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ds004173-catqc/logs/10071062.out
Felix Hoffstaedter b5c00fc272 add logs
2025-10-23 16:31:13 +02:00

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install(ok): /var/lib/condor/execute/dir_1234020/ds (dataset)
install(ok): /var/lib/condor/execute/dir_1234020/ds/sourcedata/raw (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234020/ds/sourcedata/raw]
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 00:40:30 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 00:40:31 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234020/ds/sub-750675/sub-750675_acq-standard_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-750675/sub-750675_acq-standard_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 53s
Affine preprocessing (APP)
Initialize 8s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 6s
Final scaling 6s
42s
Correct center-of-mass 4s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
88s
SPM preprocessing 1 (estimate 2): 56s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 44s
Update probability maps 8s
88s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
103s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.01) 15s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 18s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 69s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
130s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.07) 32s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.04]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 55s
ROI estimation of 'lpba40' atlas 16s
ROI estimation of 'hammers' atlas 39s
ROI estimation of 'thalamus' atlas 4s
ROI estimation of 'suit' atlas 11s
ROI estimation of 'ibsr' atlas 18s
ROI estimation of 'aal3' atlas 29s
ROI estimation of 'mori' atlas 43s
ROI estimation of 'anatomy3' atlas 62s
ROI estimation of 'julichbrain' atlas 83s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 12s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 34s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 66s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 100s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 77s
Write results 79s
670s
Quality check 14s
/var/lib/condor/execute/dir_1234020/ds/sub-750675/report/catreport_sub-750675_acq-standard_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 28 minute(s) and 29 second(s).
Image Quality Rating (IQR): 87.47% (B+)
GM volume (GMV): 45.46% (686.38 / 1509.89 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234020/ds/sub-750675/mri
Reports are saved in /var/lib/condor/execute/dir_1234020/ds/sub-750675/report
Labels are saved in /var/lib/condor/execute/dir_1234020/ds/sub-750675/label
------------------------------------------------------------------------
22-Oct-2025 01:09:02 - Done 'CAT12: Segmentation'
22-Oct-2025 01:09:02 - Done
Bye for now...
get(ok): sourcedata/raw/sub-750675/anat/sub-750675_acq-standard_T1w.nii.gz (file) [from s3-PUBLIC...]
install(ok): code/cat12 (dataset) [Installed subdataset in order to get /var/lib/condor/execute/dir_1234020/ds/code/cat12]
get(ok): code/cat12/cat12.9_r2665.simg (file) [from inm7-storage...]
run(ok): /var/lib/condor/execute/dir_1234020/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-750675/label/catROI_sub-750675_acq-standard_T1w.mat (file)
add(ok): sub-750675/label/catROI_sub-750675_acq-standard_T1w.xml (file)
add(ok): sub-750675/mri/it_sub-750675_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-750675/mri/it_sub-750675_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-750675/mri/m0wp1sub-750675_acq-standard_T1w.nii.gz (file)
add(ok): sub-750675/mri/mwp1sub-750675_acq-standard_T1w.nii.gz (file)
add(ok): sub-750675/mri/p0sub-750675_acq-standard_T1w.nii.gz (file)
add(ok): sub-750675/mri/t_sub-750675_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-750675/mri/t_sub-750675_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-750675/mri/wp0sub-750675_acq-standard_T1w.nii.gz (file)
add(ok): sub-750675/report/cat_sub-750675_acq-standard_T1w.mat (file)
add(ok): sub-750675/report/cat_sub-750675_acq-standard_T1w.xml (file)
add(ok): sub-750675/report/catlog_sub-750675_acq-standard_T1w.txt (file)
add(ok): sub-750675/report/catreport_sub-750675_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 14)
get (notneeded: 2, ok: 2)
install (ok: 1)
run (ok: 1)
save (ok: 1)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:09:47 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:09:47 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234020/ds/sub-750675/sub-750675_acq-headmotion1_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-750675/sub-750675_acq-headmotion1_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 55s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 6s
Final scaling 6s
42s
Correct center-of-mass 3s
Affine registration 9s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
80s
SPM preprocessing 1 (estimate 2): 55s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 8s
86s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 3s
97s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 20s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 27s
96s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 15s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 72s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 5s
Final corrections 3s
130s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 33s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 5s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
11s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 14s
ROI estimation of 'neuromorphometrics' atlas 55s
ROI estimation of 'lpba40' atlas 16s
ROI estimation of 'hammers' atlas 38s
ROI estimation of 'thalamus' atlas 3s
ROI estimation of 'suit' atlas 8s
ROI estimation of 'ibsr' atlas 15s
ROI estimation of 'aal3' atlas 23s
ROI estimation of 'mori' atlas 32s
ROI estimation of 'anatomy3' atlas 44s
ROI estimation of 'julichbrain' atlas 64s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 9s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 39s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 68s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 74s
Write results 76s
532s
Quality check 14s
/var/lib/condor/execute/dir_1234020/ds/sub-750675/report/catreport_sub-750675_acq-headmotion1_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 26 minute(s) and 31 second(s).
Image Quality Rating (IQR): 87.00% (B+)
GM volume (GMV): 45.27% (680.40 / 1503.05 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234020/ds/sub-750675/mri
Reports are saved in /var/lib/condor/execute/dir_1234020/ds/sub-750675/report
Labels are saved in /var/lib/condor/execute/dir_1234020/ds/sub-750675/label
------------------------------------------------------------------------
22-Oct-2025 01:36:21 - Done 'CAT12: Segmentation'
22-Oct-2025 01:36:21 - Done
Bye for now...
get(ok): sourcedata/raw/sub-750675/anat/sub-750675_acq-headmotion1_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-750675/label/catROI_sub-750675_acq-standard_T1w.mat (file)
unlock(ok): sub-750675/mri/it_sub-750675_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-750675/mri/it_sub-750675_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-750675/mri/m0wp1sub-750675_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-750675/mri/mwp1sub-750675_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-750675/mri/p0sub-750675_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-750675/mri/t_sub-750675_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-750675/mri/t_sub-750675_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-750675/mri/wp0sub-750675_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-750675/report/cat_sub-750675_acq-standard_T1w.mat (file)
unlock(ok): sub-750675/report/catreport_sub-750675_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234020/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-750675/label/catROI_sub-750675_acq-headmotion1_T1w.mat (file)
add(ok): sub-750675/label/catROI_sub-750675_acq-headmotion1_T1w.xml (file)
add(ok): sub-750675/mri/it_sub-750675_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-750675/mri/it_sub-750675_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-750675/mri/m0wp1sub-750675_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-750675/mri/mwp1sub-750675_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-750675/mri/p0sub-750675_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-750675/mri/t_sub-750675_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-750675/mri/t_sub-750675_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-750675/mri/wp0sub-750675_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-750675/report/cat_sub-750675_acq-headmotion1_T1w.mat (file)
add(ok): sub-750675/report/cat_sub-750675_acq-headmotion1_T1w.xml (file)
add(ok): sub-750675/report/catlog_sub-750675_acq-headmotion1_T1w.txt (file)
add(ok): sub-750675/report/catreport_sub-750675_acq-headmotion1_T1w.pdf (file)
add(ok): sub-750675/label/catROI_sub-750675_acq-standard_T1w.mat (file)
add(ok): sub-750675/mri/it_sub-750675_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-750675/mri/it_sub-750675_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-750675/mri/m0wp1sub-750675_acq-standard_T1w.nii.gz (file)
add(ok): sub-750675/mri/mwp1sub-750675_acq-standard_T1w.nii.gz (file)
add(ok): sub-750675/mri/p0sub-750675_acq-standard_T1w.nii.gz (file)
add(ok): sub-750675/mri/t_sub-750675_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-750675/mri/t_sub-750675_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-750675/mri/wp0sub-750675_acq-standard_T1w.nii.gz (file)
add(ok): sub-750675/report/cat_sub-750675_acq-standard_T1w.mat (file)
add(ok): sub-750675/report/catreport_sub-750675_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 25)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 11)
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/usr/local/MATLAB/MATLAB_Runtime/R2023b/runtime/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/bin/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/os/glnxa64:/usr/local/MATLAB/MATLAB_Runtime/R2023b/sys/opengl/lib/glnxa64
SPM25, version 25.01.02 (standalone)
MATLAB, version 23.2.0.2859533 (R2023b) Update 10
___ ____ __ __
/ __)( _ \( \/ )
\__ \ )___/ ) ( Statistical Parametric Mapping
(___/(__) (_/\/\_) SPM25 - https://www.fil.ion.ucl.ac.uk/spm/
Item opts: No field(s) named
ngaus
warpreg
bias
acc
redspmres
Item registration: No field(s) named
T1
brainmask
cat12atlas
darteltpm
shootingtpm
regstr
Item atlas: No field(s) named
warped
dartel
------------------------------------------------------------------------
22-Oct-2025 01:37:09 - Running job #1
------------------------------------------------------------------------
22-Oct-2025 01:37:09 - Running 'CAT12: Segmentation'
--------------------------------------------
No commercial use of LPBA40 atlas!
Permission is granted to use this atlas without charge for non-commercial research purposes only:
<a href = "https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf">https://www.loni.usc.edu/docs/atlases_methods/Human_Atlas_Methods.pdf</a>
--------------------------------------------
--------------------------------------------
No commercial use of SUIT cerebellar atlas!
Creative Commons Attribution-NonCommercial 3.0 Unported License does not allow commercial use.
--------------------------------------------
Uncompress /var/lib/condor/execute/dir_1234020/ds/sub-750675/sub-750675_acq-headmotion2_T1w.nii
------------------------------------------------------------------------
CAT12.9 r2665: 1/1: ./ds/sub-750675/sub-750675_acq-headmotion2_T1w.n
------------------------------------------------------------------------
SANLM denoising (medium) 57s
Affine preprocessing (APP)
Initialize 7s
Estimate background 7s
Initial correction 6s
Refine background 4s
Final correction 5s
Final scaling 6s
42s
Correct center-of-mass 3s
Affine registration 10s
SPM preprocessing 1 (estimate 1 - TPM registration): Fontconfig error: Cannot load default config file
Fontconfig error: Cannot load default config file
79s
SPM preprocessing 1 (estimate 2): 55s
SPM preprocessing 2 (write)
Write Segmentation 20s
Update Segmentation 15s
Update Skull-Stripping 43s
Update probability maps 9s
86s
Global intensity correction 16s
SANLM denoising after intensity normalization (medium) 19s
Fast Optimized Shooting registration 7s
102s
Local adaptive segmentation (LASstr=0.50)
Prepare maps 4s
Prepare partitions 4s
Prepare segments (LASmod = 1.00) 14s
Estimate local tissue thresholds (WM) 21s
Estimate local tissue thresholds (GM) 24s
Intensity transformation 0s
SANLM denoising after LAS (medium) 28s
98s
ROI segmentation (partitioning)
Atlas -> subject space 8s
Major structures 18s
Ventricle detection 18s
Blood vessel detection 9s
WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 63s
Manual stroke lesion detection 0s
Closing of deep structures 2s
Side alignment 4s
Final corrections 3s
124s
No enhanced blood vessel correction is required 1s
Amap using initial SPM12 segmentations (MRF filter strength 0.06) 31s
AMAP peaks: [CSF,GM,WM] = [0.360.06,0.680.08,0.980.05]
Final cleanup (gcutstr=0.25)
Level 1 cleanup (ROI estimation) 4s
Level 1 cleanup (brain masking) 4s
Level 2 cleanup (CSF correction) 2s
Level 3 cleanup (CSF/WM PVE) 3s
13s
10s
Write result maps 2s
ROI estimation in native space
ROI estimation of 'thalamic_nuclei' atlas 4s
ROI estimation of 'cobra' atlas 13s
ROI estimation of 'neuromorphometrics' atlas 48s
ROI estimation of 'lpba40' atlas 14s
ROI estimation of 'hammers' atlas 33s
ROI estimation of 'thalamus' atlas 2s
ROI estimation of 'suit' atlas 6s
ROI estimation of 'ibsr' atlas 10s
ROI estimation of 'aal3' atlas 19s
ROI estimation of 'mori' atlas 20s
ROI estimation of 'anatomy3' atlas 27s
ROI estimation of 'julichbrain' atlas 34s
ROI estimation of 'Tian_Subcortex_S4_7T' atlas 5s
ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s
ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 31s
ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 52s
ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 63s
Write results 65s
396s
Quality check 13s
/var/lib/condor/execute/dir_1234020/ds/sub-750675/report/catreport_sub-750675_acq-headmotion2_T1w.pdf
------------------------------------------------------------------------
CAT preprocessing takes 24 minute(s) and 10 second(s).
Image Quality Rating (IQR): 86.82% (B+)
GM volume (GMV): 44.66% (672.99 / 1506.96 ml)
Segmentations are saved in /var/lib/condor/execute/dir_1234020/ds/sub-750675/mri
Reports are saved in /var/lib/condor/execute/dir_1234020/ds/sub-750675/report
Labels are saved in /var/lib/condor/execute/dir_1234020/ds/sub-750675/label
------------------------------------------------------------------------
22-Oct-2025 02:01:21 - Done 'CAT12: Segmentation'
22-Oct-2025 02:01:21 - Done
Bye for now...
get(ok): sourcedata/raw/sub-750675/anat/sub-750675_acq-headmotion2_T1w.nii.gz (file) [from s3-PUBLIC...]
unlock(ok): sub-750675/label/catROI_sub-750675_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-750675/label/catROI_sub-750675_acq-standard_T1w.mat (file)
unlock(ok): sub-750675/mri/it_sub-750675_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-750675/mri/it_sub-750675_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-750675/mri/it_sub-750675_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-750675/mri/it_sub-750675_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-750675/mri/m0wp1sub-750675_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-750675/mri/m0wp1sub-750675_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-750675/mri/mwp1sub-750675_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-750675/mri/mwp1sub-750675_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-750675/mri/p0sub-750675_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-750675/mri/p0sub-750675_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-750675/mri/t_sub-750675_acq-headmotion1_T1w_affine_reorient.mat (file)
unlock(ok): sub-750675/mri/t_sub-750675_acq-headmotion1_T1w_rigid_reorient.mat (file)
unlock(ok): sub-750675/mri/t_sub-750675_acq-standard_T1w_affine_reorient.mat (file)
unlock(ok): sub-750675/mri/t_sub-750675_acq-standard_T1w_rigid_reorient.mat (file)
unlock(ok): sub-750675/mri/wp0sub-750675_acq-headmotion1_T1w.nii.gz (file)
unlock(ok): sub-750675/mri/wp0sub-750675_acq-standard_T1w.nii.gz (file)
unlock(ok): sub-750675/report/cat_sub-750675_acq-headmotion1_T1w.mat (file)
unlock(ok): sub-750675/report/cat_sub-750675_acq-standard_T1w.mat (file)
unlock(ok): sub-750675/report/catreport_sub-750675_acq-headmotion1_T1w.pdf (file)
unlock(ok): sub-750675/report/catreport_sub-750675_acq-standard_T1w.pdf (file)
run(ok): /var/lib/condor/execute/dir_1234020/ds (dataset) [singularity exec -B /var/lib/condor/exec...]
add(ok): sub-750675/label/catROI_sub-750675_acq-headmotion2_T1w.mat (file)
add(ok): sub-750675/label/catROI_sub-750675_acq-headmotion2_T1w.xml (file)
add(ok): sub-750675/mri/it_sub-750675_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-750675/mri/it_sub-750675_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-750675/mri/m0wp1sub-750675_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-750675/mri/mwp1sub-750675_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-750675/mri/p0sub-750675_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-750675/mri/t_sub-750675_acq-headmotion2_T1w_affine_reorient.mat (file)
add(ok): sub-750675/mri/t_sub-750675_acq-headmotion2_T1w_rigid_reorient.mat (file)
add(ok): sub-750675/mri/wp0sub-750675_acq-headmotion2_T1w.nii.gz (file)
add(ok): sub-750675/report/cat_sub-750675_acq-headmotion2_T1w.mat (file)
add(ok): sub-750675/report/cat_sub-750675_acq-headmotion2_T1w.xml (file)
add(ok): sub-750675/report/catlog_sub-750675_acq-headmotion2_T1w.txt (file)
add(ok): sub-750675/report/catreport_sub-750675_acq-headmotion2_T1w.pdf (file)
add(ok): sub-750675/label/catROI_sub-750675_acq-headmotion1_T1w.mat (file)
add(ok): sub-750675/label/catROI_sub-750675_acq-standard_T1w.mat (file)
add(ok): sub-750675/mri/it_sub-750675_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-750675/mri/it_sub-750675_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-750675/mri/it_sub-750675_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-750675/mri/it_sub-750675_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-750675/mri/m0wp1sub-750675_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-750675/mri/m0wp1sub-750675_acq-standard_T1w.nii.gz (file)
add(ok): sub-750675/mri/mwp1sub-750675_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-750675/mri/mwp1sub-750675_acq-standard_T1w.nii.gz (file)
add(ok): sub-750675/mri/p0sub-750675_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-750675/mri/p0sub-750675_acq-standard_T1w.nii.gz (file)
add(ok): sub-750675/mri/t_sub-750675_acq-headmotion1_T1w_affine_reorient.mat (file)
add(ok): sub-750675/mri/t_sub-750675_acq-headmotion1_T1w_rigid_reorient.mat (file)
add(ok): sub-750675/mri/t_sub-750675_acq-standard_T1w_affine_reorient.mat (file)
add(ok): sub-750675/mri/t_sub-750675_acq-standard_T1w_rigid_reorient.mat (file)
add(ok): sub-750675/mri/wp0sub-750675_acq-headmotion1_T1w.nii.gz (file)
add(ok): sub-750675/mri/wp0sub-750675_acq-standard_T1w.nii.gz (file)
add(ok): sub-750675/report/cat_sub-750675_acq-headmotion1_T1w.mat (file)
add(ok): sub-750675/report/cat_sub-750675_acq-standard_T1w.mat (file)
add(ok): sub-750675/report/catreport_sub-750675_acq-headmotion1_T1w.pdf (file)
add(ok): sub-750675/report/catreport_sub-750675_acq-standard_T1w.pdf (file)
save(ok): . (dataset)
action summary:
add (ok: 36)
get (notneeded: 4, ok: 1)
run (ok: 1)
save (ok: 1)
unlock (ok: 22)
copy(ok): sub-750675/label/catROI_sub-750675_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/label/catROI_sub-750675_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/label/catROI_sub-750675_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/it_sub-750675_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/it_sub-750675_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/it_sub-750675_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/it_sub-750675_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/it_sub-750675_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/it_sub-750675_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/m0wp1sub-750675_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/m0wp1sub-750675_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/m0wp1sub-750675_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/mwp1sub-750675_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/mwp1sub-750675_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/mwp1sub-750675_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/p0sub-750675_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/p0sub-750675_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/p0sub-750675_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/t_sub-750675_acq-headmotion1_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/t_sub-750675_acq-headmotion1_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/t_sub-750675_acq-headmotion2_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/t_sub-750675_acq-headmotion2_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/t_sub-750675_acq-standard_T1w_affine_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/t_sub-750675_acq-standard_T1w_rigid_reorient.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/wp0sub-750675_acq-headmotion1_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/wp0sub-750675_acq-headmotion2_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-750675/mri/wp0sub-750675_acq-standard_T1w.nii.gz (file) [to catqc_out-storage...]
copy(ok): sub-750675/report/cat_sub-750675_acq-headmotion1_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/report/cat_sub-750675_acq-headmotion2_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/report/cat_sub-750675_acq-standard_T1w.mat (file) [to catqc_out-storage...]
copy(ok): sub-750675/report/catreport_sub-750675_acq-headmotion1_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-750675/report/catreport_sub-750675_acq-headmotion2_T1w.pdf (file) [to catqc_out-storage...]
copy(ok): sub-750675/report/catreport_sub-750675_acq-standard_T1w.pdf (file) [to catqc_out-storage...]
action summary:
copy (ok: 33)
flock: getting lock took 0.001329 seconds
flock: executing git
SUCCESS
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