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ds004173-catqc/logs/10071066.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1234053/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1234053/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234053/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:29 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:30 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234053/ds/sub-691777/sub-691777_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-691777/sub-691777_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 67s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 6s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
69s
SPM preprocessing 1 (estimate 2): 53s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 7s
101s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
88s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 60s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
111s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 26s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 24s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 19s
ROI estimation of 'mori' atlas 28s
ROI estimation of 'anatomy3' atlas 41s
ROI estimation of 'julichbrain' atlas 58s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 47s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 94s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 133s
Write results 136s
546s
Quality check 14s
/var/lib/condor/execute/dir_1234053/ds/sub-691777/report/catreport_sub-691777_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 4 second(s).
Image Quality Rating (IQR): 87.45% (B+)
GM volume (GMV): 47.26% (616.56 / 1304.52 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234053/ds/sub-691777/mri
Reports are saved in /var/lib/condor/execute/dir_1234053/ds/sub-691777/report
Labels are saved in /var/lib/condor/execute/dir_1234053/ds/sub-691777/label
------------------------------------------------------------------------
22-Oct-2025 01:05:36 - Done 'CAT12: Segmentation'
22-Oct-2025 01:05:36 - Done
Bye for now...
get(ok): sourcedata/raw/sub-691777/anat/sub-691777_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234053/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1234053/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-691777/label/catROI_sub-691777_acq-headmotion1_T1w.mat (file)
add(ok): sub-691777/label/catROI_sub-691777_acq-headmotion1_T1w.xml (file)
add(ok): sub-691777/mri/it_sub-691777_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-691777/mri/it_sub-691777_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-691777/mri/m0wp1sub-691777_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691777/mri/mwp1sub-691777_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691777/mri/p0sub-691777_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691777/mri/t_sub-691777_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-691777/mri/t_sub-691777_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-691777/mri/wp0sub-691777_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691777/report/cat_sub-691777_acq-headmotion1_T1w.mat (file)
add(ok): sub-691777/report/cat_sub-691777_acq-headmotion1_T1w.xml (file)
add(ok): sub-691777/report/catlog_sub-691777_acq-headmotion1_T1w.txt (file)
add(ok): sub-691777/report/catreport_sub-691777_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:06:24 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:06:24 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234053/ds/sub-691777/sub-691777_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-691777/sub-691777_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 5s
40s
Correct center-of-mass 5s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
66s
SPM preprocessing 1 (estimate 2): 51s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 8s
82s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 6s
99s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.01) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
90s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 16s
Ventricle detection 16s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 55s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
110s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 27s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.07,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 4s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 18s
ROI estimation of 'anatomy3' atlas 34s
ROI estimation of 'julichbrain' atlas 50s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 7s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 43s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 89s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 129s
Write results 132s
486s
Quality check 13s
/var/lib/condor/execute/dir_1234053/ds/sub-691777/report/catreport_sub-691777_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 58 second(s).
Image Quality Rating (IQR): 88.02% (B+)
GM volume (GMV): 48.99% (640.20 / 1306.83 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234053/ds/sub-691777/mri
Reports are saved in /var/lib/condor/execute/dir_1234053/ds/sub-691777/report
Labels are saved in /var/lib/condor/execute/dir_1234053/ds/sub-691777/label
------------------------------------------------------------------------
22-Oct-2025 01:30:25 - Done 'CAT12: Segmentation'
22-Oct-2025 01:30:25 - Done
Bye for now...
get(ok): sourcedata/raw/sub-691777/anat/sub-691777_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-691777/label/catROI_sub-691777_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-691777/mri/it_sub-691777_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-691777/mri/it_sub-691777_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-691777/mri/m0wp1sub-691777_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-691777/mri/mwp1sub-691777_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-691777/mri/p0sub-691777_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-691777/mri/t_sub-691777_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-691777/mri/t_sub-691777_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-691777/mri/wp0sub-691777_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-691777/report/cat_sub-691777_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-691777/report/catreport_sub-691777_acq-headmotion1_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234053/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-691777/label/catROI_sub-691777_acq-standard_T1w.mat (file)
add(ok): sub-691777/label/catROI_sub-691777_acq-standard_T1w.xml (file)
add(ok): sub-691777/mri/it_sub-691777_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-691777/mri/it_sub-691777_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-691777/mri/m0wp1sub-691777_acq-standard_T1w.nii.gz (file)
add(ok): sub-691777/mri/mwp1sub-691777_acq-standard_T1w.nii.gz (file)
add(ok): sub-691777/mri/p0sub-691777_acq-standard_T1w.nii.gz (file)
add(ok): sub-691777/mri/t_sub-691777_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-691777/mri/t_sub-691777_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-691777/mri/wp0sub-691777_acq-standard_T1w.nii.gz (file)
add(ok): sub-691777/report/cat_sub-691777_acq-standard_T1w.mat (file)
add(ok): sub-691777/report/cat_sub-691777_acq-standard_T1w.xml (file)
add(ok): sub-691777/report/catlog_sub-691777_acq-standard_T1w.txt (file)
add(ok): sub-691777/report/catreport_sub-691777_acq-standard_T1w.pdf (file)
add(ok): sub-691777/label/catROI_sub-691777_acq-headmotion1_T1w.mat (file)
add(ok): sub-691777/mri/it_sub-691777_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-691777/mri/it_sub-691777_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-691777/mri/m0wp1sub-691777_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691777/mri/mwp1sub-691777_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691777/mri/p0sub-691777_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691777/mri/t_sub-691777_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-691777/mri/t_sub-691777_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-691777/mri/wp0sub-691777_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691777/report/cat_sub-691777_acq-headmotion1_T1w.mat (file)
add(ok): sub-691777/report/catreport_sub-691777_acq-headmotion1_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:31:21 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:31:22 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234053/ds/sub-691777/sub-691777_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-691777/sub-691777_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 63s
Affine preprocessing (APP)
Initialize 8s
Estimate background 8s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 6s
Affine registration 7s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
72s
SPM preprocessing 1 (estimate 2): 51s
SPM preprocessing 2 (write)
Write Segmentation 19s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
81s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 15s
Fast Optimized Shooting registration 9s
102s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
89s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 17s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 49s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
104s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 1s
Level 3 cleanup (CSF/WM PVE) 2s
11s
9s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 31s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 16s
ROI estimation of 'anatomy3' atlas 23s
ROI estimation of 'julichbrain' atlas 30s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 74s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 105s
Write results 107s
394s
Quality check 12s
/var/lib/condor/execute/dir_1234053/ds/sub-691777/report/catreport_sub-691777_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 22 minute(s) and 15 second(s).
Image Quality Rating (IQR): 87.44% (B+)
GM volume (GMV): 47.19% (611.65 / 1296.19 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234053/ds/sub-691777/mri
Reports are saved in /var/lib/condor/execute/dir_1234053/ds/sub-691777/report
Labels are saved in /var/lib/condor/execute/dir_1234053/ds/sub-691777/label
------------------------------------------------------------------------
22-Oct-2025 01:53:39 - Done 'CAT12: Segmentation'
22-Oct-2025 01:53:39 - Done
Bye for now...
get(ok): sourcedata/raw/sub-691777/anat/sub-691777_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-691777/label/catROI_sub-691777_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-691777/label/catROI_sub-691777_acq-standard_T1w.mat (file)
unlock(ok): sub-691777/mri/it_sub-691777_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-691777/mri/it_sub-691777_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-691777/mri/it_sub-691777_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-691777/mri/it_sub-691777_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-691777/mri/m0wp1sub-691777_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-691777/mri/m0wp1sub-691777_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-691777/mri/mwp1sub-691777_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-691777/mri/mwp1sub-691777_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-691777/mri/p0sub-691777_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-691777/mri/p0sub-691777_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-691777/mri/t_sub-691777_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-691777/mri/t_sub-691777_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-691777/mri/t_sub-691777_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-691777/mri/t_sub-691777_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-691777/mri/wp0sub-691777_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-691777/mri/wp0sub-691777_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-691777/report/cat_sub-691777_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-691777/report/cat_sub-691777_acq-standard_T1w.mat (file)
unlock(ok): sub-691777/report/catreport_sub-691777_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-691777/report/catreport_sub-691777_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234053/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-691777/label/catROI_sub-691777_acq-headmotion2_T1w.mat (file)
add(ok): sub-691777/label/catROI_sub-691777_acq-headmotion2_T1w.xml (file)
add(ok): sub-691777/mri/it_sub-691777_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-691777/mri/it_sub-691777_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-691777/mri/m0wp1sub-691777_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-691777/mri/mwp1sub-691777_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-691777/mri/p0sub-691777_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-691777/mri/t_sub-691777_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-691777/mri/t_sub-691777_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-691777/mri/wp0sub-691777_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-691777/report/cat_sub-691777_acq-headmotion2_T1w.mat (file)
add(ok): sub-691777/report/cat_sub-691777_acq-headmotion2_T1w.xml (file)
add(ok): sub-691777/report/catlog_sub-691777_acq-headmotion2_T1w.txt (file)
add(ok): sub-691777/report/catreport_sub-691777_acq-headmotion2_T1w.pdf (file)
add(ok): sub-691777/label/catROI_sub-691777_acq-headmotion1_T1w.mat (file)
add(ok): sub-691777/label/catROI_sub-691777_acq-standard_T1w.mat (file)
add(ok): sub-691777/mri/it_sub-691777_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-691777/mri/it_sub-691777_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-691777/mri/it_sub-691777_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-691777/mri/it_sub-691777_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-691777/mri/m0wp1sub-691777_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691777/mri/m0wp1sub-691777_acq-standard_T1w.nii.gz (file)
add(ok): sub-691777/mri/mwp1sub-691777_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691777/mri/mwp1sub-691777_acq-standard_T1w.nii.gz (file)
add(ok): sub-691777/mri/p0sub-691777_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691777/mri/p0sub-691777_acq-standard_T1w.nii.gz (file)
add(ok): sub-691777/mri/t_sub-691777_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-691777/mri/t_sub-691777_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-691777/mri/t_sub-691777_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-691777/mri/t_sub-691777_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-691777/mri/wp0sub-691777_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-691777/mri/wp0sub-691777_acq-standard_T1w.nii.gz (file)
add(ok): sub-691777/report/cat_sub-691777_acq-headmotion1_T1w.mat (file)
add(ok): sub-691777/report/cat_sub-691777_acq-standard_T1w.mat (file)
add(ok): sub-691777/report/catreport_sub-691777_acq-headmotion1_T1w.pdf (file)
add(ok): sub-691777/report/catreport_sub-691777_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-691777/label/catROI_sub-691777_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/label/catROI_sub-691777_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/label/catROI_sub-691777_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/it_sub-691777_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/it_sub-691777_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/it_sub-691777_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/it_sub-691777_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/it_sub-691777_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/it_sub-691777_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/m0wp1sub-691777_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/m0wp1sub-691777_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/m0wp1sub-691777_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/mwp1sub-691777_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/mwp1sub-691777_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/mwp1sub-691777_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/p0sub-691777_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/p0sub-691777_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/p0sub-691777_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/t_sub-691777_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/t_sub-691777_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/t_sub-691777_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/t_sub-691777_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/t_sub-691777_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/t_sub-691777_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/wp0sub-691777_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/wp0sub-691777_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691777/mri/wp0sub-691777_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-691777/report/cat_sub-691777_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/report/cat_sub-691777_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/report/cat_sub-691777_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-691777/report/catreport_sub-691777_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-691777/report/catreport_sub-691777_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-691777/report/catreport_sub-691777_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001250 seconds
flock: executing git
SUCCESS
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