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ds004173-catqc/logs/10071064.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1234037/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1234037/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234037/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:29 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:30 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234037/ds/sub-549056/sub-549056_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-549056/sub-549056_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 48s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 5s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 51s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 42s
Update probability maps 8s
85s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 3s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.02) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 23s
89s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 15s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 65s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
119s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
4s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 32s
ROI estimation of 'lpba40' atlas 10s
ROI estimation of 'hammers' atlas 26s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 9s
ROI estimation of 'aal3' atlas 20s
ROI estimation of 'mori' atlas 31s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 60s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 49s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 99s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 147s
Write results 150s
585s
Quality check 15s
/var/lib/condor/execute/dir_1234037/ds/sub-549056/report/catreport_sub-549056_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 25 minute(s) and 42 second(s).
Image Quality Rating (IQR): 86.17% (B)
GM volume (GMV): 46.63% (617.10 / 1323.50 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234037/ds/sub-549056/mri
Reports are saved in /var/lib/condor/execute/dir_1234037/ds/sub-549056/report
Labels are saved in /var/lib/condor/execute/dir_1234037/ds/sub-549056/label
------------------------------------------------------------------------
22-Oct-2025 01:06:14 - Done 'CAT12: Segmentation'
22-Oct-2025 01:06:14 - Done
Bye for now...
get(ok): sourcedata/raw/sub-549056/anat/sub-549056_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234037/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1234037/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-549056/label/catROI_sub-549056_acq-standard_T1w.mat (file)
add(ok): sub-549056/label/catROI_sub-549056_acq-standard_T1w.xml (file)
add(ok): sub-549056/mri/it_sub-549056_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-549056/mri/it_sub-549056_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-549056/mri/m0wp1sub-549056_acq-standard_T1w.nii.gz (file)
add(ok): sub-549056/mri/mwp1sub-549056_acq-standard_T1w.nii.gz (file)
add(ok): sub-549056/mri/p0sub-549056_acq-standard_T1w.nii.gz (file)
add(ok): sub-549056/mri/t_sub-549056_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-549056/mri/t_sub-549056_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-549056/mri/wp0sub-549056_acq-standard_T1w.nii.gz (file)
add(ok): sub-549056/report/cat_sub-549056_acq-standard_T1w.mat (file)
add(ok): sub-549056/report/cat_sub-549056_acq-standard_T1w.xml (file)
add(ok): sub-549056/report/catlog_sub-549056_acq-standard_T1w.txt (file)
add(ok): sub-549056/report/catreport_sub-549056_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:07:05 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:07:05 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234037/ds/sub-549056/sub-549056_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-549056/sub-549056_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 49s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 5s
Affine registration 8s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
73s
SPM preprocessing 1 (estimate 2): 54s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 41s
Update probability maps 8s
83s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 10s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.04) 13s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 23s
87s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 14s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.06) 51s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
103s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 28s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
8s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 29s
ROI estimation of 'lpba40' atlas 8s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 8s
ROI estimation of 'aal3' atlas 14s
ROI estimation of 'mori' atlas 20s
ROI estimation of 'anatomy3' atlas 27s
ROI estimation of 'julichbrain' atlas 36s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 23s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 45s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 96s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 145s
Write results 147s
501s
Quality check 15s
/var/lib/condor/execute/dir_1234037/ds/sub-549056/report/catreport_sub-549056_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 15 second(s).
Image Quality Rating (IQR): 82.82% (B-)
GM volume (GMV): 45.63% (596.93 / 1308.26 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234037/ds/sub-549056/mri
Reports are saved in /var/lib/condor/execute/dir_1234037/ds/sub-549056/report
Labels are saved in /var/lib/condor/execute/dir_1234037/ds/sub-549056/label
------------------------------------------------------------------------
22-Oct-2025 01:31:24 - Done 'CAT12: Segmentation'
22-Oct-2025 01:31:24 - Done
Bye for now...
get(ok): sourcedata/raw/sub-549056/anat/sub-549056_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-549056/label/catROI_sub-549056_acq-standard_T1w.mat (file)
unlock(ok): sub-549056/mri/it_sub-549056_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-549056/mri/it_sub-549056_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-549056/mri/m0wp1sub-549056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-549056/mri/mwp1sub-549056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-549056/mri/p0sub-549056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-549056/mri/t_sub-549056_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-549056/mri/t_sub-549056_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-549056/mri/wp0sub-549056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-549056/report/cat_sub-549056_acq-standard_T1w.mat (file)
unlock(ok): sub-549056/report/catreport_sub-549056_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234037/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-549056/label/catROI_sub-549056_acq-headmotion1_T1w.mat (file)
add(ok): sub-549056/label/catROI_sub-549056_acq-headmotion1_T1w.xml (file)
add(ok): sub-549056/mri/it_sub-549056_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-549056/mri/it_sub-549056_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-549056/mri/m0wp1sub-549056_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-549056/mri/mwp1sub-549056_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-549056/mri/p0sub-549056_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-549056/mri/t_sub-549056_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-549056/mri/t_sub-549056_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-549056/mri/wp0sub-549056_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-549056/report/cat_sub-549056_acq-headmotion1_T1w.mat (file)
add(ok): sub-549056/report/cat_sub-549056_acq-headmotion1_T1w.xml (file)
add(ok): sub-549056/report/catlog_sub-549056_acq-headmotion1_T1w.txt (file)
add(ok): sub-549056/report/catreport_sub-549056_acq-headmotion1_T1w.pdf (file)
add(ok): sub-549056/label/catROI_sub-549056_acq-standard_T1w.mat (file)
add(ok): sub-549056/mri/it_sub-549056_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-549056/mri/it_sub-549056_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-549056/mri/m0wp1sub-549056_acq-standard_T1w.nii.gz (file)
add(ok): sub-549056/mri/mwp1sub-549056_acq-standard_T1w.nii.gz (file)
add(ok): sub-549056/mri/p0sub-549056_acq-standard_T1w.nii.gz (file)
add(ok): sub-549056/mri/t_sub-549056_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-549056/mri/t_sub-549056_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-549056/mri/wp0sub-549056_acq-standard_T1w.nii.gz (file)
add(ok): sub-549056/report/cat_sub-549056_acq-standard_T1w.mat (file)
add(ok): sub-549056/report/catreport_sub-549056_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:32:26 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:32:26 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234037/ds/sub-549056/sub-549056_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-549056/sub-549056_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 56s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 4s
Final correction 6s
Final scaling 6s
43s
Correct center-of-mass 5s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
76s
SPM preprocessing 1 (estimate 2): 74s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 14s
Update Skull-Stripping 40s
Update probability maps 8s
82s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 7s
100s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.00) 12s
Estimate local tissue thresholds (WM) 19s
Estimate local tissue thresholds (GM) 22s
Intensity transformation 0s
SANLM denoising after LAS (medium) 24s
86s
ROI segmentation (partitioning)
Atlas -> subject space 7s
Major structures 15s
Ventricle detection 13s
Blood vessel detection 8s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.07) 51s
Manual stroke lesion detection 0s
Closing of deep structures 1s
Side alignment 4s
Final corrections 3s
102s
Apply enhanced blood vessel correction 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 29s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 2s
11s
11s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 2s
ROI estimation of 'cobra' atlas 8s
ROI estimation of 'neuromorphometrics' atlas 30s
ROI estimation of 'lpba40' atlas 9s
ROI estimation of 'hammers' atlas 22s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 5s
ROI estimation of 'ibsr' atlas 7s
ROI estimation of 'aal3' atlas 12s
ROI estimation of 'mori' atlas 17s
ROI estimation of 'anatomy3' atlas 23s
ROI estimation of 'julichbrain' atlas 36s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 31s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 77s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 126s
Write results 128s
429s
Quality check 15s
/var/lib/condor/execute/dir_1234037/ds/sub-549056/report/catreport_sub-549056_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 23 minute(s) and 38 second(s).
Image Quality Rating (IQR): 81.47% (B-)
GM volume (GMV): 45.22% (585.28 / 1294.37 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234037/ds/sub-549056/mri
Reports are saved in /var/lib/condor/execute/dir_1234037/ds/sub-549056/report
Labels are saved in /var/lib/condor/execute/dir_1234037/ds/sub-549056/label
------------------------------------------------------------------------
22-Oct-2025 01:56:08 - Done 'CAT12: Segmentation'
22-Oct-2025 01:56:08 - Done
Bye for now...
get(ok): sourcedata/raw/sub-549056/anat/sub-549056_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-549056/label/catROI_sub-549056_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-549056/label/catROI_sub-549056_acq-standard_T1w.mat (file)
unlock(ok): sub-549056/mri/it_sub-549056_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-549056/mri/it_sub-549056_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-549056/mri/it_sub-549056_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-549056/mri/it_sub-549056_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-549056/mri/m0wp1sub-549056_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-549056/mri/m0wp1sub-549056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-549056/mri/mwp1sub-549056_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-549056/mri/mwp1sub-549056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-549056/mri/p0sub-549056_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-549056/mri/p0sub-549056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-549056/mri/t_sub-549056_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-549056/mri/t_sub-549056_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-549056/mri/t_sub-549056_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-549056/mri/t_sub-549056_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-549056/mri/wp0sub-549056_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-549056/mri/wp0sub-549056_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-549056/report/cat_sub-549056_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-549056/report/cat_sub-549056_acq-standard_T1w.mat (file)
unlock(ok): sub-549056/report/catreport_sub-549056_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-549056/report/catreport_sub-549056_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234037/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-549056/label/catROI_sub-549056_acq-headmotion2_T1w.mat (file)
add(ok): sub-549056/label/catROI_sub-549056_acq-headmotion2_T1w.xml (file)
add(ok): sub-549056/mri/it_sub-549056_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-549056/mri/it_sub-549056_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-549056/mri/m0wp1sub-549056_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-549056/mri/mwp1sub-549056_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-549056/mri/p0sub-549056_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-549056/mri/t_sub-549056_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-549056/mri/t_sub-549056_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-549056/mri/wp0sub-549056_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-549056/report/cat_sub-549056_acq-headmotion2_T1w.mat (file)
add(ok): sub-549056/report/cat_sub-549056_acq-headmotion2_T1w.xml (file)
add(ok): sub-549056/report/catlog_sub-549056_acq-headmotion2_T1w.txt (file)
add(ok): sub-549056/report/catreport_sub-549056_acq-headmotion2_T1w.pdf (file)
add(ok): sub-549056/label/catROI_sub-549056_acq-headmotion1_T1w.mat (file)
add(ok): sub-549056/label/catROI_sub-549056_acq-standard_T1w.mat (file)
add(ok): sub-549056/mri/it_sub-549056_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-549056/mri/it_sub-549056_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-549056/mri/it_sub-549056_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-549056/mri/it_sub-549056_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-549056/mri/m0wp1sub-549056_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-549056/mri/m0wp1sub-549056_acq-standard_T1w.nii.gz (file)
add(ok): sub-549056/mri/mwp1sub-549056_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-549056/mri/mwp1sub-549056_acq-standard_T1w.nii.gz (file)
add(ok): sub-549056/mri/p0sub-549056_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-549056/mri/p0sub-549056_acq-standard_T1w.nii.gz (file)
add(ok): sub-549056/mri/t_sub-549056_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-549056/mri/t_sub-549056_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-549056/mri/t_sub-549056_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-549056/mri/t_sub-549056_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-549056/mri/wp0sub-549056_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-549056/mri/wp0sub-549056_acq-standard_T1w.nii.gz (file)
add(ok): sub-549056/report/cat_sub-549056_acq-headmotion1_T1w.mat (file)
add(ok): sub-549056/report/cat_sub-549056_acq-standard_T1w.mat (file)
add(ok): sub-549056/report/catreport_sub-549056_acq-headmotion1_T1w.pdf (file)
add(ok): sub-549056/report/catreport_sub-549056_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-549056/label/catROI_sub-549056_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/label/catROI_sub-549056_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/label/catROI_sub-549056_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/it_sub-549056_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/it_sub-549056_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/it_sub-549056_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/it_sub-549056_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/it_sub-549056_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/it_sub-549056_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/m0wp1sub-549056_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/m0wp1sub-549056_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/m0wp1sub-549056_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/mwp1sub-549056_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/mwp1sub-549056_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/mwp1sub-549056_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/p0sub-549056_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/p0sub-549056_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/p0sub-549056_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/t_sub-549056_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/t_sub-549056_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/t_sub-549056_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/t_sub-549056_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/t_sub-549056_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/t_sub-549056_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/wp0sub-549056_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/wp0sub-549056_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-549056/mri/wp0sub-549056_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-549056/report/cat_sub-549056_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/report/cat_sub-549056_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/report/cat_sub-549056_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-549056/report/catreport_sub-549056_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-549056/report/catreport_sub-549056_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-549056/report/catreport_sub-549056_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001377 seconds
flock: executing git
SUCCESS
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