f.hoffstaedter/ds004173-catqc
1
0
Fork 0
Code Pull requests Packages Activity
ds004173-catqc/logs/10071063.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

597 lines
37 KiB (Stored with Git Annex)
Text
Raw Permalink Blame History

This file contains invisible Unicode characters

This file contains invisible Unicode characters that are indistinguishable to humans but may be processed differently by a computer. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

install(ok): /var/lib/condor/execute/dir_1234028/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1234028/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234028/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:29 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:29 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234028/ds/sub-607339/sub-607339_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-607339/sub-607339_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 59s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 3s
Final correction 5s
Final scaling 6s
43s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
78s
SPM preprocessing 1 (estimate 2): 66s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
87s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 10s
105s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.03) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
93s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 16s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.27) 69s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
127s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 50s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 36s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 31s
ROI estimation of 'anatomy3' atlas 44s
ROI estimation of 'julichbrain' atlas 59s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 48s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 96s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 99s
Write results 101s
574s
Quality check 14s
/var/lib/condor/execute/dir_1234028/ds/sub-607339/report/catreport_sub-607339_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 58 second(s).
Image Quality Rating (IQR): 87.98% (B+)
GM volume (GMV): 42.26% (647.66 / 1532.59 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234028/ds/sub-607339/mri
Reports are saved in /var/lib/condor/execute/dir_1234028/ds/sub-607339/report
Labels are saved in /var/lib/condor/execute/dir_1234028/ds/sub-607339/label
------------------------------------------------------------------------
22-Oct-2025 01:07:29 - Done 'CAT12: Segmentation'
22-Oct-2025 01:07:29 - Done
Bye for now...
get(ok): sourcedata/raw/sub-607339/anat/sub-607339_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234028/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1234028/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-607339/label/catROI_sub-607339_acq-standard_T1w.mat (file)
add(ok): sub-607339/label/catROI_sub-607339_acq-standard_T1w.xml (file)
add(ok): sub-607339/mri/it_sub-607339_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-607339/mri/it_sub-607339_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-607339/mri/m0wp1sub-607339_acq-standard_T1w.nii.gz (file)
add(ok): sub-607339/mri/mwp1sub-607339_acq-standard_T1w.nii.gz (file)
add(ok): sub-607339/mri/p0sub-607339_acq-standard_T1w.nii.gz (file)
add(ok): sub-607339/mri/t_sub-607339_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-607339/mri/t_sub-607339_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-607339/mri/wp0sub-607339_acq-standard_T1w.nii.gz (file)
add(ok): sub-607339/report/cat_sub-607339_acq-standard_T1w.mat (file)
add(ok): sub-607339/report/cat_sub-607339_acq-standard_T1w.xml (file)
add(ok): sub-607339/report/catlog_sub-607339_acq-standard_T1w.txt (file)
add(ok): sub-607339/report/catreport_sub-607339_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:08:12 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:08:12 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234028/ds/sub-607339/sub-607339_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-607339/sub-607339_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 60s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 7s
Refine background 3s
Final correction 5s
Final scaling 6s
41s
Correct center-of-mass 4s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
70s
SPM preprocessing 1 (estimate 2): 74s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
86s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 17s
Fast Optimized Shooting registration 11s
104s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 2s
Prepare segments (LASmod = 1.08) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 26s
92s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 14s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.26) 68s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
124s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 30s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
6s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 48s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 34s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 13s
ROI estimation of 'aal3' atlas 21s
ROI estimation of 'mori' atlas 31s
ROI estimation of 'anatomy3' atlas 45s
ROI estimation of 'julichbrain' atlas 59s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 8s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 21s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 39s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 67s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 78s
Write results 79s
509s
Quality check 14s
/var/lib/condor/execute/dir_1234028/ds/sub-607339/report/catreport_sub-607339_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 1 second(s).
Image Quality Rating (IQR): 87.79% (B+)
GM volume (GMV): 42.04% (638.39 / 1518.48 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234028/ds/sub-607339/mri
Reports are saved in /var/lib/condor/execute/dir_1234028/ds/sub-607339/report
Labels are saved in /var/lib/condor/execute/dir_1234028/ds/sub-607339/label
------------------------------------------------------------------------
22-Oct-2025 01:34:16 - Done 'CAT12: Segmentation'
22-Oct-2025 01:34:16 - Done
Bye for now...
get(ok): sourcedata/raw/sub-607339/anat/sub-607339_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-607339/label/catROI_sub-607339_acq-standard_T1w.mat (file)
unlock(ok): sub-607339/mri/it_sub-607339_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-607339/mri/it_sub-607339_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-607339/mri/m0wp1sub-607339_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-607339/mri/mwp1sub-607339_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-607339/mri/p0sub-607339_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-607339/mri/t_sub-607339_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-607339/mri/t_sub-607339_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-607339/mri/wp0sub-607339_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-607339/report/cat_sub-607339_acq-standard_T1w.mat (file)
unlock(ok): sub-607339/report/catreport_sub-607339_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234028/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-607339/label/catROI_sub-607339_acq-headmotion1_T1w.mat (file)
add(ok): sub-607339/label/catROI_sub-607339_acq-headmotion1_T1w.xml (file)
add(ok): sub-607339/mri/it_sub-607339_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-607339/mri/it_sub-607339_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-607339/mri/m0wp1sub-607339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-607339/mri/mwp1sub-607339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-607339/mri/p0sub-607339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-607339/mri/t_sub-607339_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-607339/mri/t_sub-607339_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-607339/mri/wp0sub-607339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-607339/report/cat_sub-607339_acq-headmotion1_T1w.mat (file)
add(ok): sub-607339/report/cat_sub-607339_acq-headmotion1_T1w.xml (file)
add(ok): sub-607339/report/catlog_sub-607339_acq-headmotion1_T1w.txt (file)
add(ok): sub-607339/report/catreport_sub-607339_acq-headmotion1_T1w.pdf (file)
add(ok): sub-607339/label/catROI_sub-607339_acq-standard_T1w.mat (file)
add(ok): sub-607339/mri/it_sub-607339_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-607339/mri/it_sub-607339_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-607339/mri/m0wp1sub-607339_acq-standard_T1w.nii.gz (file)
add(ok): sub-607339/mri/mwp1sub-607339_acq-standard_T1w.nii.gz (file)
add(ok): sub-607339/mri/p0sub-607339_acq-standard_T1w.nii.gz (file)
add(ok): sub-607339/mri/t_sub-607339_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-607339/mri/t_sub-607339_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-607339/mri/wp0sub-607339_acq-standard_T1w.nii.gz (file)
add(ok): sub-607339/report/cat_sub-607339_acq-standard_T1w.mat (file)
add(ok): sub-607339/report/catreport_sub-607339_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:35:04 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:35:04 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234028/ds/sub-607339/sub-607339_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-607339/sub-607339_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 59s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 7s
Refine background 3s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
75s
SPM preprocessing 1 (estimate 2): 65s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 42s
Update probability maps 8s
85s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 16s
Fast Optimized Shooting registration 9s
102s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 3s
Prepare partitions 4s
Prepare segments (LASmod = 1.12) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 23s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
95s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 17s
Ventricle detection 15s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.25) 58s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
117s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 3s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
12s
10s
Write result maps 1s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 3s
ROI estimation of 'cobra' atlas 11s
ROI estimation of 'neuromorphometrics' atlas 42s
ROI estimation of 'lpba40' atlas 12s
ROI estimation of 'hammers' atlas 31s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 7s
ROI estimation of 'ibsr' atlas 11s
ROI estimation of 'aal3' atlas 19s
ROI estimation of 'mori' atlas 28s
ROI estimation of 'anatomy3' atlas 36s
ROI estimation of 'julichbrain' atlas 40s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 25s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 50s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 66s
Write results 68s
404s
Quality check 13s
/var/lib/condor/execute/dir_1234028/ds/sub-607339/report/catreport_sub-607339_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 19 second(s).
Image Quality Rating (IQR): 86.34% (B)
GM volume (GMV): 40.68% (623.92 / 1533.70 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234028/ds/sub-607339/mri
Reports are saved in /var/lib/condor/execute/dir_1234028/ds/sub-607339/report
Labels are saved in /var/lib/condor/execute/dir_1234028/ds/sub-607339/label
------------------------------------------------------------------------
22-Oct-2025 01:59:26 - Done 'CAT12: Segmentation'
22-Oct-2025 01:59:26 - Done
Bye for now...
get(ok): sourcedata/raw/sub-607339/anat/sub-607339_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-607339/label/catROI_sub-607339_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-607339/label/catROI_sub-607339_acq-standard_T1w.mat (file)
unlock(ok): sub-607339/mri/it_sub-607339_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-607339/mri/it_sub-607339_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-607339/mri/it_sub-607339_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-607339/mri/it_sub-607339_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-607339/mri/m0wp1sub-607339_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-607339/mri/m0wp1sub-607339_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-607339/mri/mwp1sub-607339_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-607339/mri/mwp1sub-607339_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-607339/mri/p0sub-607339_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-607339/mri/p0sub-607339_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-607339/mri/t_sub-607339_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-607339/mri/t_sub-607339_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-607339/mri/t_sub-607339_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-607339/mri/t_sub-607339_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-607339/mri/wp0sub-607339_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-607339/mri/wp0sub-607339_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-607339/report/cat_sub-607339_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-607339/report/cat_sub-607339_acq-standard_T1w.mat (file)
unlock(ok): sub-607339/report/catreport_sub-607339_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-607339/report/catreport_sub-607339_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234028/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-607339/label/catROI_sub-607339_acq-headmotion2_T1w.mat (file)
add(ok): sub-607339/label/catROI_sub-607339_acq-headmotion2_T1w.xml (file)
add(ok): sub-607339/mri/it_sub-607339_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-607339/mri/it_sub-607339_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-607339/mri/m0wp1sub-607339_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-607339/mri/mwp1sub-607339_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-607339/mri/p0sub-607339_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-607339/mri/t_sub-607339_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-607339/mri/t_sub-607339_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-607339/mri/wp0sub-607339_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-607339/report/cat_sub-607339_acq-headmotion2_T1w.mat (file)
add(ok): sub-607339/report/cat_sub-607339_acq-headmotion2_T1w.xml (file)
add(ok): sub-607339/report/catlog_sub-607339_acq-headmotion2_T1w.txt (file)
add(ok): sub-607339/report/catreport_sub-607339_acq-headmotion2_T1w.pdf (file)
add(ok): sub-607339/label/catROI_sub-607339_acq-headmotion1_T1w.mat (file)
add(ok): sub-607339/label/catROI_sub-607339_acq-standard_T1w.mat (file)
add(ok): sub-607339/mri/it_sub-607339_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-607339/mri/it_sub-607339_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-607339/mri/it_sub-607339_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-607339/mri/it_sub-607339_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-607339/mri/m0wp1sub-607339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-607339/mri/m0wp1sub-607339_acq-standard_T1w.nii.gz (file)
add(ok): sub-607339/mri/mwp1sub-607339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-607339/mri/mwp1sub-607339_acq-standard_T1w.nii.gz (file)
add(ok): sub-607339/mri/p0sub-607339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-607339/mri/p0sub-607339_acq-standard_T1w.nii.gz (file)
add(ok): sub-607339/mri/t_sub-607339_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-607339/mri/t_sub-607339_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-607339/mri/t_sub-607339_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-607339/mri/t_sub-607339_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-607339/mri/wp0sub-607339_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-607339/mri/wp0sub-607339_acq-standard_T1w.nii.gz (file)
add(ok): sub-607339/report/cat_sub-607339_acq-headmotion1_T1w.mat (file)
add(ok): sub-607339/report/cat_sub-607339_acq-standard_T1w.mat (file)
add(ok): sub-607339/report/catreport_sub-607339_acq-headmotion1_T1w.pdf (file)
add(ok): sub-607339/report/catreport_sub-607339_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-607339/label/catROI_sub-607339_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/label/catROI_sub-607339_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/label/catROI_sub-607339_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/it_sub-607339_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/it_sub-607339_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/it_sub-607339_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/it_sub-607339_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/it_sub-607339_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/it_sub-607339_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/m0wp1sub-607339_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/m0wp1sub-607339_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/m0wp1sub-607339_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/mwp1sub-607339_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/mwp1sub-607339_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/mwp1sub-607339_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/p0sub-607339_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/p0sub-607339_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/p0sub-607339_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/t_sub-607339_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/t_sub-607339_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/t_sub-607339_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/t_sub-607339_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/t_sub-607339_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/t_sub-607339_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/wp0sub-607339_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/wp0sub-607339_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-607339/mri/wp0sub-607339_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-607339/report/cat_sub-607339_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/report/cat_sub-607339_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/report/cat_sub-607339_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-607339/report/catreport_sub-607339_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-607339/report/catreport_sub-607339_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-607339/report/catreport_sub-607339_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.000029 seconds
flock: executing git
SUCCESS
View git blame Copy permalink