/cat_sub-132674_acq-standard_T1w.mat (file)
add(ok): sub-132674/report/cat_sub-132674_acq-standard_T1w.xml (file)
add(ok): sub-132674/report/catlog_sub-132674_acq-standard_T1w.txt (file)
add(ok): sub-132674/report/catreport_sub-132674_acq-standard_T1w.pdf (file)
add(ok): sub-132674/label/catROI_sub-132674_acq-headmotion1_T1w.mat (file)
add(ok): sub-132674/mri/it_sub-132674_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-132674/mri/it_sub-132674_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-132674/mri/m0wp1sub-132674_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-132674/mri/mwp1sub-132674_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-132674/mri/p0sub-132674_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-132674/mri/t_sub-132674_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-132674/mri/t_sub-132674_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-132674/mri/wp0sub-132674_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-132674/report/cat_sub-132674_acq-headmotion1_T1w.mat (file)
add(ok): sub-132674/report/catreport_sub-132674_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:48:49 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:48:50 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_3197314/ds/sub-132674/sub-132674_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-132674/sub-132674_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
46s
Correct center-of-mass 7s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 69s
SPM preprocessing 2 (write)
Write Segmentation 24s
Update Segmentation 16s
Update Skull-Stripping 47s
Update probability maps 9s
96s
Global intensity correction 18s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 11s
123s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.10) 14s
Estimate local tissue thresholds (WM) 22s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
99s
ROI segmentation (partitioning)
Atlas -> subject space 9s
Major structures 17s
Ventricle detection 18s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 69s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
129s
Apply enhanced blood vessel correction 2s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 44s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 33s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 30s
ROI estimation of 'anatomy3' atlas 44s
ROI estimation of 'julichbrain' atlas 56s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 55s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 126s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 167s
Write results 169s
659s
Quality check 15s
/var/lib/condor/execute/dir_3197314/ds/sub-132674/report/catreport_sub-132674_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 30 minute(s) and 0 second(s).
Image Quality Rating (IQR): 86.13% (B)
GM volume (GMV): 45.96% (568.76 / 1237.52 ml)
Segmentations are saved in /var/lib/condor/execute/dir_3197314/ds/sub-132674/mri
Reports are saved in /var/lib/condor/execute/dir_3197314/ds/sub-132674/report
Labels are saved in /var/lib/condor/execute/dir_3197314/ds/sub-132674/label
------------------------------------------------------------------------
22-Oct-2025 02:18:55 - Done 'CAT12: Segmentation'
22-Oct-2025 02:18:55 - Done
Bye for now...
get(ok): sourcedata/raw/sub-132674/anat/sub-132674_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-132674/label/catROI_sub-132674_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-132674/label/catROI_sub-132674_acq-standard_T1w.mat (file)
unlock(ok): sub-132674/mri/it_sub-132674_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-132674/mri/it_sub-132674_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-132674/mri/it_sub-132674_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-132674/mri/it_sub-132674_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-132674/mri/m0wp1sub-132674_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-132674/mri/m0wp1sub-132674_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-132674/mri/mwp1sub-132674_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-132674/mri/mwp1sub-132674_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-132674/mri/p0sub-132674_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-132674/mri/p0sub-132674_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-132674/mri/t_sub-132674_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-132674/mri/t_sub-132674_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-132674/mri/t_sub-132674_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-132674/mri/t_sub-132674_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-132674/mri/wp0sub-132674_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-132674/mri/wp0sub-132674_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-132674/report/cat_sub-132674_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-132674/report/cat_sub-132674_acq-standard_T1w.mat (file)
unlock(ok): sub-132674/report/catreport_sub-132674_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-132674/report/catreport_sub-132674_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_3197314/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-132674/label/catROI_sub-132674_acq-headmotion2_T1w.mat (file)
add(ok): sub-132674/label/catROI_sub-132674_acq-headmotion2_T1w.xml (file)
add(ok): sub-132674/mri/it_sub-132674_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-132674/mri/it_sub-132674_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-132674/mri/m0wp1sub-132674_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-132674/mri/mwp1sub-132674_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-132674/mri/p0sub-132674_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-132674/mri/t_sub-132674_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-132674/mri/t_sub-132674_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-132674/mri/wp0sub-132674_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-132674/report/cat_sub-132674_acq-headmotion2_T1w.mat (file)
add(ok): sub-132674/report/cat_sub-132674_acq-headmotion2_T1w.xml (file)
add(ok): sub-132674/report/catlog_sub-132674_acq-headmotion2_T1w.txt (file)
add(ok): sub-132674/report/catreport_sub-132674_acq-headmotion2_T1w.pdf (file)
add(ok): sub-132674/label/catROI_sub-132674_acq-headmotion1_T1w.mat (file)
add(ok): sub-132674/label/catROI_sub-132674_acq-standard_T1w.mat (file)
add(ok): sub-132674/mri/it_sub-132674_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-132674/mri/it_sub-132674_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-132674/mri/it_sub-132674_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-132674/mri/it_sub-132674_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-132674/mri/m0wp1sub-132674_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-132674/mri/m0wp1sub-132674_acq-standard_T1w.nii.gz (file)
add(ok): sub-132674/mri/mwp1sub-132674_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-132674/mri/mwp1sub-132674_acq-standard_T1w.nii.gz (file)
add(ok): sub-132674/mri/p0sub-132674_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-132674/mri/p0sub-132674_acq-standard_T1w.nii.gz (file)
add(ok): sub-132674/mri/t_sub-132674_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-132674/mri/t_sub-132674_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-132674/mri/t_sub-132674_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-132674/mri/t_sub-132674_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-132674/mri/wp0sub-132674_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-132674/mri/wp0sub-132674_acq-standard_T1w.nii.gz (file)
add(ok): sub-132674/report/cat_sub-132674_acq-headmotion1_T1w.mat (file)
add(ok): sub-132674/report/cat_sub-132674_acq-standard_T1w.mat (file)
add(ok): sub-132674/report/catreport_sub-132674_acq-headmotion1_T1w.pdf (file)
add(ok): sub-132674/report/catreport_sub-132674_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-132674/label/catROI_sub-132674_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/label/catROI_sub-132674_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/label/catROI_sub-132674_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/it_sub-132674_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/it_sub-132674_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/it_sub-132674_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/it_sub-132674_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/it_sub-132674_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/it_sub-132674_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/m0wp1sub-132674_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/m0wp1sub-132674_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/m0wp1sub-132674_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/mwp1sub-132674_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/mwp1sub-132674_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/mwp1sub-132674_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/p0sub-132674_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/p0sub-132674_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/p0sub-132674_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/t_sub-132674_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/t_sub-132674_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/t_sub-132674_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/t_sub-132674_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/t_sub-132674_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/t_sub-132674_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/wp0sub-132674_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/wp0sub-132674_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-132674/mri/wp0sub-132674_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-132674/report/cat_sub-132674_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/report/cat_sub-132674_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/report/cat_sub-132674_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-132674/report/catreport_sub-132674_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-132674/report/catreport_sub-132674_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-132674/report/catreport_sub-132674_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000102 seconds
flock: executing git
SUCCESS
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