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ds004173-catqc/logs/10071065.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1234046/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1234046/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234046/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:29 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:29 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234046/ds/sub-890465/sub-890465_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-890465/sub-890465_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 52s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 5s
Affine registration 15s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
82s
SPM preprocessing 1 (estimate 2): 56s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
87s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 10s
106s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 3s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
95s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 16s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 66s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
124s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 10s
ROI estimation of 'neuromorphometrics' atlas 36s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 36s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 14s
ROI estimation of 'aal3' atlas 22s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 61s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 50s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 100s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 129s
Write results 131s
597s
Quality check 15s
/var/lib/condor/execute/dir_1234046/ds/sub-890465/report/catreport_sub-890465_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 27 second(s).
Image Quality Rating (IQR): 84.54% (B)
GM volume (GMV): 48.31% (696.45 / 1441.51 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234046/ds/sub-890465/mri
Reports are saved in /var/lib/condor/execute/dir_1234046/ds/sub-890465/report
Labels are saved in /var/lib/condor/execute/dir_1234046/ds/sub-890465/label
------------------------------------------------------------------------
22-Oct-2025 01:06:59 - Done 'CAT12: Segmentation'
22-Oct-2025 01:06:59 - Done
Bye for now...
get(ok): sourcedata/raw/sub-890465/anat/sub-890465_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234046/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1234046/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-890465/label/catROI_sub-890465_acq-headmotion2_T1w.mat (file)
add(ok): sub-890465/label/catROI_sub-890465_acq-headmotion2_T1w.xml (file)
add(ok): sub-890465/mri/it_sub-890465_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-890465/mri/it_sub-890465_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-890465/mri/m0wp1sub-890465_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-890465/mri/mwp1sub-890465_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-890465/mri/p0sub-890465_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-890465/mri/t_sub-890465_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-890465/mri/t_sub-890465_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-890465/mri/wp0sub-890465_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-890465/report/cat_sub-890465_acq-headmotion2_T1w.mat (file)
add(ok): sub-890465/report/cat_sub-890465_acq-headmotion2_T1w.xml (file)
add(ok): sub-890465/report/catlog_sub-890465_acq-headmotion2_T1w.txt (file)
add(ok): sub-890465/report/catreport_sub-890465_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:07:43 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:07:43 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234046/ds/sub-890465/sub-890465_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-890465/sub-890465_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 53s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 4s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
69s
SPM preprocessing 1 (estimate 2): 56s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
85s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 7s
101s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 25s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 16s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 66s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
123s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
6s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 33s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 25s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 15s
ROI estimation of 'mori' atlas 18s
ROI estimation of 'anatomy3' atlas 41s
ROI estimation of 'julichbrain' atlas 55s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 99s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 118s
Write results 120s
524s
Quality check 15s
/var/lib/condor/execute/dir_1234046/ds/sub-890465/report/catreport_sub-890465_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 41 second(s).
Image Quality Rating (IQR): 84.55% (B)
GM volume (GMV): 49.24% (710.05 / 1442.06 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234046/ds/sub-890465/mri
Reports are saved in /var/lib/condor/execute/dir_1234046/ds/sub-890465/report
Labels are saved in /var/lib/condor/execute/dir_1234046/ds/sub-890465/label
------------------------------------------------------------------------
22-Oct-2025 01:32:27 - Done 'CAT12: Segmentation'
22-Oct-2025 01:32:27 - Done
Bye for now...
get(ok): sourcedata/raw/sub-890465/anat/sub-890465_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-890465/label/catROI_sub-890465_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-890465/mri/it_sub-890465_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-890465/mri/it_sub-890465_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-890465/mri/m0wp1sub-890465_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-890465/mri/mwp1sub-890465_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-890465/mri/p0sub-890465_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-890465/mri/t_sub-890465_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-890465/mri/t_sub-890465_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-890465/mri/wp0sub-890465_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-890465/report/cat_sub-890465_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-890465/report/catreport_sub-890465_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234046/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-890465/label/catROI_sub-890465_acq-headmotion1_T1w.mat (file)
add(ok): sub-890465/label/catROI_sub-890465_acq-headmotion1_T1w.xml (file)
add(ok): sub-890465/mri/it_sub-890465_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-890465/mri/it_sub-890465_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-890465/mri/m0wp1sub-890465_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-890465/mri/mwp1sub-890465_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-890465/mri/p0sub-890465_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-890465/mri/t_sub-890465_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-890465/mri/t_sub-890465_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-890465/mri/wp0sub-890465_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-890465/report/cat_sub-890465_acq-headmotion1_T1w.mat (file)
add(ok): sub-890465/report/cat_sub-890465_acq-headmotion1_T1w.xml (file)
add(ok): sub-890465/report/catlog_sub-890465_acq-headmotion1_T1w.txt (file)
add(ok): sub-890465/report/catreport_sub-890465_acq-headmotion1_T1w.pdf (file)
add(ok): sub-890465/label/catROI_sub-890465_acq-headmotion2_T1w.mat (file)
add(ok): sub-890465/mri/it_sub-890465_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-890465/mri/it_sub-890465_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-890465/mri/m0wp1sub-890465_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-890465/mri/mwp1sub-890465_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-890465/mri/p0sub-890465_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-890465/mri/t_sub-890465_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-890465/mri/t_sub-890465_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-890465/mri/wp0sub-890465_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-890465/report/cat_sub-890465_acq-headmotion2_T1w.mat (file)
add(ok): sub-890465/report/catreport_sub-890465_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:33:20 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:33:20 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234046/ds/sub-890465/sub-890465_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-890465/sub-890465_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 56s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 4s
Affine registration 11s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
70s
SPM preprocessing 1 (estimate 2): 54s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
84s
Global intensity correction 15s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
100s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 2s
Prepare segments (LASmod = 1.06) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 16s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 68s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
127s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 21s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 27s
ROI estimation of 'julichbrain' atlas 36s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 6s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 16s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 36s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 82s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 119s
Write results 121s
436s
Quality check 14s
/var/lib/condor/execute/dir_1234046/ds/sub-890465/report/catreport_sub-890465_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 22 second(s).
Image Quality Rating (IQR): 87.14% (B+)
GM volume (GMV): 50.14% (725.12 / 1446.11 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234046/ds/sub-890465/mri
Reports are saved in /var/lib/condor/execute/dir_1234046/ds/sub-890465/report
Labels are saved in /var/lib/condor/execute/dir_1234046/ds/sub-890465/label
------------------------------------------------------------------------
22-Oct-2025 01:56:45 - Done 'CAT12: Segmentation'
22-Oct-2025 01:56:45 - Done
Bye for now...
get(ok): sourcedata/raw/sub-890465/anat/sub-890465_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-890465/label/catROI_sub-890465_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-890465/label/catROI_sub-890465_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-890465/mri/it_sub-890465_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-890465/mri/it_sub-890465_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-890465/mri/it_sub-890465_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-890465/mri/it_sub-890465_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-890465/mri/m0wp1sub-890465_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-890465/mri/m0wp1sub-890465_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-890465/mri/mwp1sub-890465_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-890465/mri/mwp1sub-890465_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-890465/mri/p0sub-890465_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-890465/mri/p0sub-890465_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-890465/mri/t_sub-890465_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-890465/mri/t_sub-890465_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-890465/mri/t_sub-890465_acq-headmotion2_T1w_affine_reorient.mat (file)
unlock(ok): sub-890465/mri/t_sub-890465_acq-headmotion2_T1w_rigid_reorient.mat (file)
unlock(ok): sub-890465/mri/wp0sub-890465_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-890465/mri/wp0sub-890465_acq-headmotion2_T1w.nii.gz (file)
unlock(ok): sub-890465/report/cat_sub-890465_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-890465/report/cat_sub-890465_acq-headmotion2_T1w.mat (file)
unlock(ok): sub-890465/report/catreport_sub-890465_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-890465/report/catreport_sub-890465_acq-headmotion2_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234046/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-890465/label/catROI_sub-890465_acq-standard_T1w.mat (file)
add(ok): sub-890465/label/catROI_sub-890465_acq-standard_T1w.xml (file)
add(ok): sub-890465/mri/it_sub-890465_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-890465/mri/it_sub-890465_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-890465/mri/m0wp1sub-890465_acq-standard_T1w.nii.gz (file)
add(ok): sub-890465/mri/mwp1sub-890465_acq-standard_T1w.nii.gz (file)
add(ok): sub-890465/mri/p0sub-890465_acq-standard_T1w.nii.gz (file)
add(ok): sub-890465/mri/t_sub-890465_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-890465/mri/t_sub-890465_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-890465/mri/wp0sub-890465_acq-standard_T1w.nii.gz (file)
add(ok): sub-890465/report/cat_sub-890465_acq-standard_T1w.mat (file)
add(ok): sub-890465/report/cat_sub-890465_acq-standard_T1w.xml (file)
add(ok): sub-890465/report/catlog_sub-890465_acq-standard_T1w.txt (file)
add(ok): sub-890465/report/catreport_sub-890465_acq-standard_T1w.pdf (file)
add(ok): sub-890465/label/catROI_sub-890465_acq-headmotion1_T1w.mat (file)
add(ok): sub-890465/label/catROI_sub-890465_acq-headmotion2_T1w.mat (file)
add(ok): sub-890465/mri/it_sub-890465_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-890465/mri/it_sub-890465_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-890465/mri/it_sub-890465_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-890465/mri/it_sub-890465_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-890465/mri/m0wp1sub-890465_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-890465/mri/m0wp1sub-890465_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-890465/mri/mwp1sub-890465_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-890465/mri/mwp1sub-890465_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-890465/mri/p0sub-890465_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-890465/mri/p0sub-890465_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-890465/mri/t_sub-890465_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-890465/mri/t_sub-890465_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-890465/mri/t_sub-890465_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-890465/mri/t_sub-890465_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-890465/mri/wp0sub-890465_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-890465/mri/wp0sub-890465_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-890465/report/cat_sub-890465_acq-headmotion1_T1w.mat (file)
add(ok): sub-890465/report/cat_sub-890465_acq-headmotion2_T1w.mat (file)
add(ok): sub-890465/report/catreport_sub-890465_acq-headmotion1_T1w.pdf (file)
add(ok): sub-890465/report/catreport_sub-890465_acq-headmotion2_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-890465/label/catROI_sub-890465_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/label/catROI_sub-890465_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/label/catROI_sub-890465_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/it_sub-890465_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/it_sub-890465_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/it_sub-890465_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/it_sub-890465_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/it_sub-890465_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/it_sub-890465_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/m0wp1sub-890465_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/m0wp1sub-890465_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/m0wp1sub-890465_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/mwp1sub-890465_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/mwp1sub-890465_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/mwp1sub-890465_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/p0sub-890465_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/p0sub-890465_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/p0sub-890465_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/t_sub-890465_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/t_sub-890465_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/t_sub-890465_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/t_sub-890465_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/t_sub-890465_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/t_sub-890465_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/wp0sub-890465_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/wp0sub-890465_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-890465/mri/wp0sub-890465_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-890465/report/cat_sub-890465_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/report/cat_sub-890465_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/report/cat_sub-890465_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-890465/report/catreport_sub-890465_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-890465/report/catreport_sub-890465_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-890465/report/catreport_sub-890465_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001125 seconds
flock: executing git
SUCCESS
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